RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 PARK7Q99497 189 aaKnown RBP21.66■■□□□ 1.06
HDDC3-201ENST00000330334 RAB11FIP3O75154 756 aa21.65■■□□□ 1.06
HDDC3-201ENST00000330334 FOXP4Q8IVH2 680 aaPredicted RBP21.65■■□□□ 1.06
HDDC3-201ENST00000330334 CLASRPQ8N2M8 674 aaKnown RBP21.65■■□□□ 1.06
HDDC3-201ENST00000330334 CYP7A1P22680 504 aa21.64■■□□□ 1.05
HDDC3-201ENST00000330334 CAP2P40123 477 aa21.64■■□□□ 1.05
HDDC3-201ENST00000330334 MAP3K12Q12852 859 aa21.64■■□□□ 1.05
HDDC3-201ENST00000330334 NBPF11Q86T75 865 aa21.64■■□□□ 1.05
HDDC3-201ENST00000330334 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.64■■□□□ 1.05
HDDC3-201ENST00000330334 TGFBRAP1Q8WUH2 860 aa21.64■■□□□ 1.05
HDDC3-201ENST00000330334 FLT1P17948 1338 aa21.63■■□□□ 1.05
HDDC3-201ENST00000330334 IDH1O75874 414 aaKnown RBP21.63■■□□□ 1.05
HDDC3-201ENST00000330334 IL1RAPL2Q9NP60 686 aa21.63■■□□□ 1.05
HDDC3-201ENST00000330334 CPA4Q9UI42 421 aa21.63■■□□□ 1.05
HDDC3-201ENST00000330334 MAST2Q6P0Q8 1798 aa21.62■■□□□ 1.05
HDDC3-201ENST00000330334 BCRP11274 1271 aa21.62■■□□□ 1.05
HDDC3-201ENST00000330334 TTF1Q15361 905 aaPredicted RBP21.62■■□□□ 1.05
HDDC3-201ENST00000330334 ARHGAP39Q9C0H5 1083 aa21.62■■□□□ 1.05
HDDC3-201ENST00000330334 GINM1Q9NU53 330 aa21.62■■□□□ 1.05
HDDC3-201ENST00000330334 PTCH2Q9Y6C5 1203 aa21.62■■□□□ 1.05
HDDC3-201ENST00000330334 PDE4DIPQ5VU43 2346 aa21.61■■□□□ 1.05
HDDC3-201ENST00000330334 TRIM75PA6NK02 468 aa21.61■■□□□ 1.05
HDDC3-201ENST00000330334 FAM196BA6NMK8 535 aa21.61■■□□□ 1.05
HDDC3-201ENST00000330334 HOXD10P28358 340 aa21.61■■□□□ 1.05
HDDC3-201ENST00000330334 MAPKAPK5Q8IW41 473 aa21.61■■□□□ 1.05
HDDC3-201ENST00000330334 MAGEB6Q8N7X4 407 aa21.61■■□□□ 1.05
HDDC3-201ENST00000330334 PROCA1Q8NCQ7 364 aaPredicted RBP21.61■■□□□ 1.05
HDDC3-201ENST00000330334 ZNF280CQ8ND82 737 aa21.61■■□□□ 1.05
HDDC3-201ENST00000330334 ZNF333Q96JL9 665 aa21.61■■□□□ 1.05
HDDC3-201ENST00000330334 ANTXR1Q9H6X2 564 aa21.61■■□□□ 1.05
HDDC3-201ENST00000330334 USP17L5A8MUK1 530 aa21.6■■□□□ 1.05
HDDC3-201ENST00000330334 CYP2C8P10632 490 aa21.6■■□□□ 1.05
HDDC3-201ENST00000330334 PSMC4P43686 418 aa21.6■■□□□ 1.05
HDDC3-201ENST00000330334 RRP1BQ14684 758 aaKnown RBP21.6■■□□□ 1.05
HDDC3-201ENST00000330334 SLC9C1Q4G0N8 1177 aa21.6■■□□□ 1.05
HDDC3-201ENST00000330334 GADL1Q6ZQY3 521 aa21.6■■□□□ 1.05
HDDC3-201ENST00000330334 AGTPBP1Q9UPW5 1226 aa21.6■■□□□ 1.05
HDDC3-201ENST00000330334 DOCK1Q14185 1865 aa21.6■■□□□ 1.05
HDDC3-201ENST00000330334 ASNSP08243 561 aa21.59■■□□□ 1.05
HDDC3-201ENST00000330334 IFIT2P09913 472 aaKnown RBP21.59■■□□□ 1.05
HDDC3-201ENST00000330334 DYNLL1P63167 89 aaKnown RBP21.59■■□□□ 1.05
HDDC3-201ENST00000330334 SPP2Q13103 211 aa21.59■■□□□ 1.05
HDDC3-201ENST00000330334 TRIM47Q96LD4 638 aa21.59■■□□□ 1.05
HDDC3-201ENST00000330334 WDR18Q9BV38 432 aa21.59■■□□□ 1.05
HDDC3-201ENST00000330334 SRRDQ9UH36 339 aa21.59■■□□□ 1.05
HDDC3-201ENST00000330334 PALD1Q9ULE6 856 aa21.59■■□□□ 1.05
HDDC3-201ENST00000330334 NDUFB9Q9Y6M9 179 aa21.59■■□□□ 1.05
HDDC3-201ENST00000330334 HLA-DOAP06340 250 aa21.58■■□□□ 1.05
HDDC3-201ENST00000330334 CTGFP29279 349 aa21.58■■□□□ 1.05
HDDC3-201ENST00000330334 SH3D19Q5HYK7 790 aa21.58■■□□□ 1.05
HDDC3-201ENST00000330334 AS3MTQ9HBK9 375 aa21.58■■□□□ 1.05
