RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 SPRR2FQ96RM1 72 aa7.01□□□□□ -1.29
TRIM47-204ENST00000587339 KRTAP9-6A0A140TA67 174 aa6.99□□□□□ -1.29
TRIM47-204ENST00000587339 KRTAP19-4Q3LI73 84 aa6.98□□□□□ -1.29
TRIM47-204ENST00000587339 MUC12Q9UKN1 5478 aa6.95□□□□□ -1.3
TRIM47-204ENST00000587339 KRTAP19-3Q7Z4W3 81 aa6.89□□□□□ -1.31
TRIM47-204ENST00000587339 KRTAP4-7Q9BYR0 210 aa6.87□□□□□ -1.31
TRIM47-204ENST00000587339 KRTAP5-9P26371 169 aa6.86□□□□□ -1.31
TRIM47-204ENST00000587339 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.83□□□□□ -1.32
TRIM47-204ENST00000587339 MT1GP13640 62 aa6.83□□□□□ -1.32
TRIM47-204ENST00000587339 LCE5AQ5TCM9 118 aa6.75□□□□□ -1.33
TRIM47-204ENST00000587339 MT1MQ8N339 61 aa6.75□□□□□ -1.33
TRIM47-204ENST00000587339 KRTAP6-3Q3LI67 103 aa6.69□□□□□ -1.34
TRIM47-204ENST00000587339 MDN1Q9NU22 5596 aa6.67□□□□□ -1.34
TRIM47-204ENST00000587339 LCE1AQ5T7P2 110 aa6.66□□□□□ -1.34
TRIM47-204ENST00000587339 KRTAP9-6A8MVA2 160 aa6.65□□□□□ -1.34
TRIM47-204ENST00000587339 KRTAP4-3Q9BYR4 195 aa6.64□□□□□ -1.35
TRIM47-204ENST00000587339 SPRR2EP22531 72 aa6.61□□□□□ -1.35
TRIM47-204ENST00000587339 SPRR2BP35325 72 aa6.61□□□□□ -1.35
TRIM47-204ENST00000587339 SPRR2AP35326 72 aa6.61□□□□□ -1.35
TRIM47-204ENST00000587339 DSTQ03001 7570 aaKnown RBP6.5□□□□□ -1.37
TRIM47-204ENST00000587339 INE1O15225 51 aa6.48□□□□□ -1.37
TRIM47-204ENST00000587339 LOC100996750A0A140TA64 210 aa6.44□□□□□ -1.38
TRIM47-204ENST00000587339 KRTAP9-7A8MTY7 169 aa6.43□□□□□ -1.38
TRIM47-204ENST00000587339 SPRR2DP22532 72 aa6.37□□□□□ -1.39
TRIM47-204ENST00000587339 NEBP20929 6669 aa6.22□□□□□ -1.41
TRIM47-204ENST00000587339 KRTAP2-3P0C7H8 128 aa6.15□□□□□ -1.42
TRIM47-204ENST00000587339 KRTAP2-4Q9BYR9 128 aa6.15□□□□□ -1.42
TRIM47-204ENST00000587339 KRTAP2-1Q9BYU5 128 aa6.15□□□□□ -1.42
TRIM47-204ENST00000587339 LCE3BQ5TA77 95 aa6.1□□□□□ -1.43
TRIM47-204ENST00000587339 KRTAP5-5Q701N2 237 aaPredicted RBP6.07□□□□□ -1.44
TRIM47-204ENST00000587339 MT1AP04731 61 aa5.97□□□□□ -1.45
TRIM47-204ENST00000587339 KRTAP6-1Q3LI64 71 aa5.94□□□□□ -1.46
TRIM47-204ENST00000587339 SYNE1Q8NF91 8797 aaKnown RBP5.78□□□□□ -1.48
TRIM47-204ENST00000587339 KRTAP5-4Q6L8H1 288 aa5.74□□□□□ -1.49
TRIM47-204ENST00000587339 KRTAP2-2Q9BYT5 123 aa5.72□□□□□ -1.49
TRIM47-204ENST00000587339 KRTAP20-1Q3LI63 56 aa5.7□□□□□ -1.5
TRIM47-204ENST00000587339 KRTAP9-4Q9BYQ2 154 aa5.68□□□□□ -1.5
TRIM47-204ENST00000587339 KRTAP12-4P60329 112 aa5.64□□□□□ -1.51
TRIM47-204ENST00000587339 LCE4AQ5TA78 99 aa5.62□□□□□ -1.51
TRIM47-204ENST00000587339 MT4P47944 62 aa5.54□□□□□ -1.52
TRIM47-204ENST00000587339 KRTAP4-6Q9BYQ5 205 aa5.5□□□□□ -1.53
TRIM47-204ENST00000587339 KRTAP4-9Q9BYQ8 210 aa5.5□□□□□ -1.53
TRIM47-204ENST00000587339 KRTAP6-2Q3LI66 62 aa5.46□□□□□ -1.53
TRIM47-204ENST00000587339 MT3P25713 68 aa5.42□□□□□ -1.54
TRIM47-204ENST00000587339 LCE1DQ5T752 114 aa5.41□□□□□ -1.54
TRIM47-204ENST00000587339 KRTAP20-2Q3LI61 65 aa5.38□□□□□ -1.55
TRIM47-204ENST00000587339 HMCN1Q96RW7 5635 aa5.35□□□□□ -1.55
TRIM47-204ENST00000587339 LCE3DQ9BYE3 92 aa5.3□□□□□ -1.56
TRIM47-204ENST00000587339 KRTAP5-2Q701N4 177 aa5.22□□□□□ -1.57
TRIM47-204ENST00000587339 KRTAP5-3Q6L8H2 238 aa5.17□□□□□ -1.58
TRIM47-204ENST00000587339 OBSCNQ5VST9 7968 aa5.16□□□□□ -1.58
TRIM47-204ENST00000587339 LCE3EQ5T5B0 92 aa5.15□□□□□ -1.58
TRIM47-204ENST00000587339 LCE1EQ5T753 118 aa4.68□□□□□ -1.66
TRIM47-204ENST00000587339 KRTAP4-11Q9BYQ6 195 aa4.65□□□□□ -1.67
TRIM47-204ENST00000587339 AHNAK2Q8IVF2 5795 aa4.62□□□□□ -1.67
TRIM47-204ENST00000587339 PRM1P04553 51 aa4.56□□□□□ -1.68
TRIM47-204ENST00000587339 KRTAP5-1Q6L8H4 278 aa4.52□□□□□ -1.69
TRIM47-204ENST00000587339 KRTAP5-8O75690 187 aa4.46□□□□□ -1.69
TRIM47-204ENST00000587339 LCE1BQ5T7P3 118 aa4.43□□□□□ -1.7
TRIM47-204ENST00000587339 KRTAP5-10Q6L8G5 202 aa4.41□□□□□ -1.7
TRIM47-204ENST00000587339 MUC5ACP98088 5654 aa4.37□□□□□ -1.71
TRIM47-204ENST00000587339 LCE1CQ5T751 118 aa4.36□□□□□ -1.71
TRIM47-204ENST00000587339 KRTAP4-2Q9BYR5 136 aa4.36□□□□□ -1.71
TRIM47-204ENST00000587339 KRTAP5-7Q6L8G8 165 aa4.33□□□□□ -1.72
TRIM47-204ENST00000587339 GPR98Q8WXG9 6306 aa4.31□□□□□ -1.72
TRIM47-204ENST00000587339 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.07□□□□□ -1.76
TRIM47-204ENST00000587339 KRTAP9-9Q9BYP9 154 aa4.01□□□□□ -1.77
TRIM47-204ENST00000587339 KRTAP21-2Q3LI59 83 aa3.88□□□□□ -1.79
TRIM47-204ENST00000587339 MUC5BQ9HC84 5762 aaPredicted RBP3.85□□□□□ -1.79
TRIM47-204ENST00000587339 KRTAP5-11Q6L8G4 156 aa3.83□□□□□ -1.8
TRIM47-204ENST00000587339 KRTAP4-12Q9BQ66 201 aa3.62□□□□□ -1.83
TRIM47-204ENST00000587339 LCE1FQ5T754 118 aa3.49□□□□□ -1.85
TRIM47-204ENST00000587339 KRTAP4-4Q9BYR3 166 aa3.47□□□□□ -1.85
TRIM47-204ENST00000587339 AHNAKQ09666 5890 aaKnown RBP3.42□□□□□ -1.86
TRIM47-204ENST00000587339 PHGR1C9JFL3 82 aa3.3□□□□□ -1.88
TRIM47-204ENST00000587339 MUC19Q7Z5P9 8384 aa3.05□□□□□ -1.92
TRIM47-204ENST00000587339 KRTAP21-1Q3LI58 79 aa2.95□□□□□ -1.94
TRIM47-204ENST00000587339 MUC16Q8WXI7 14507 aa2.11□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 279.4 ms