RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 DDX4Q9NQI0 724 aaKnown RBP27.26■■□□□ 1.95
SDF4-202ENST00000360001 RASSF7Q02833 373 aa27.25■■□□□ 1.95
SDF4-202ENST00000360001 CXCL9Q07325 125 aa27.25■■□□□ 1.95
SDF4-202ENST00000360001 PDE4BQ07343 736 aa27.25■■□□□ 1.95
SDF4-202ENST00000360001 NAP1L2Q9ULW6 460 aaPredicted RBP27.25■■□□□ 1.95
SDF4-202ENST00000360001 GJB2P29033 226 aa27.24■■□□□ 1.95
SDF4-202ENST00000360001 RBM5P52756 815 aaKnown RBP eCLIP27.24■■□□□ 1.958e-6■■■■□ 20.7
SDF4-202ENST00000360001 SGMS1Q86VZ5 419 aa27.24■■□□□ 1.95
SDF4-202ENST00000360001 JDP2Q8WYK2 163 aa27.24■■□□□ 1.95
SDF4-202ENST00000360001 DYNLL2Q96FJ2 89 aa27.24■■□□□ 1.95
SDF4-202ENST00000360001 ZKSCAN3Q9BRR0 538 aa27.24■■□□□ 1.95
SDF4-202ENST00000360001 HPS5Q9UPZ3 1129 aa27.24■■□□□ 1.95
SDF4-202ENST00000360001 RANBP6O60518 1105 aaKnown RBP27.24■■□□□ 1.95
SDF4-202ENST00000360001 CCT2P78371 535 aaKnown RBP27.24■■□□□ 1.95
SDF4-202ENST00000360001 PICALMQ13492 652 aa27.24■■□□□ 1.95
SDF4-202ENST00000360001 ZBTB12Q9Y330 459 aaPredicted RBP27.24■■□□□ 1.95
SDF4-202ENST00000360001 ZDHHC9Q9Y397 364 aa27.24■■□□□ 1.95
SDF4-202ENST00000360001 GOLGA8BA8MQT2 603 aa27.23■■□□□ 1.95
SDF4-202ENST00000360001 PRELPP51888 382 aa27.23■■□□□ 1.95
SDF4-202ENST00000360001 SART3Q15020 963 aaKnown RBP27.23■■□□□ 1.95
SDF4-202ENST00000360001 TNPO1Q92973 898 aaKnown RBP27.23■■□□□ 1.95
SDF4-202ENST00000360001 CFAP100Q494V2 611 aa27.22■■□□□ 1.95
SDF4-202ENST00000360001 NCOA5Q9HCD5 579 aaKnown RBP27.22■■□□□ 1.95
SDF4-202ENST00000360001 APOA5Q6Q788 366 aa27.22■■□□□ 1.95
SDF4-202ENST00000360001 UBAC1Q9BSL1 405 aa27.22■■□□□ 1.95
SDF4-202ENST00000360001 NFIAQ12857 509 aa27.21■■□□□ 1.95
SDF4-202ENST00000360001 SEC23AQ15436 765 aa27.21■■□□□ 1.95
SDF4-202ENST00000360001 NFKBIBQ15653 356 aa27.21■■□□□ 1.95
SDF4-202ENST00000360001 AGBL3Q8NEM8 1001 aa27.21■■□□□ 1.95
SDF4-202ENST00000360001 WTAPQ15007 396 aa27.2■■□□□ 1.95
SDF4-202ENST00000360001 CIAPIN1Q6FI81 312 aa27.2■■□□□ 1.95
SDF4-202ENST00000360001 ZSCAN10Q96SZ4 725 aaPredicted RBP27.2■■□□□ 1.95
SDF4-202ENST00000360001 LLPHQ9BRT6 129 aaKnown RBP27.2■■□□□ 1.95
SDF4-202ENST00000360001 OSBPL5Q9H0X9 879 aaPredicted RBP27.2■■□□□ 1.95
SDF4-202ENST00000360001 TNKSO95271 1327 aa27.2■■□□□ 1.95
SDF4-202ENST00000360001 ERICH2A1L162 156 aa27.2■■□□□ 1.94
SDF4-202ENST00000360001 JAK2O60674 1132 aa27.2■■□□□ 1.94
SDF4-202ENST00000360001 CTDNEP1O95476 244 aa27.2■■□□□ 1.94
SDF4-202ENST00000360001 NT5C2P49902 561 aa27.2■■□□□ 1.94
SDF4-202ENST00000360001 NFXL1Q6ZNB6 911 aa27.2■■□□□ 1.94
SDF4-202ENST00000360001 C16orf86Q6ZW13 317 aa27.2■■□□□ 1.94
SDF4-202ENST00000360001 SLC44A5Q8NCS7 719 aa27.2■■□□□ 1.94
SDF4-202ENST00000360001 NSUN7Q8NE18 718 aaKnown RBP27.2■■□□□ 1.94
SDF4-202ENST00000360001 BRD1O95696 1058 aa27.19■■□□□ 1.94
SDF4-202ENST00000360001 FAM47AQ5JRC9 791 aa27.19■■□□□ 1.94
SDF4-202ENST00000360001 RAB11FIP4Q86YS3 637 aa27.19■■□□□ 1.94
SDF4-202ENST00000360001 SMARCC2Q8TAQ2 1214 aa27.19■■□□□ 1.94
SDF4-202ENST00000360001 IDI2Q9BXS1 227 aa27.19■■□□□ 1.94
SDF4-202ENST00000360001 IQCA1Q86XH1 822 aa27.18■■□□□ 1.94
SDF4-202ENST00000360001 ENAHQ8N8S7 591 aaPredicted RBP27.18■■□□□ 1.94
