RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 MDN1Q9NU22 5596 aa6.32□□□□□ -1.4
NUP88-210ENST00000574867 MT1EP04732 61 aa6.32□□□□□ -1.4
NUP88-210ENST00000574867 KRTAP23-1A1A580 65 aa6.31□□□□□ -1.4
NUP88-210ENST00000574867 LCE1AQ5T7P2 110 aa6.31□□□□□ -1.4
NUP88-210ENST00000574867 KRTAP15-1Q3LI76 137 aa6.24□□□□□ -1.41
NUP88-210ENST00000574867 KRTAP12-3P60328 96 aa6.21□□□□□ -1.42
NUP88-210ENST00000574867 PP632Q6XCG6 107 aa6.2□□□□□ -1.42
NUP88-210ENST00000574867 NDUFAF8A1L188 74 aa6.19□□□□□ -1.42
NUP88-210ENST00000574867 KRTAP19-3Q7Z4W3 81 aa6.18□□□□□ -1.42
NUP88-210ENST00000574867 LCE5AQ5TCM9 118 aa6.13□□□□□ -1.43
NUP88-210ENST00000574867 SPRR2DP22532 72 aa6.12□□□□□ -1.43
NUP88-210ENST00000574867 MT1LQ93083 61 aa6.11□□□□□ -1.43
NUP88-210ENST00000574867 MT1GP13640 62 aa6.08□□□□□ -1.44
NUP88-210ENST00000574867 KRTAP20-1Q3LI63 56 aa6.03□□□□□ -1.44
NUP88-210ENST00000574867 KRTAP2-3P0C7H8 128 aa5.99□□□□□ -1.45
NUP88-210ENST00000574867 KRTAP2-4Q9BYR9 128 aa5.99□□□□□ -1.45
NUP88-210ENST00000574867 MT1MQ8N339 61 aa5.98□□□□□ -1.45
NUP88-210ENST00000574867 KRTAP19-4Q3LI73 84 aa5.93□□□□□ -1.46
NUP88-210ENST00000574867 LCE3BQ5TA77 95 aa5.91□□□□□ -1.46
NUP88-210ENST00000574867 KRTAP2-2Q9BYT5 123 aa5.83□□□□□ -1.48
NUP88-210ENST00000574867 KRTAP2-1Q9BYU5 128 aa5.83□□□□□ -1.48
NUP88-210ENST00000574867 KRTAP4-7Q9BYR0 210 aa5.79□□□□□ -1.48
NUP88-210ENST00000574867 KRTAP4-3Q9BYR4 195 aa5.78□□□□□ -1.48
NUP88-210ENST00000574867 LCE3CQ5T5A8 94 aa5.76□□□□□ -1.49
NUP88-210ENST00000574867 DSTQ03001 7570 aaKnown RBP5.71□□□□□ -1.5
NUP88-210ENST00000574867 LUZP6Q538Z0 58 aa5.69□□□□□ -1.5
NUP88-210ENST00000574867 A0A0A0MQY5 61 aa5.58□□□□□ -1.52
NUP88-210ENST00000574867 LOC100996750A0A140TA64 210 aa5.47□□□□□ -1.53
NUP88-210ENST00000574867 LCE4AQ5TA78 99 aa5.46□□□□□ -1.54
NUP88-210ENST00000574867 KRTAP5-5Q701N2 237 aaPredicted RBP5.44□□□□□ -1.54
NUP88-210ENST00000574867 KRTAP5-4Q6L8H1 288 aa5.43□□□□□ -1.54
NUP88-210ENST00000574867 SPRR5A0A1B0GTR4 108 aa5.41□□□□□ -1.54
NUP88-210ENST00000574867 KRTAP9-6A8MVA2 160 aa5.39□□□□□ -1.55
NUP88-210ENST00000574867 KRTAP4-9Q9BYQ8 210 aa5.34□□□□□ -1.55
NUP88-210ENST00000574867 LCE1DQ5T752 114 aa5.3□□□□□ -1.56
NUP88-210ENST00000574867 MT4P47944 62 aa5.3□□□□□ -1.56
NUP88-210ENST00000574867 MT1AP04731 61 aa5.22□□□□□ -1.57
NUP88-210ENST00000574867 KRTAP12-4P60329 112 aa5.19□□□□□ -1.58
NUP88-210ENST00000574867 KRTAP4-6Q9BYQ5 205 aa5.19□□□□□ -1.58
NUP88-210ENST00000574867 HMCN1Q96RW7 5635 aa5.18□□□□□ -1.58
