RNA–Protein interactions for RNA: ENST00000569225.5

CHD9-219, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 2

Gene CHD9, Length 1,862 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-219ENST00000569225 KRTAP6-3Q3LI67 103 aa3.67□□□□□ -1.82
CHD9-219ENST00000569225 KRTAP10-7P60409 375 aaPredicted RBP3.63□□□□□ -1.83
CHD9-219ENST00000569225 KRTAP10-12P60413 245 aa3.63□□□□□ -1.83
CHD9-219ENST00000569225 KRTAP19-4Q3LI73 84 aa3.6□□□□□ -1.83
CHD9-219ENST00000569225 KRTAP8-1Q8IUC2 63 aa3.6□□□□□ -1.83
CHD9-219ENST00000569225 LCE4AQ5TA78 99 aa3.6□□□□□ -1.83
CHD9-219ENST00000569225 KRTAP5-9P26371 169 aa3.58□□□□□ -1.84
CHD9-219ENST00000569225 KRTAP15-1Q3LI76 137 aa3.57□□□□□ -1.84
CHD9-219ENST00000569225 C10orf95Q9H7T3 257 aa3.55□□□□□ -1.84
CHD9-219ENST00000569225 KMT2DO14686 5537 aa3.54□□□□□ -1.84
CHD9-219ENST00000569225 TNP1P09430 55 aa3.54□□□□□ -1.84
CHD9-219ENST00000569225 SPRR2FQ96RM1 72 aa3.53□□□□□ -1.84
CHD9-219ENST00000569225 NEBP20929 6669 aa3.49□□□□□ -1.85
CHD9-219ENST00000569225 MUC12Q9UKN1 5478 aa3.46□□□□□ -1.85
CHD9-219ENST00000569225 MDN1Q9NU22 5596 aa3.45□□□□□ -1.86
CHD9-219ENST00000569225 SPRR2EP22531 72 aa3.43□□□□□ -1.86
CHD9-219ENST00000569225 SPRR2BP35325 72 aa3.43□□□□□ -1.86
CHD9-219ENST00000569225 SPRR2AP35326 72 aa3.43□□□□□ -1.86
CHD9-219ENST00000569225 HMCN1Q96RW7 5635 aa3.42□□□□□ -1.86
CHD9-219ENST00000569225 LCE3AQ5TA76 89 aa3.41□□□□□ -1.86
CHD9-219ENST00000569225 LCE1AQ5T7P2 110 aa3.4□□□□□ -1.87
CHD9-219ENST00000569225 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.4□□□□□ -1.87
CHD9-219ENST00000569225 KRTAP19-7Q3SYF9 63 aa3.39□□□□□ -1.87
CHD9-219ENST00000569225 KRTAP19-5Q3LI72 72 aa3.38□□□□□ -1.87
CHD9-219ENST00000569225 MT1EP04732 61 aa3.37□□□□□ -1.87
CHD9-219ENST00000569225 SPRR2DP22532 72 aa3.32□□□□□ -1.88
CHD9-219ENST00000569225 KRTAP12-3P60328 96 aa3.3□□□□□ -1.88
CHD9-219ENST00000569225 KRTAP20-1Q3LI63 56 aa3.3□□□□□ -1.88
CHD9-219ENST00000569225 KRTAP19-3Q7Z4W3 81 aa3.3□□□□□ -1.88
CHD9-219ENST00000569225 PP632Q6XCG6 107 aa3.28□□□□□ -1.88
CHD9-219ENST00000569225 KRTAP2-3P0C7H8 128 aa3.27□□□□□ -1.89
CHD9-219ENST00000569225 KRTAP2-4Q9BYR9 128 aa3.27□□□□□ -1.89
CHD9-219ENST00000569225 MT1GP13640 62 aa3.26□□□□□ -1.89
CHD9-219ENST00000569225 MT1LQ93083 61 aa3.26□□□□□ -1.89
CHD9-219ENST00000569225 INE1O15225 51 aa3.2□□□□□ -1.9
CHD9-219ENST00000569225 MT1MQ8N339 61 aa3.19□□□□□ -1.9
CHD9-219ENST00000569225 KRTAP2-2Q9BYT5 123 aa3.18□□□□□ -1.9
CHD9-219ENST00000569225 KRTAP2-1Q9BYU5 128 aa3.18□□□□□ -1.9
