RNA–Protein interactions for RNA: ENST00000611132.4

VPS36-207, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 1 (best) BASIC

Gene VPS36, Length 4,607 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-207ENST00000611132 KRTAP9-6A8MVA2 160 aa4.63□□□□□ -1.67
VPS36-207ENST00000611132 LCE3EQ5T5B0 92 aa4.6□□□□□ -1.67
VPS36-207ENST00000611132 SYNE1Q8NF91 8797 aaKnown RBP4.59□□□□□ -1.67
VPS36-207ENST00000611132 LOC100996750A0A140TA64 210 aa4.57□□□□□ -1.68
VPS36-207ENST00000611132 MT1MQ8N339 61 aa4.54□□□□□ -1.68
VPS36-207ENST00000611132 KRTAP4-3Q9BYR4 195 aa4.53□□□□□ -1.68
VPS36-207ENST00000611132 KRTAP19-6Q3LI70 58 aa4.4□□□□□ -1.71
VPS36-207ENST00000611132 PRM1P04553 51 aa4.38□□□□□ -1.71
VPS36-207ENST00000611132 SPRR2EP22531 72 aa4.38□□□□□ -1.71
VPS36-207ENST00000611132 SPRR2BP35325 72 aa4.38□□□□□ -1.71
VPS36-207ENST00000611132 SPRR2AP35326 72 aa4.38□□□□□ -1.71
VPS36-207ENST00000611132 LCE2AQ5TA79 106 aaPredicted RBP4.37□□□□□ -1.71
VPS36-207ENST00000611132 FSIP2Q5CZC0 6907 aa4.32□□□□□ -1.72
VPS36-207ENST00000611132 KRTAP4-9Q9BYQ8 210 aa4.29□□□□□ -1.72
VPS36-207ENST00000611132 KMT2DO14686 5537 aa4.22□□□□□ -1.73
VPS36-207ENST00000611132 SPRR2DP22532 72 aa4.21□□□□□ -1.74
VPS36-207ENST00000611132 MT1AP04731 61 aa4.21□□□□□ -1.74
VPS36-207ENST00000611132 FCGBPQ9Y6R7 5405 aaPredicted RBP4.17□□□□□ -1.74
VPS36-207ENST00000611132 MT3P25713 68 aa4.15□□□□□ -1.74
VPS36-207ENST00000611132 USH2AO75445 5202 aa4.12□□□□□ -1.75
VPS36-207ENST00000611132 KRTAP6-1Q3LI64 71 aa4.08□□□□□ -1.76
VPS36-207ENST00000611132 LCE2DQ5TA82 110 aaPredicted RBP4.07□□□□□ -1.76
VPS36-207ENST00000611132 OBSCNQ5VST9 7968 aa4.06□□□□□ -1.76
VPS36-207ENST00000611132 LCE5AQ5TCM9 118 aa4.06□□□□□ -1.76
VPS36-207ENST00000611132 DSTQ03001 7570 aaKnown RBP4.04□□□□□ -1.76
VPS36-207ENST00000611132 KRTAP9-7A8MTY7 169 aa4.01□□□□□ -1.77
VPS36-207ENST00000611132 KRTAP9-2Q9BYQ4 174 aa4□□□□□ -1.77
VPS36-207ENST00000611132 KRTAP6-2Q3LI66 62 aa3.97□□□□□ -1.77
VPS36-207ENST00000611132 SYNE2Q8WXH0 6885 aaKnown RBP3.96□□□□□ -1.78
VPS36-207ENST00000611132 KRTAP9-4Q9BYQ2 154 aa3.86□□□□□ -1.79
VPS36-207ENST00000611132 MUC12Q9UKN1 5478 aa3.84□□□□□ -1.8
VPS36-207ENST00000611132 LCE1AQ5T7P2 110 aa3.77□□□□□ -1.81
VPS36-207ENST00000611132 MT4P47944 62 aa3.75□□□□□ -1.81
VPS36-207ENST00000611132 SSPOA2VEC9 5147 aa3.72□□□□□ -1.81
VPS36-207ENST00000611132 LCE1DQ5T752 114 aa3.71□□□□□ -1.81
VPS36-207ENST00000611132 LCE1BQ5T7P3 118 aa3.68□□□□□ -1.82
VPS36-207ENST00000611132 KRTAP2-2Q9BYT5 123 aa3.66□□□□□ -1.82
VPS36-207ENST00000611132 KRTAP6-3Q3LI67 103 aa3.58□□□□□ -1.84