NUP88-210ENST00000574867 KRTAP6-1Q3LI64 71 aa5.13□□□□□ -1.59
NUP88-210ENST00000574867 KRTAP20-2Q3LI61 65 aa5.09□□□□□ -1.59
NUP88-210ENST00000574867 SYNE1Q8NF91 8797 aaKnown RBP5.06□□□□□ -1.6
NUP88-210ENST00000574867 INE1O15225 51 aa5.01□□□□□ -1.61
NUP88-210ENST00000574867 KRTAP9-4Q9BYQ2 154 aa4.98□□□□□ -1.61
NUP88-210ENST00000574867 KRTAP5-3Q6L8H2 238 aa4.92□□□□□ -1.62
NUP88-210ENST00000574867 KRTAP5-2Q701N4 177 aa4.85□□□□□ -1.63
NUP88-210ENST00000574867 KRTAP6-2Q3LI66 62 aa4.82□□□□□ -1.64
NUP88-210ENST00000574867 AHNAK2Q8IVF2 5795 aa4.8□□□□□ -1.64
NUP88-210ENST00000574867 MT3P25713 68 aa4.76□□□□□ -1.65
NUP88-210ENST00000574867 GPR98Q8WXG9 6306 aa4.73□□□□□ -1.65
NUP88-210ENST00000574867 KRTAP5-10Q6L8G5 202 aa4.69□□□□□ -1.66
NUP88-210ENST00000574867 KRTAP4-11Q9BYQ6 195 aa4.53□□□□□ -1.68
NUP88-210ENST00000574867 KRTAP5-7Q6L8G8 165 aa4.45□□□□□ -1.7
NUP88-210ENST00000574867 KRTAP5-8O75690 187 aa4.36□□□□□ -1.71
NUP88-210ENST00000574867 OBSCNQ5VST9 7968 aa4.31□□□□□ -1.72
NUP88-210ENST00000574867 LCE1EQ5T753 118 aa4.26□□□□□ -1.73
NUP88-210ENST00000574867 LCE3DQ9BYE3 92 aa4.25□□□□□ -1.73
NUP88-210ENST00000574867 KRTAP5-1Q6L8H4 278 aa4.24□□□□□ -1.73
NUP88-210ENST00000574867 MUC5ACP98088 5654 aa4.08□□□□□ -1.76
NUP88-210ENST00000574867 LCE3EQ5T5B0 92 aa4.07□□□□□ -1.76
NUP88-210ENST00000574867 KRTAP9-9Q9BYP9 154 aa4.06□□□□□ -1.76
NUP88-210ENST00000574867 KRTAP4-2Q9BYR5 136 aa3.96□□□□□ -1.78
NUP88-210ENST00000574867 LCE1CQ5T751 118 aa3.95□□□□□ -1.78
NUP88-210ENST00000574867 LCE1BQ5T7P3 118 aa3.95□□□□□ -1.78
NUP88-210ENST00000574867 MUC5BQ9HC84 5762 aaPredicted RBP3.89□□□□□ -1.79
NUP88-210ENST00000574867 AHNAKQ09666 5890 aaKnown RBP3.81□□□□□ -1.8
NUP88-210ENST00000574867 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.66□□□□□ -1.82
NUP88-210ENST00000574867 KRTAP5-11Q6L8G4 156 aa3.55□□□□□ -1.84
NUP88-210ENST00000574867 KRTAP4-12Q9BQ66 201 aa3.55□□□□□ -1.84
NUP88-210ENST00000574867 PRM1P04553 51 aa3.52□□□□□ -1.85
NUP88-210ENST00000574867 KRTAP21-2Q3LI59 83 aa3.38□□□□□ -1.87
NUP88-210ENST00000574867 LCE1FQ5T754 118 aa3.34□□□□□ -1.87
NUP88-210ENST00000574867 PHGR1C9JFL3 82 aa3.04□□□□□ -1.92
NUP88-210ENST00000574867 KRTAP4-4Q9BYR3 166 aa2.99□□□□□ -1.93
NUP88-210ENST00000574867 MUC19Q7Z5P9 8384 aa2.63□□□□□ -1.99
NUP88-210ENST00000574867 KRTAP21-1Q3LI58 79 aa2.25□□□□□ -2.05
NUP88-210ENST00000574867 MUC16Q8WXI7 14507 aa1.88□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 102.3 ms