RNA–Protein interactions for RNA: ENST00000615843.4

SPAST-203, Transcript of spastin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SPAST, Length 5,212 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-203ENST00000615843 KRTAP4-3Q9BYR4 195 aa5.68□□□□□ -1.5
SPAST-203ENST00000615843 MT3P25713 68 aa5.63□□□□□ -1.51
SPAST-203ENST00000615843 BIRC6Q9NR09 4857 aa5.63□□□□□ -1.51
SPAST-203ENST00000615843 KRTAP19-7Q3SYF9 63 aa5.61□□□□□ -1.51
SPAST-203ENST00000615843 ABCA13Q86UQ4 5058 aa5.56□□□□□ -1.52
SPAST-203ENST00000615843 EPPK1P58107 5090 aaKnown RBP5.55□□□□□ -1.52
SPAST-203ENST00000615843 KRTAP4-9Q9BYQ8 210 aa5.47□□□□□ -1.53
SPAST-203ENST00000615843 KRTAP19-6Q3LI70 58 aa5.47□□□□□ -1.53
SPAST-203ENST00000615843 UBR4Q5T4S7 5183 aa5.45□□□□□ -1.54
SPAST-203ENST00000615843 HMCN2Q8NDA2 5059 aa5.44□□□□□ -1.54
SPAST-203ENST00000615843 LCE2DQ5TA82 110 aaPredicted RBP5.43□□□□□ -1.54
SPAST-203ENST00000615843 MT1AP04731 61 aa5.41□□□□□ -1.54
SPAST-203ENST00000615843 KRTAP9-6A8MVA2 160 aa5.41□□□□□ -1.54
SPAST-203ENST00000615843 RNF213Q63HN8 5207 aa5.33□□□□□ -1.56
SPAST-203ENST00000615843 FAT4Q6V0I7 4981 aa5.32□□□□□ -1.56
SPAST-203ENST00000615843 MT4P47944 62 aa5.28□□□□□ -1.56
SPAST-203ENST00000615843 LCE1BQ5T7P3 118 aa5.27□□□□□ -1.57
SPAST-203ENST00000615843 LCE1DQ5T752 114 aa5.25□□□□□ -1.57
SPAST-203ENST00000615843 OBSCNQ5VST9 7968 aa5.16□□□□□ -1.58
SPAST-203ENST00000615843 KRTAP6-2Q3LI66 62 aa5.16□□□□□ -1.58
SPAST-203ENST00000615843 KRTAP6-1Q3LI64 71 aa5.12□□□□□ -1.59
SPAST-203ENST00000615843 LCE2AQ5TA79 106 aaPredicted RBP5.11□□□□□ -1.59
SPAST-203ENST00000615843 FSIP2Q5CZC0 6907 aa5.11□□□□□ -1.59
SPAST-203ENST00000615843 MUC2Q02817 5179 aa5.09□□□□□ -1.6
SPAST-203ENST00000615843 KRTAP9-7A8MTY7 169 aa5.06□□□□□ -1.6
SPAST-203ENST00000615843 SYNE2Q8WXH0 6885 aaKnown RBP5.01□□□□□ -1.61
SPAST-203ENST00000615843 KRTAP9-4Q9BYQ2 154 aa4.95□□□□□ -1.62
SPAST-203ENST00000615843 KRTAP9-2Q9BYQ4 174 aa4.95□□□□□ -1.62
SPAST-203ENST00000615843 LCE5AQ5TCM9 118 aa4.94□□□□□ -1.62
SPAST-203ENST00000615843 LCE1AQ5T7P2 110 aa4.81□□□□□ -1.64
SPAST-203ENST00000615843 FCGBPQ9Y6R7 5405 aaPredicted RBP4.8□□□□□ -1.64
SPAST-203ENST00000615843 USH2AO75445 5202 aa4.7□□□□□ -1.66
SPAST-203ENST00000615843 KRTAP2-2Q9BYT5 123 aa4.69□□□□□ -1.66
SPAST-203ENST00000615843 KMT2DO14686 5537 aa4.52□□□□□ -1.69
SPAST-203ENST00000615843 LCE4AQ5TA78 99 aa4.51□□□□□ -1.69
SPAST-203ENST00000615843 DSTQ03001 7570 aaKnown RBP4.51□□□□□ -1.69
SPAST-203ENST00000615843 KRTAP6-3Q3LI67 103 aa4.5□□□□□ -1.69
SPAST-203ENST00000615843 KRTAP9-6A0A140TA67 174 aa4.39□□□□□ -1.71