SDF4-202ENST00000360001 PRMT6Q96LA8 375 aaPredicted RBP27.18■■□□□ 1.94
SDF4-202ENST00000360001 MKNK2Q9HBH9 465 aa27.18■■□□□ 1.94
SDF4-202ENST00000360001 HDAC9Q9UKV0 1011 aa27.18■■□□□ 1.94
SDF4-202ENST00000360001 SYT1P21579 422 aa27.18■■□□□ 1.94
SDF4-202ENST00000360001 CACNB3P54284 484 aa27.18■■□□□ 1.94
SDF4-202ENST00000360001 TMTC2Q8N394 836 aa27.18■■□□□ 1.94
SDF4-202ENST00000360001 CHMP4CQ96CF2 233 aa27.18■■□□□ 1.94
SDF4-202ENST00000360001 CCDC69A6NI79 296 aa27.17■■□□□ 1.94
SDF4-202ENST00000360001 TTC6Q86TZ1 520 aa27.17■■□□□ 1.94
SDF4-202ENST00000360001 OGFOD1Q8N543 542 aa27.17■■□□□ 1.94
SDF4-202ENST00000360001 TDRD3Q9H7E2 651 aaKnown RBP27.17■■□□□ 1.94
SDF4-202ENST00000360001 FAM198AQ9UFP1 575 aa27.17■■□□□ 1.94
SDF4-202ENST00000360001 TSPY2A6NKD2 308 aa27.17■■□□□ 1.94
SDF4-202ENST00000360001 ZBTB43O43298 467 aa27.17■■□□□ 1.94
SDF4-202ENST00000360001 CDK8P49336 464 aa27.17■■□□□ 1.94
SDF4-202ENST00000360001 SYT17Q9BSW7 474 aa27.17■■□□□ 1.94
SDF4-202ENST00000360001 SLC12A7Q9Y666 1083 aa27.17■■□□□ 1.94
SDF4-202ENST00000360001 SPDYE2BA6NHP3 402 aa27.16■■□□□ 1.94
SDF4-202ENST00000360001 NPM3O75607 178 aaKnown RBP27.16■■□□□ 1.94
SDF4-202ENST00000360001 SPDYE6P0CI01 402 aa27.16■■□□□ 1.94
SDF4-202ENST00000360001 TNIP1Q15025 636 aa27.16■■□□□ 1.94
SDF4-202ENST00000360001 ZFPM1Q8IX07 1006 aa27.16■■□□□ 1.94
SDF4-202ENST00000360001 ZNF287Q9HBT7 754 aa27.16■■□□□ 1.94
SDF4-202ENST00000360001 RASA1P20936 1047 aa27.15■■□□□ 1.94
SDF4-202ENST00000360001 METAP2P50579 478 aaKnown RBP eCLIP27.15■■□□□ 1.945e-7■■□□□ 11.7
SDF4-202ENST00000360001 TFAP4Q01664 338 aa27.15■■□□□ 1.94
SDF4-202ENST00000360001 GABPAQ06546 454 aa27.15■■□□□ 1.94
SDF4-202ENST00000360001 MICU3Q86XE3 530 aa27.15■■□□□ 1.94
SDF4-202ENST00000360001 PTPDC1A2A3K4 754 aa27.15■■□□□ 1.94
SDF4-202ENST00000360001 FZD9O00144 591 aa27.15■■□□□ 1.94
SDF4-202ENST00000360001 STX6O43752 255 aa27.15■■□□□ 1.94
SDF4-202ENST00000360001 NMT2O60551 498 aa27.15■■□□□ 1.94
SDF4-202ENST00000360001 RXRAP19793 462 aa27.15■■□□□ 1.94
SDF4-202ENST00000360001 MYL10Q9BUA6 226 aa27.15■■□□□ 1.94
SDF4-202ENST00000360001 NID2Q14112 1375 aa27.14■■□□□ 1.94
SDF4-202ENST00000360001 WDR33Q9C0J8 1336 aaKnown RBP27.14■■□□□ 1.94
SDF4-202ENST00000360001 DHX16O60231 1041 aaKnown RBP27.14■■□□□ 1.94
SDF4-202ENST00000360001 NBR1Q14596 966 aa27.13■■□□□ 1.93
SDF4-202ENST00000360001 DLGAP5Q15398 846 aa27.13■■□□□ 1.93
SDF4-202ENST00000360001 ZNF444Q8N0Y2 327 aaPredicted RBP27.13■■□□□ 1.93
SDF4-202ENST00000360001 DDX11Q96FC9 970 aa27.13■■□□□ 1.93
SDF4-202ENST00000360001 HMGN5P82970 282 aaKnown RBP27.13■■□□□ 1.93
SDF4-202ENST00000360001 IFIT1BQ5T764 474 aaKnown RBP27.13■■□□□ 1.93
SDF4-202ENST00000360001 FOXD4L5Q5VV16 416 aaPredicted RBP27.13■■□□□ 1.93
SDF4-202ENST00000360001 SYNE3Q6ZMZ3 975 aa27.13■■□□□ 1.93
SDF4-202ENST00000360001 CLEC17AQ6ZS10 378 aa27.13■■□□□ 1.93
SDF4-202ENST00000360001 MTMR14Q8NCE2 650 aa27.13■■□□□ 1.93
SDF4-202ENST00000360001 FOXD4L4Q8WXT5 416 aaPredicted RBP27.13■■□□□ 1.93
SDF4-202ENST00000360001 FAM217BQ9NTX9 383 aaPredicted RBP27.13■■□□□ 1.93
SDF4-202ENST00000360001 CDC27P30260 824 aa27.12■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms