RNA–Protein interactions for RNA: ENST00000611571.4

MUC1-223, Transcript of mucin 1, cell surface associated, human

APPRIS ALT2 TSL 5 BASIC

Gene MUC1, Length 4,170 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MUC1-223	ENST00000611571	LOC100996750	A0A140TA64	210 aa		4.58	□□□□□ -1.68
MUC1-223	ENST00000611571	MT1E	P04732	61 aa		4.54	□□□□□ -1.68
MUC1-223	ENST00000611571	SYNE2	Q8WXH0	6885 aa	Known RBP	4.53	□□□□□ -1.68
MUC1-223	ENST00000611571	KRTAP19-4	Q3LI73	84 aa		4.48	□□□□□ -1.69
MUC1-223	ENST00000611571	KRTAP19-7	Q3SYF9	63 aa		4.46	□□□□□ -1.69
MUC1-223	ENST00000611571	KRTAP19-3	Q7Z4W3	81 aa		4.43	□□□□□ -1.7
MUC1-223	ENST00000611571	KRTAP9-6	A8MVA2	160 aa		4.43	□□□□□ -1.7
MUC1-223	ENST00000611571	SPRR2E	P22531	72 aa		4.42	□□□□□ -1.7
MUC1-223	ENST00000611571	SPRR2B	P35325	72 aa		4.42	□□□□□ -1.7
MUC1-223	ENST00000611571	SPRR2A	P35326	72 aa		4.42	□□□□□ -1.7
MUC1-223	ENST00000611571	LCE3D	Q9BYE3	92 aa		4.37	□□□□□ -1.71
MUC1-223	ENST00000611571	MT1M	Q8N339	61 aa		4.34	□□□□□ -1.71
MUC1-223	ENST00000611571	LCE2A	Q5TA79	106 aa	Predicted RBP	4.33	□□□□□ -1.72
MUC1-223	ENST00000611571	MUC12	Q9UKN1	5478 aa		4.32	□□□□□ -1.72
MUC1-223	ENST00000611571	KRTAP4-9	Q9BYQ8	210 aa		4.32	□□□□□ -1.72
MUC1-223	ENST00000611571	LCE3E	Q5T5B0	92 aa		4.28	□□□□□ -1.73
MUC1-223	ENST00000611571	SPRR2D	P22532	72 aa		4.22	□□□□□ -1.73
MUC1-223	ENST00000611571	KRTAP19-6	Q3LI70	58 aa		4.21	□□□□□ -1.73
MUC1-223	ENST00000611571	KRTAP2-3	P0C7H8	128 aa		4.2	□□□□□ -1.74
MUC1-223	ENST00000611571	KRTAP2-4	Q9BYR9	128 aa		4.2	□□□□□ -1.74
MUC1-223	ENST00000611571	KRTAP2-1	Q9BYU5	128 aa		4.2	□□□□□ -1.74
MUC1-223	ENST00000611571	PRM1	P04553	51 aa		4.12	□□□□□ -1.75
MUC1-223	ENST00000611571	MACF1	Q9UPN3	7388 aa	Known RBP	4.11	□□□□□ -1.75
MUC1-223	ENST00000611571	SSPO	A2VEC9	5147 aa		4.07	□□□□□ -1.76
MUC1-223	ENST00000611571	LCE2D	Q5TA82	110 aa	Predicted RBP	4	□□□□□ -1.77
MUC1-223	ENST00000611571	KRTAP9-2	Q9BYQ4	174 aa		3.96	□□□□□ -1.77
MUC1-223	ENST00000611571	KRTAP6-1	Q3LI64	71 aa		3.96	□□□□□ -1.78
MUC1-223	ENST00000611571	MT4	P47944	62 aa		3.95	□□□□□ -1.78
MUC1-223	ENST00000611571	MT3	P25713	68 aa		3.92	□□□□□ -1.78
MUC1-223	ENST00000611571	MT1A	P04731	61 aa		3.91	□□□□□ -1.78
MUC1-223	ENST00000611571	LCE5A	Q5TCM9	118 aa		3.87	□□□□□ -1.79
MUC1-223	ENST00000611571	KRTAP9-7	A8MTY7	169 aa		3.85	□□□□□ -1.79
MUC1-223	ENST00000611571	MUC19	Q7Z5P9	8384 aa		3.82	□□□□□ -1.8
MUC1-223	ENST00000611571	LCE1D	Q5T752	114 aa		3.78	□□□□□ -1.8
MUC1-223	ENST00000611571	LCE1B	Q5T7P3	118 aa		3.78	□□□□□ -1.8
MUC1-223	ENST00000611571	KRTAP6-2	Q3LI66	62 aa		3.77	□□□□□ -1.81
MUC1-223	ENST00000611571	MDN1	Q9NU22	5596 aa		3.75	□□□□□ -1.81
MUC1-223	ENST00000611571	LCE1A	Q5T7P2	110 aa		3.74	□□□□□ -1.81
MUC1-223	ENST00000611571	KRTAP9-6	A0A140TA67	174 aa		3.67	□□□□□ -1.82
MUC1-223	ENST00000611571	KRTAP9-4	Q9BYQ2	154 aa		3.61	□□□□□ -1.83
MUC1-223	ENST00000611571	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	3.44	□□□□□ -1.86
MUC1-223	ENST00000611571	KRTAP6-3	Q3LI67	103 aa		3.39	□□□□□ -1.87
MUC1-223	ENST00000611571	KRTAP2-2	Q9BYT5	123 aa		3.33	□□□□□ -1.88
MUC1-223	ENST00000611571	KRTAP4-6	Q9BYQ5	205 aa		3.29	□□□□□ -1.88
MUC1-223	ENST00000611571	NEB	P20929	6669 aa		3.29	□□□□□ -1.88
MUC1-223	ENST00000611571	KRTAP20-1	Q3LI63	56 aa		3.26	□□□□□ -1.89
MUC1-223	ENST00000611571	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.26	□□□□□ -1.89
MUC1-223	ENST00000611571	KRTAP5-9	P26371	169 aa		3.24	□□□□□ -1.89
MUC1-223	ENST00000611571	LCE1E	Q5T753	118 aa		3.17	□□□□□ -1.9
MUC1-223	ENST00000611571	MUC5AC	P98088	5654 aa		3.17	□□□□□ -1.9
MUC1-223	ENST00000611571	KRTAP4-11	Q9BYQ6	195 aa		3.16	□□□□□ -1.9
MUC1-223	ENST00000611571	LCE4A	Q5TA78	99 aa		3.16	□□□□□ -1.9
MUC1-223	ENST00000611571	HMCN1	Q96RW7	5635 aa		3.04	□□□□□ -1.92
MUC1-223	ENST00000611571	KRTAP20-2	Q3LI61	65 aa		3.04	□□□□□ -1.92
MUC1-223	ENST00000611571	LCE1C	Q5T751	118 aa		2.95	□□□□□ -1.94
MUC1-223	ENST00000611571	LCE1F	Q5T754	118 aa		2.95	□□□□□ -1.94
MUC1-223	ENST00000611571	GPR98	Q8WXG9	6306 aa		2.94	□□□□□ -1.94
MUC1-223	ENST00000611571	KRTAP4-4	Q9BYR3	166 aa		2.93	□□□□□ -1.94
MUC1-223	ENST00000611571	KRTAP4-12	Q9BQ66	201 aa		2.8	□□□□□ -1.96
MUC1-223	ENST00000611571	KRTAP4-2	Q9BYR5	136 aa		2.8	□□□□□ -1.96
MUC1-223	ENST00000611571	KRTAP5-4	Q6L8H1	288 aa		2.68	□□□□□ -1.98
MUC1-223	ENST00000611571	AHNAK2	Q8IVF2	5795 aa		2.62	□□□□□ -1.99
MUC1-223	ENST00000611571	KRTAP9-9	Q9BYP9	154 aa		2.62	□□□□□ -1.99
MUC1-223	ENST00000611571	KRTAP5-10	Q6L8G5	202 aa		2.49	□□□□□ -2.01
MUC1-223	ENST00000611571	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.41	□□□□□ -2.02
MUC1-223	ENST00000611571	KRTAP5-3	Q6L8H2	238 aa		2.39	□□□□□ -2.03
MUC1-223	ENST00000611571	KRTAP5-2	Q701N4	177 aa		2.39	□□□□□ -2.03
MUC1-223	ENST00000611571	KRTAP5-8	O75690	187 aa		2.31	□□□□□ -2.04
MUC1-223	ENST00000611571	AHNAK	Q09666	5890 aa	Known RBP	2.21	□□□□□ -2.06
MUC1-223	ENST00000611571	KRTAP5-1	Q6L8H4	278 aa		2.17	□□□□□ -2.06
MUC1-223	ENST00000611571	KRTAP21-2	Q3LI59	83 aa		2.17	□□□□□ -2.06
MUC1-223	ENST00000611571	KRTAP5-11	Q6L8G4	156 aa		1.99	□□□□□ -2.09
MUC1-223	ENST00000611571	KRTAP21-1	Q3LI58	79 aa		1.91	□□□□□ -2.1
MUC1-223	ENST00000611571	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	1.85	□□□□□ -2.11
MUC1-223	ENST00000611571	KRTAP5-7	Q6L8G8	165 aa		1.74	□□□□□ -2.13
MUC1-223	ENST00000611571	PHGR1	C9JFL3	82 aa		1.72	□□□□□ -2.13
MUC1-223	ENST00000611571	MUC16	Q8WXI7	14507 aa		1.22	□□□□□ -2.21

Retrieved 77 of 20,778 RNA–protein pairs in 90.4 ms