SPAST-203ENST00000615843 KRTAP20-1Q3LI63 56 aa4.37□□□□□ -1.71
SPAST-203ENST00000615843 LCE1CQ5T751 118 aa4.33□□□□□ -1.72
SPAST-203ENST00000615843 LCE1EQ5T753 118 aa4.33□□□□□ -1.72
SPAST-203ENST00000615843 LCE1FQ5T754 118 aa4.33□□□□□ -1.72
SPAST-203ENST00000615843 KRTAP4-11Q9BYQ6 195 aa4.31□□□□□ -1.72
SPAST-203ENST00000615843 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.24□□□□□ -1.73
SPAST-203ENST00000615843 SSPOA2VEC9 5147 aa4.23□□□□□ -1.73
SPAST-203ENST00000615843 MUC19Q7Z5P9 8384 aa4.15□□□□□ -1.75
SPAST-203ENST00000615843 KRTAP5-5Q701N2 237 aaPredicted RBP4.12□□□□□ -1.75
SPAST-203ENST00000615843 MUC12Q9UKN1 5478 aa4.12□□□□□ -1.75
SPAST-203ENST00000615843 MACF1Q9UPN3 7388 aaKnown RBP4.1□□□□□ -1.75
SPAST-203ENST00000615843 KRTAP5-9P26371 169 aa3.99□□□□□ -1.77
SPAST-203ENST00000615843 KRTAP4-6Q9BYQ5 205 aa3.97□□□□□ -1.77
SPAST-203ENST00000615843 KRTAP20-2Q3LI61 65 aa3.91□□□□□ -1.78
SPAST-203ENST00000615843 NEBP20929 6669 aa3.82□□□□□ -1.8
SPAST-203ENST00000615843 KRTAP9-9Q9BYP9 154 aa3.81□□□□□ -1.8
SPAST-203ENST00000615843 MDN1Q9NU22 5596 aa3.81□□□□□ -1.8
SPAST-203ENST00000615843 KRTAP4-4Q9BYR3 166 aa3.76□□□□□ -1.81
SPAST-203ENST00000615843 KRTAP4-12Q9BQ66 201 aa3.55□□□□□ -1.84
SPAST-203ENST00000615843 KRTAP4-2Q9BYR5 136 aa3.55□□□□□ -1.84
SPAST-203ENST00000615843 KRTAP5-4Q6L8H1 288 aa3.53□□□□□ -1.84
SPAST-203ENST00000615843 GPR98Q8WXG9 6306 aa3.47□□□□□ -1.85
SPAST-203ENST00000615843 MUC5ACP98088 5654 aa3.36□□□□□ -1.87
SPAST-203ENST00000615843 HMCN1Q96RW7 5635 aa3.21□□□□□ -1.9
SPAST-203ENST00000615843 KRTAP5-10Q6L8G5 202 aa3.19□□□□□ -1.9
SPAST-203ENST00000615843 KRTAP5-3Q6L8H2 238 aa3.08□□□□□ -1.92
SPAST-203ENST00000615843 AHNAK2Q8IVF2 5795 aa2.93□□□□□ -1.94
SPAST-203ENST00000615843 KRTAP5-2Q701N4 177 aa2.9□□□□□ -1.94
SPAST-203ENST00000615843 KRTAP5-8O75690 187 aa2.77□□□□□ -1.97
SPAST-203ENST00000615843 KRTAP5-1Q6L8H4 278 aa2.73□□□□□ -1.97
SPAST-203ENST00000615843 MUC5BQ9HC84 5762 aaPredicted RBP2.71□□□□□ -1.98
SPAST-203ENST00000615843 KRTAP21-1Q3LI58 79 aa2.65□□□□□ -1.98
SPAST-203ENST00000615843 KRTAP21-2Q3LI59 83 aa2.63□□□□□ -1.99
SPAST-203ENST00000615843 KRTAP5-11Q6L8G4 156 aa2.63□□□□□ -1.99
SPAST-203ENST00000615843 AHNAKQ09666 5890 aaKnown RBP2.47□□□□□ -2.01
SPAST-203ENST00000615843 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.4□□□□□ -2.03
SPAST-203ENST00000615843 PHGR1C9JFL3 82 aa2.39□□□□□ -2.03
SPAST-203ENST00000615843 KRTAP5-7Q6L8G8 165 aa2.07□□□□□ -2.08
SPAST-203ENST00000615843 MUC16Q8WXI7 14507 aa1.55□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 1019.5 ms