RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 MT1LQ93083 61 aa8.58□□□□□ -1.04
ATPAF1-213ENST00000574428 SPRR2EP22531 72 aa8.56□□□□□ -1.04
ATPAF1-213ENST00000574428 SPRR2BP35325 72 aa8.56□□□□□ -1.04
ATPAF1-213ENST00000574428 SPRR2AP35326 72 aa8.56□□□□□ -1.04
ATPAF1-213ENST00000574428 LCE1AQ5T7P2 110 aa8.56□□□□□ -1.04
ATPAF1-213ENST00000574428 KRTAP19-3Q7Z4W3 81 aa8.53□□□□□ -1.04
ATPAF1-213ENST00000574428 LCE5AQ5TCM9 118 aa8.43□□□□□ -1.06
ATPAF1-213ENST00000574428 MT1GP13640 62 aa8.4□□□□□ -1.06
ATPAF1-213ENST00000574428 SPRR5A0A1B0GTR4 108 aa8.4□□□□□ -1.07
ATPAF1-213ENST00000574428 NEBP20929 6669 aa8.38□□□□□ -1.07
ATPAF1-213ENST00000574428 MT1MQ8N339 61 aa8.33□□□□□ -1.08
ATPAF1-213ENST00000574428 KRTAP4-7Q9BYR0 210 aa8.3□□□□□ -1.08
ATPAF1-213ENST00000574428 LCE3CQ5T5A8 94 aa8.27□□□□□ -1.09
ATPAF1-213ENST00000574428 KRTAP19-4Q3LI73 84 aa8.25□□□□□ -1.09
ATPAF1-213ENST00000574428 SPRR2DP22532 72 aa8.25□□□□□ -1.09
ATPAF1-213ENST00000574428 NDUFAF8A1L188 74 aa8.2□□□□□ -1.1
ATPAF1-213ENST00000574428 KRTAP4-3Q9BYR4 195 aa8.18□□□□□ -1.1
ATPAF1-213ENST00000574428 LUZP6Q538Z0 58 aa8.17□□□□□ -1.1
ATPAF1-213ENST00000574428 DSTQ03001 7570 aaKnown RBP7.99□□□□□ -1.13
ATPAF1-213ENST00000574428 LCE3BQ5TA77 95 aa7.94□□□□□ -1.14
ATPAF1-213ENST00000574428 KRTAP2-3P0C7H8 128 aa7.85□□□□□ -1.15
ATPAF1-213ENST00000574428 KRTAP2-4Q9BYR9 128 aa7.85□□□□□ -1.15
ATPAF1-213ENST00000574428 KRTAP9-6A8MVA2 160 aa7.84□□□□□ -1.15
ATPAF1-213ENST00000574428 KRTAP20-1Q3LI63 56 aa7.84□□□□□ -1.15
ATPAF1-213ENST00000574428 LOC100996750A0A140TA64 210 aa7.82□□□□□ -1.16
ATPAF1-213ENST00000574428 KRTAP2-2Q9BYT5 123 aa7.66□□□□□ -1.18
ATPAF1-213ENST00000574428 KRTAP2-1Q9BYU5 128 aa7.66□□□□□ -1.18
ATPAF1-213ENST00000574428 H3BS24 57 aa7.54□□□□□ -1.2
ATPAF1-213ENST00000574428 KRTAP5-5Q701N2 237 aaPredicted RBP7.54□□□□□ -1.2
ATPAF1-213ENST00000574428 KRTAP5-4Q6L8H1 288 aa7.35□□□□□ -1.23
ATPAF1-213ENST00000574428 MT1AP04731 61 aa7.28□□□□□ -1.24
ATPAF1-213ENST00000574428 LCE4AQ5TA78 99 aa7.28□□□□□ -1.24
ATPAF1-213ENST00000574428 KRTAP6-1Q3LI64 71 aa7.25□□□□□ -1.25
ATPAF1-213ENST00000574428 KRTAP4-9Q9BYQ8 210 aa7.2□□□□□ -1.26
ATPAF1-213ENST00000574428 MT4P47944 62 aa7.19□□□□□ -1.26
ATPAF1-213ENST00000574428 A0A0A0MQY5 61 aa7.18□□□□□ -1.26
ATPAF1-213ENST00000574428 LCE1DQ5T752 114 aa7.11□□□□□ -1.27
ATPAF1-213ENST00000574428 KRTAP4-6Q9BYQ5 205 aa7.08□□□□□ -1.28
ATPAF1-213ENST00000574428 SYNE1Q8NF91 8797 aaKnown RBP7.08□□□□□ -1.28
ATPAF1-213ENST00000574428 KRTAP12-4P60329 112 aa7.08□□□□□ -1.28
ATPAF1-213ENST00000574428 HMCN1Q96RW7 5635 aa6.99□□□□□ -1.29
ATPAF1-213ENST00000574428 KRTAP9-4Q9BYQ2 154 aa6.95□□□□□ -1.3
ATPAF1-213ENST00000574428 KRTAP20-2Q3LI61 65 aa6.9□□□□□ -1.3
ATPAF1-213ENST00000574428 KRTAP6-2Q3LI66 62 aa6.74□□□□□ -1.33
ATPAF1-213ENST00000574428 INE1O15225 51 aa6.69□□□□□ -1.34
ATPAF1-213ENST00000574428 KRTAP5-3Q6L8H2 238 aa6.66□□□□□ -1.34
ATPAF1-213ENST00000574428 MT3P25713 68 aa6.61□□□□□ -1.35
ATPAF1-213ENST00000574428 KRTAP5-2Q701N4 177 aa6.61□□□□□ -1.35
ATPAF1-213ENST00000574428 AHNAK2Q8IVF2 5795 aa6.35□□□□□ -1.39
ATPAF1-213ENST00000574428 GPR98Q8WXG9 6306 aa6.17□□□□□ -1.42
ATPAF1-213ENST00000574428 LCE3DQ9BYE3 92 aa6.15□□□□□ -1.43
ATPAF1-213ENST00000574428 OBSCNQ5VST9 7968 aa6.11□□□□□ -1.43
ATPAF1-213ENST00000574428 KRTAP5-10Q6L8G5 202 aa6.09□□□□□ -1.43
ATPAF1-213ENST00000574428 KRTAP4-11Q9BYQ6 195 aa6.07□□□□□ -1.44
ATPAF1-213ENST00000574428 LCE3EQ5T5B0 92 aa6□□□□□ -1.45
ATPAF1-213ENST00000574428 KRTAP5-8O75690 187 aa5.85□□□□□ -1.47
ATPAF1-213ENST00000574428 LCE1EQ5T753 118 aa5.81□□□□□ -1.48
ATPAF1-213ENST00000574428 KRTAP5-1Q6L8H4 278 aa5.78□□□□□ -1.48
ATPAF1-213ENST00000574428 KRTAP5-7Q6L8G8 165 aa5.69□□□□□ -1.5
ATPAF1-213ENST00000574428 MUC5ACP98088 5654 aa5.55□□□□□ -1.52
ATPAF1-213ENST00000574428 LCE1BQ5T7P3 118 aa5.5□□□□□ -1.53
ATPAF1-213ENST00000574428 KRTAP4-2Q9BYR5 136 aa5.47□□□□□ -1.53
ATPAF1-213ENST00000574428 LCE1CQ5T751 118 aa5.42□□□□□ -1.54
ATPAF1-213ENST00000574428 PRM1P04553 51 aa5.37□□□□□ -1.55
ATPAF1-213ENST00000574428 KRTAP9-9Q9BYP9 154 aa5.34□□□□□ -1.55
ATPAF1-213ENST00000574428 MUC5BQ9HC84 5762 aaPredicted RBP5.1□□□□□ -1.59
ATPAF1-213ENST00000574428 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.03□□□□□ -1.6
ATPAF1-213ENST00000574428 AHNAKQ09666 5890 aaKnown RBP4.92□□□□□ -1.62
ATPAF1-213ENST00000574428 KRTAP5-11Q6L8G4 156 aa4.81□□□□□ -1.64
ATPAF1-213ENST00000574428 KRTAP21-2Q3LI59 83 aa4.75□□□□□ -1.65
ATPAF1-213ENST00000574428 KRTAP4-12Q9BQ66 201 aa4.67□□□□□ -1.66
ATPAF1-213ENST00000574428 LCE1FQ5T754 118 aa4.41□□□□□ -1.7
ATPAF1-213ENST00000574428 KRTAP4-4Q9BYR3 166 aa4.28□□□□□ -1.72
ATPAF1-213ENST00000574428 PHGR1C9JFL3 82 aa4.14□□□□□ -1.75
ATPAF1-213ENST00000574428 MUC19Q7Z5P9 8384 aa3.69□□□□□ -1.82
ATPAF1-213ENST00000574428 KRTAP21-1Q3LI58 79 aa3.3□□□□□ -1.88
ATPAF1-213ENST00000574428 MUC16Q8WXI7 14507 aa2.6□□□□□ -1.99
Retrieved 77 of 20,778 RNA–protein pairs in 123.7 ms