HDDC3-201ENST00000330334 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.58■■□□□ 1.05
HDDC3-201ENST00000330334 PHIPQ8WWQ0 1821 aa21.57■■□□□ 1.04
HDDC3-201ENST00000330334 BRCA2P51587 3418 aa21.57■■□□□ 1.04
HDDC3-201ENST00000330334 POTEFA5A3E0 1075 aa21.57■■□□□ 1.04
HDDC3-201ENST00000330334 C20orf194Q5TEA3 1177 aa21.57■■□□□ 1.04
HDDC3-201ENST00000330334 CCDC84Q86UT8 332 aaPredicted RBP21.57■■□□□ 1.04
HDDC3-201ENST00000330334 CRACR2BQ8N4Y2 399 aaPredicted RBP21.57■■□□□ 1.04
HDDC3-201ENST00000330334 MIGA1Q8NAN2 632 aa21.57■■□□□ 1.04
HDDC3-201ENST00000330334 DNAJC18Q9H819 358 aa21.57■■□□□ 1.04
HDDC3-201ENST00000330334 PNMA3Q9UL41 463 aa21.57■■□□□ 1.04
HDDC3-201ENST00000330334 KIAA0100Q14667 2235 aaKnown RBP21.57■■□□□ 1.04
HDDC3-201ENST00000330334 FMNL1O95466 1100 aaPredicted RBP21.56■■□□□ 1.04
HDDC3-201ENST00000330334 OSBPP22059 807 aa21.56■■□□□ 1.04
HDDC3-201ENST00000330334 FCGRTP55899 365 aa21.56■■□□□ 1.04
HDDC3-201ENST00000330334 PABPC4Q13310 644 aaKnown RBP eCLIP21.56■■□□□ 1.045e-6■■■□□ 19
HDDC3-201ENST00000330334 RIOK1Q9BRS2 568 aaKnown RBP21.56■■□□□ 1.04
HDDC3-201ENST00000330334 TMEM106CQ9BVX2 250 aa21.56■■□□□ 1.04
HDDC3-201ENST00000330334 TRIM34Q9BYJ4 488 aa21.56■■□□□ 1.04
HDDC3-201ENST00000330334 MKI67P46013 3256 aaKnown RBP21.56■■□□□ 1.04
HDDC3-201ENST00000330334 MYO5AQ9Y4I1 1855 aaKnown RBP21.56■■□□□ 1.04
HDDC3-201ENST00000330334 APBB1O00213 710 aa21.55■■□□□ 1.04
HDDC3-201ENST00000330334 USP5P45974 858 aa21.55■■□□□ 1.04
HDDC3-201ENST00000330334 SLC9C2Q5TAH2 1124 aa21.55■■□□□ 1.04
HDDC3-201ENST00000330334 SMCR8Q8TEV9 937 aaPredicted RBP21.55■■□□□ 1.04
HDDC3-201ENST00000330334 EHD4Q9H223 541 aa21.55■■□□□ 1.04
HDDC3-201ENST00000330334 ATP5JP18859 108 aa21.54■■□□□ 1.04
HDDC3-201ENST00000330334 BACE1P56817 501 aa21.54■■□□□ 1.04
HDDC3-201ENST00000330334 TREML2Q5T2D2 321 aa21.54■■□□□ 1.04
HDDC3-201ENST00000330334 TTC6Q86TZ1 520 aa21.54■■□□□ 1.04
HDDC3-201ENST00000330334 SAP30BPQ9UHR5 308 aaKnown RBP21.54■■□□□ 1.04
HDDC3-201ENST00000330334 PTPRFP10586 1907 aa21.54■■□□□ 1.04
HDDC3-201ENST00000330334 FOCADQ5VW36 1801 aa21.54■■□□□ 1.04
HDDC3-201ENST00000330334 MAGEB6P1A0A0J9YX57 407 aa21.53■■□□□ 1.04
HDDC3-201ENST00000330334 C19orf81C9J6K1 198 aa21.53■■□□□ 1.04
HDDC3-201ENST00000330334 PDE6AP16499 860 aa21.53■■□□□ 1.04
HDDC3-201ENST00000330334 GCLCP48506 637 aaPredicted RBP21.53■■□□□ 1.04
HDDC3-201ENST00000330334 HMGCS2P54868 508 aa21.53■■□□□ 1.04
HDDC3-201ENST00000330334 TATDN1Q6P1N9 297 aa21.53■■□□□ 1.04
HDDC3-201ENST00000330334 SERPINB13Q9UIV8 391 aa21.53■■□□□ 1.04
HDDC3-201ENST00000330334 GOLIM4O00461 696 aa21.52■■□□□ 1.04
HDDC3-201ENST00000330334 JAG1P78504 1218 aa21.52■■□□□ 1.04
HDDC3-201ENST00000330334 FAM110CQ1W6H9 321 aa21.52■■□□□ 1.04
HDDC3-201ENST00000330334 RAET1EQ8TD07 263 aa21.52■■□□□ 1.04
HDDC3-201ENST00000330334 SH3TC2Q8TF17 1288 aa21.52■■□□□ 1.04
HDDC3-201ENST00000330334 LRRCC1Q9C099 1032 aa21.52■■□□□ 1.04
HDDC3-201ENST00000330334 SIPA1L1O43166 1804 aa21.52■■□□□ 1.04
HDDC3-201ENST00000330334 MYPNQ86TC9 1320 aa21.52■■□□□ 1.03
HDDC3-201ENST00000330334 TCRBV5S4A2TA0A5A2 114 aa21.51■■□□□ 1.03
HDDC3-201ENST00000330334 USP17L10C9JJH3 530 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms