RNA–Protein interactions for RNA: ENST00000582252.1

CCDC47-204, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2 BASIC

Gene CCDC47, Length 1,719 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-204ENST00000582252 SPRR2FQ96RM1 72 aa8.01□□□□□ -1.13
CCDC47-204ENST00000582252 KRTAP5-9P26371 169 aa8□□□□□ -1.13
CCDC47-204ENST00000582252 MT1LQ93083 61 aa7.98□□□□□ -1.13
CCDC47-204ENST00000582252 KRTAP6-3Q3LI67 103 aa7.97□□□□□ -1.13
CCDC47-204ENST00000582252 MUC12Q9UKN1 5478 aa7.96□□□□□ -1.14
CCDC47-204ENST00000582252 KRTAP9-7A8MTY7 169 aa7.83□□□□□ -1.16
CCDC47-204ENST00000582252 A0A0A0MQY5 61 aa7.8□□□□□ -1.16
CCDC47-204ENST00000582252 MDN1Q9NU22 5596 aa7.79□□□□□ -1.16
CCDC47-204ENST00000582252 KRTAP19-3Q7Z4W3 81 aa7.75□□□□□ -1.17
CCDC47-204ENST00000582252 KRTAP4-7Q9BYR0 210 aa7.75□□□□□ -1.17
CCDC47-204ENST00000582252 MT1GP13640 62 aa7.68□□□□□ -1.18
CCDC47-204ENST00000582252 LCE1AQ5T7P2 110 aa7.68□□□□□ -1.18
CCDC47-204ENST00000582252 SPRR2EP22531 72 aa7.66□□□□□ -1.18
CCDC47-204ENST00000582252 SPRR2BP35325 72 aa7.66□□□□□ -1.18
CCDC47-204ENST00000582252 SPRR2AP35326 72 aa7.66□□□□□ -1.18
CCDC47-204ENST00000582252 KRTAP9-6A8MVA2 160 aa7.65□□□□□ -1.18
CCDC47-204ENST00000582252 LCE5AQ5TCM9 118 aa7.63□□□□□ -1.19
CCDC47-204ENST00000582252 MT1MQ8N339 61 aa7.59□□□□□ -1.19
CCDC47-204ENST00000582252 NEBP20929 6669 aa7.57□□□□□ -1.2
CCDC47-204ENST00000582252 KRTAP4-3Q9BYR4 195 aa7.41□□□□□ -1.22
CCDC47-204ENST00000582252 SPRR2DP22532 72 aa7.38□□□□□ -1.23
CCDC47-204ENST00000582252 DSTQ03001 7570 aaKnown RBP7.33□□□□□ -1.24
CCDC47-204ENST00000582252 KRTAP2-3P0C7H8 128 aa7.31□□□□□ -1.24
CCDC47-204ENST00000582252 KRTAP2-4Q9BYR9 128 aa7.31□□□□□ -1.24
CCDC47-204ENST00000582252 KRTAP2-1Q9BYU5 128 aa7.31□□□□□ -1.24
CCDC47-204ENST00000582252 LOC100996750A0A140TA64 210 aa7.26□□□□□ -1.25
CCDC47-204ENST00000582252 INE1O15225 51 aa7.21□□□□□ -1.26
CCDC47-204ENST00000582252 LCE3BQ5TA77 95 aa7.11□□□□□ -1.27
CCDC47-204ENST00000582252 KRTAP20-1Q3LI63 56 aa6.94□□□□□ -1.3
CCDC47-204ENST00000582252 KRTAP2-2Q9BYT5 123 aa6.85□□□□□ -1.31
CCDC47-204ENST00000582252 KRTAP5-5Q701N2 237 aaPredicted RBP6.82□□□□□ -1.32
CCDC47-204ENST00000582252 MT1AP04731 61 aa6.8□□□□□ -1.32
CCDC47-204ENST00000582252 KRTAP6-1Q3LI64 71 aa6.7□□□□□ -1.34
CCDC47-204ENST00000582252 KRTAP5-4Q6L8H1 288 aa6.63□□□□□ -1.35
CCDC47-204ENST00000582252 LCE4AQ5TA78 99 aa6.58□□□□□ -1.36
CCDC47-204ENST00000582252 SYNE1Q8NF91 8797 aaKnown RBP6.57□□□□□ -1.36
CCDC47-204ENST00000582252 KRTAP12-4P60329 112 aa6.42□□□□□ -1.38
CCDC47-204ENST00000582252 KRTAP9-4Q9BYQ2 154 aa6.42□□□□□ -1.38
CCDC47-204ENST00000582252 MT4P47944 62 aa6.39□□□□□ -1.39
CCDC47-204ENST00000582252 KRTAP4-9Q9BYQ8 210 aa6.36□□□□□ -1.39
CCDC47-204ENST00000582252 HMCN1Q96RW7 5635 aa6.33□□□□□ -1.4
CCDC47-204ENST00000582252 LCE1DQ5T752 114 aa6.33□□□□□ -1.4
CCDC47-204ENST00000582252 KRTAP4-6Q9BYQ5 205 aa6.3□□□□□ -1.4
CCDC47-204ENST00000582252 LCE3DQ9BYE3 92 aa6.21□□□□□ -1.42
CCDC47-204ENST00000582252 KRTAP20-2Q3LI61 65 aa6.2□□□□□ -1.42
CCDC47-204ENST00000582252 MT3P25713 68 aa6.16□□□□□ -1.42
CCDC47-204ENST00000582252 KRTAP6-2Q3LI66 62 aa6.11□□□□□ -1.43
CCDC47-204ENST00000582252 LCE3EQ5T5B0 92 aa6.09□□□□□ -1.43
CCDC47-204ENST00000582252 KRTAP5-3Q6L8H2 238 aa5.98□□□□□ -1.45
CCDC47-204ENST00000582252 KRTAP5-2Q701N4 177 aa5.98□□□□□ -1.45
CCDC47-204ENST00000582252 AHNAK2Q8IVF2 5795 aa5.76□□□□□ -1.49
CCDC47-204ENST00000582252 OBSCNQ5VST9 7968 aa5.67□□□□□ -1.5
CCDC47-204ENST00000582252 PRM1P04553 51 aa5.48□□□□□ -1.53
CCDC47-204ENST00000582252 KRTAP4-11Q9BYQ6 195 aa5.44□□□□□ -1.54
CCDC47-204ENST00000582252 GPR98Q8WXG9 6306 aa5.42□□□□□ -1.54
CCDC47-204ENST00000582252 KRTAP5-10Q6L8G5 202 aa5.39□□□□□ -1.55
CCDC47-204ENST00000582252 LCE1EQ5T753 118 aa5.31□□□□□ -1.56
CCDC47-204ENST00000582252 KRTAP5-8O75690 187 aa5.22□□□□□ -1.57
CCDC47-204ENST00000582252 KRTAP5-1Q6L8H4 278 aa5.19□□□□□ -1.58
CCDC47-204ENST00000582252 MUC5ACP98088 5654 aa5.15□□□□□ -1.58
CCDC47-204ENST00000582252 KRTAP5-7Q6L8G8 165 aa5.04□□□□□ -1.6
CCDC47-204ENST00000582252 LCE1BQ5T7P3 118 aa4.94□□□□□ -1.62
CCDC47-204ENST00000582252 LCE1CQ5T751 118 aa4.94□□□□□ -1.62
CCDC47-204ENST00000582252 KRTAP4-2Q9BYR5 136 aa4.93□□□□□ -1.62
CCDC47-204ENST00000582252 KRTAP9-9Q9BYP9 154 aa4.79□□□□□ -1.64
CCDC47-204ENST00000582252 MUC5BQ9HC84 5762 aaPredicted RBP4.63□□□□□ -1.67
CCDC47-204ENST00000582252 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.6□□□□□ -1.67
CCDC47-204ENST00000582252 AHNAKQ09666 5890 aaKnown RBP4.48□□□□□ -1.69
CCDC47-204ENST00000582252 KRTAP4-12Q9BQ66 201 aa4.41□□□□□ -1.7
CCDC47-204ENST00000582252 KRTAP5-11Q6L8G4 156 aa4.39□□□□□ -1.71
CCDC47-204ENST00000582252 KRTAP21-2Q3LI59 83 aa4.37□□□□□ -1.71
CCDC47-204ENST00000582252 LCE1FQ5T754 118 aa4.04□□□□□ -1.76
CCDC47-204ENST00000582252 KRTAP4-4Q9BYR3 166 aa3.85□□□□□ -1.79
CCDC47-204ENST00000582252 PHGR1C9JFL3 82 aa3.76□□□□□ -1.81
CCDC47-204ENST00000582252 MUC19Q7Z5P9 8384 aa3.43□□□□□ -1.86
CCDC47-204ENST00000582252 KRTAP21-1Q3LI58 79 aa3.41□□□□□ -1.86
CCDC47-204ENST00000582252 MUC16Q8WXI7 14507 aa2.42□□□□□ -2.02
Retrieved 77 of 20,778 RNA–protein pairs in 138.9 ms