CHD9-219ENST00000569225 DSTQ03001 7570 aaKnown RBP3.09□□□□□ -1.91
CHD9-219ENST00000569225 KRTAP4-3Q9BYR4 195 aa3.08□□□□□ -1.92
CHD9-219ENST00000569225 LCE3CQ5T5A8 94 aa3.06□□□□□ -1.92
CHD9-219ENST00000569225 KRTAP5-4Q6L8H1 288 aa2.91□□□□□ -1.94
CHD9-219ENST00000569225 KRTAP5-5Q701N2 237 aaPredicted RBP2.9□□□□□ -1.95
CHD9-219ENST00000569225 MT4P47944 62 aa2.87□□□□□ -1.95
CHD9-219ENST00000569225 KRTAP5-11Q6L8G4 156 aa2.85□□□□□ -1.95
CHD9-219ENST00000569225 KRTAP9-6A8MVA2 160 aa2.84□□□□□ -1.96
CHD9-219ENST00000569225 KRTAP12-4P60329 112 aa2.82□□□□□ -1.96
CHD9-219ENST00000569225 KRTAP5-1Q6L8H4 278 aa2.79□□□□□ -1.96
CHD9-219ENST00000569225 MT1AP04731 61 aa2.78□□□□□ -1.96
CHD9-219ENST00000569225 SPRR5A0A1B0GTR4 108 aa2.77□□□□□ -1.97
CHD9-219ENST00000569225 KRTAP4-4Q9BYR3 166 aa2.77□□□□□ -1.97
CHD9-219ENST00000569225 KRTAP20-2Q3LI61 65 aa2.74□□□□□ -1.97
CHD9-219ENST00000569225 KRTAP6-1Q3LI64 71 aa2.73□□□□□ -1.97
CHD9-219ENST00000569225 SYNE1Q8NF91 8797 aaKnown RBP2.72□□□□□ -1.97
CHD9-219ENST00000569225 GPR98Q8WXG9 6306 aa2.7□□□□□ -1.98
CHD9-219ENST00000569225 AHNAK2Q8IVF2 5795 aa2.65□□□□□ -1.99
CHD9-219ENST00000569225 KRTAP6-2Q3LI66 62 aa2.58□□□□□ -2
CHD9-219ENST00000569225 KRTAP5-2Q701N4 177 aa2.58□□□□□ -2
CHD9-219ENST00000569225 MT3P25713 68 aa2.56□□□□□ -2
CHD9-219ENST00000569225 KRTAP5-10Q6L8G5 202 aa2.55□□□□□ -2
CHD9-219ENST00000569225 KRTAP5-8O75690 187 aa2.48□□□□□ -2.01
CHD9-219ENST00000569225 KRTAP5-7Q6L8G8 165 aa2.43□□□□□ -2.02
CHD9-219ENST00000569225 LCE1FQ5T754 118 aa2.36□□□□□ -2.03
CHD9-219ENST00000569225 LCE1EQ5T753 118 aa2.33□□□□□ -2.04
CHD9-219ENST00000569225 OBSCNQ5VST9 7968 aa2.33□□□□□ -2.04
CHD9-219ENST00000569225 LCE3DQ9BYE3 92 aa2.26□□□□□ -2.05
CHD9-219ENST00000569225 MUC5ACP98088 5654 aa2.26□□□□□ -2.05
CHD9-219ENST00000569225 MUC5BQ9HC84 5762 aaPredicted RBP2.18□□□□□ -2.06
CHD9-219ENST00000569225 AHNAKQ09666 5890 aaKnown RBP2.17□□□□□ -2.06
CHD9-219ENST00000569225 LCE3EQ5T5B0 92 aa2.16□□□□□ -2.06
CHD9-219ENST00000569225 LCE1BQ5T7P3 118 aa2.13□□□□□ -2.07
CHD9-219ENST00000569225 LCE1CQ5T751 118 aa2.11□□□□□ -2.07
CHD9-219ENST00000569225 KRTAP21-2Q3LI59 83 aa1.8□□□□□ -2.12
CHD9-219ENST00000569225 PRM1P04553 51 aa1.73□□□□□ -2.13
CHD9-219ENST00000569225 PHGR1C9JFL3 82 aa1.63□□□□□ -2.15
CHD9-219ENST00000569225 MUC19Q7Z5P9 8384 aa1.43□□□□□ -2.18
CHD9-219ENST00000569225 KRTAP21-1Q3LI58 79 aa1.26□□□□□ -2.21
CHD9-219ENST00000569225 MUC16Q8WXI7 14507 aa1.02□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 69.5 ms