VPS36-207ENST00000611132 KRTAP5-5Q701N2 237 aaPredicted RBP3.56□□□□□ -1.84
VPS36-207ENST00000611132 KRTAP9-6A0A140TA67 174 aa3.53□□□□□ -1.84
VPS36-207ENST00000611132 MACF1Q9UPN3 7388 aaKnown RBP3.5□□□□□ -1.85
VPS36-207ENST00000611132 KRTAP5-9P26371 169 aa3.4□□□□□ -1.86
VPS36-207ENST00000611132 LCE4AQ5TA78 99 aa3.35□□□□□ -1.87
VPS36-207ENST00000611132 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.27□□□□□ -1.89
VPS36-207ENST00000611132 KRTAP4-11Q9BYQ6 195 aa3.25□□□□□ -1.89
VPS36-207ENST00000611132 MDN1Q9NU22 5596 aa3.23□□□□□ -1.89
VPS36-207ENST00000611132 KRTAP4-6Q9BYQ5 205 aa3.17□□□□□ -1.9
VPS36-207ENST00000611132 MUC19Q7Z5P9 8384 aa3.12□□□□□ -1.91
VPS36-207ENST00000611132 KRTAP20-2Q3LI61 65 aa3.1□□□□□ -1.91
VPS36-207ENST00000611132 LCE1EQ5T753 118 aa3.07□□□□□ -1.92
VPS36-207ENST00000611132 KRTAP20-1Q3LI63 56 aa3.02□□□□□ -1.93
VPS36-207ENST00000611132 KRTAP5-4Q6L8H1 288 aa2.91□□□□□ -1.94
VPS36-207ENST00000611132 NEBP20929 6669 aa2.91□□□□□ -1.94
VPS36-207ENST00000611132 LCE1CQ5T751 118 aa2.83□□□□□ -1.96
VPS36-207ENST00000611132 LCE1FQ5T754 118 aa2.83□□□□□ -1.96
VPS36-207ENST00000611132 MUC5ACP98088 5654 aa2.77□□□□□ -1.97
VPS36-207ENST00000611132 KRTAP4-4Q9BYR3 166 aa2.76□□□□□ -1.97
VPS36-207ENST00000611132 KRTAP5-10Q6L8G5 202 aa2.71□□□□□ -1.98
VPS36-207ENST00000611132 KRTAP5-2Q701N4 177 aa2.63□□□□□ -1.99
VPS36-207ENST00000611132 HMCN1Q96RW7 5635 aa2.61□□□□□ -1.99
VPS36-207ENST00000611132 KRTAP9-9Q9BYP9 154 aa2.59□□□□□ -2
VPS36-207ENST00000611132 KRTAP4-12Q9BQ66 201 aa2.56□□□□□ -2
VPS36-207ENST00000611132 KRTAP4-2Q9BYR5 136 aa2.56□□□□□ -2
VPS36-207ENST00000611132 KRTAP5-3Q6L8H2 238 aa2.5□□□□□ -2.01
VPS36-207ENST00000611132 KRTAP5-1Q6L8H4 278 aa2.34□□□□□ -2.03
VPS36-207ENST00000611132 GPR98Q8WXG9 6306 aa2.31□□□□□ -2.04
VPS36-207ENST00000611132 AHNAK2Q8IVF2 5795 aa2.31□□□□□ -2.04
VPS36-207ENST00000611132 KRTAP21-2Q3LI59 83 aa2.31□□□□□ -2.04
VPS36-207ENST00000611132 KRTAP21-1Q3LI58 79 aa2.26□□□□□ -2.05
VPS36-207ENST00000611132 KRTAP5-8O75690 187 aa2.2□□□□□ -2.06
VPS36-207ENST00000611132 KRTAP5-11Q6L8G4 156 aa2.19□□□□□ -2.06
VPS36-207ENST00000611132 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.18□□□□□ -2.06
VPS36-207ENST00000611132 MUC5BQ9HC84 5762 aaPredicted RBP2.16□□□□□ -2.06
VPS36-207ENST00000611132 AHNAKQ09666 5890 aaKnown RBP1.91□□□□□ -2.1
VPS36-207ENST00000611132 PHGR1C9JFL3 82 aa1.85□□□□□ -2.11
VPS36-207ENST00000611132 KRTAP5-7Q6L8G8 165 aa1.85□□□□□ -2.11
VPS36-207ENST00000611132 MUC16Q8WXI7 14507 aa1.22□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 123.4 ms