RNA–Protein interactions for RNA: ENST00000561076.1

RTF1-207, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 314 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-207ENST00000561076 TTTY10Q9BZA0 68 aa0.54□□□□□ -2.32
RTF1-207ENST00000561076 S4R3F8 94 aa0.54□□□□□ -2.32
RTF1-207ENST00000561076 LRP1Q07954 4544 aaKnown RBP0.54□□□□□ -2.32
RTF1-207ENST00000561076 USH2AO75445 5202 aa0.54□□□□□ -2.32
RTF1-207ENST00000561076 FCGBPQ9Y6R7 5405 aaPredicted RBP0.54□□□□□ -2.32
RTF1-207ENST00000561076 K7EIM0 57 aa0.53□□□□□ -2.32
RTF1-207ENST00000561076 DSTQ03001 7570 aaKnown RBP0.53□□□□□ -2.32
RTF1-207ENST00000561076 MUC5BQ9HC84 5762 aaPredicted RBP0.53□□□□□ -2.32
RTF1-207ENST00000561076 NDUFA1O15239 70 aa0.52□□□□□ -2.33
RTF1-207ENST00000561076 KRTAP5-7Q6L8G8 165 aa0.52□□□□□ -2.33
RTF1-207ENST00000561076 ARHGAP5-AS1Q96IT6 56 aa0.52□□□□□ -2.33
RTF1-207ENST00000561076 TNXBP22105 4242 aa0.52□□□□□ -2.33
RTF1-207ENST00000561076 A8MTW9 85 aa0.51□□□□□ -2.33
RTF1-207ENST00000561076 DEFB1P60022 68 aa0.51□□□□□ -2.33
RTF1-207ENST00000561076 KRTAP5-1Q6L8H4 278 aa0.51□□□□□ -2.33
RTF1-207ENST00000561076 LPAP08519 4548 aa0.51□□□□□ -2.33
RTF1-207ENST00000561076 MT1HP80294 61 aa0.5□□□□□ -2.33
RTF1-207ENST00000561076 MUC12Q9UKN1 5478 aa0.5□□□□□ -2.33
RTF1-207ENST00000561076 DNAH8Q96JB1 4490 aa0.49□□□□□ -2.33
RTF1-207ENST00000561076 M0QY20 66 aa0.49□□□□□ -2.33
RTF1-207ENST00000561076 KRTAP5-10Q6L8G5 202 aa0.49□□□□□ -2.33
RTF1-207ENST00000561076 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.49□□□□□ -2.33
RTF1-207ENST00000561076 KRTAP5-4Q6L8H1 288 aa0.49□□□□□ -2.33
RTF1-207ENST00000561076 KRTAP19-3Q7Z4W3 81 aa0.49□□□□□ -2.33
RTF1-207ENST00000561076 MDN1Q9NU22 5596 aa0.48□□□□□ -2.33
RTF1-207ENST00000561076 A0A096LNI7 61 aa0.48□□□□□ -2.33
RTF1-207ENST00000561076 CLPSL2Q6UWE3 100 aa0.48□□□□□ -2.33
RTF1-207ENST00000561076 IGLV5-48A0A075B6I7 105 aa0.47□□□□□ -2.33
RTF1-207ENST00000561076 C9orf92A6NGG3 77 aa0.47□□□□□ -2.33
RTF1-207ENST00000561076 KRTAP19-6Q3LI70 58 aa0.47□□□□□ -2.33
RTF1-207ENST00000561076 KRTAP4-1Q9BYQ7 146 aa0.47□□□□□ -2.33
RTF1-207ENST00000561076 MUC5ACP98088 5654 aa0.47□□□□□ -2.33
RTF1-207ENST00000561076 MUC17Q685J3 4493 aa0.46□□□□□ -2.34
RTF1-207ENST00000561076 OBSCNQ5VST9 7968 aa0.46□□□□□ -2.34
RTF1-207ENST00000561076 SPRR2EP22531 72 aa0.46□□□□□ -2.34
RTF1-207ENST00000561076 SPRR2DP22532 72 aa0.46□□□□□ -2.34
RTF1-207ENST00000561076 SPRR2BP35325 72 aa0.46□□□□□ -2.34
RTF1-207ENST00000561076 SPRR2AP35326 72 aa0.46□□□□□ -2.34
RTF1-207ENST00000561076 MMP24-AS1A0A0U1RRL7 71 aa0.45□□□□□ -2.34
RTF1-207ENST00000561076 RPS29P62273 56 aaKnown RBP0.45□□□□□ -2.34
RTF1-207ENST00000561076 KRTAP19-2Q3LHN2 52 aa0.45□□□□□ -2.34
RTF1-207ENST00000561076 KRTAP4-3Q9BYR4 195 aa0.45□□□□□ -2.34
RTF1-207ENST00000561076 MT2AP02795 61 aa0.44□□□□□ -2.34
RTF1-207ENST00000561076 KRTAP5-9P26371 169 aa0.44□□□□□ -2.34
RTF1-207ENST00000561076 M0QZ58 72 aa0.43□□□□□ -2.34
RTF1-207ENST00000561076 MT1FP04733 61 aa0.43□□□□□ -2.34
RTF1-207ENST00000561076 MT4P47944 62 aa0.43□□□□□ -2.34
RTF1-207ENST00000561076 SPRR2FQ96RM1 72 aa0.43□□□□□ -2.34
RTF1-207ENST00000561076 PRM1P04553 51 aa0.42□□□□□ -2.34
RTF1-207ENST00000561076 TNP1P09430 55 aa0.42□□□□□ -2.34
RTF1-207ENST00000561076 TOMM7Q9P0U1 55 aa0.42□□□□□ -2.34
RTF1-207ENST00000561076 KRTAP8-1Q8IUC2 63 aa0.41□□□□□ -2.34
RTF1-207ENST00000561076 FLGP20930 4061 aaPredicted RBP0.41□□□□□ -2.34
RTF1-207ENST00000561076 POLR2KP53803 58 aaKnown RBP0.4□□□□□ -2.35
RTF1-207ENST00000561076 MUC19Q7Z5P9 8384 aa0.39□□□□□ -2.35
RTF1-207ENST00000561076 RPL39LQ96EH5 51 aaKnown RBP0.39□□□□□ -2.35
RTF1-207ENST00000561076 KRTAP5-8O75690 187 aa0.38□□□□□ -2.35
RTF1-207ENST00000561076 RPL39P62891 51 aaKnown RBP0.38□□□□□ -2.35
RTF1-207ENST00000561076 KRTAP19-8Q3LI54 63 aa0.37□□□□□ -2.35
RTF1-207ENST00000561076 PHGR1C9JFL3 82 aa0.36□□□□□ -2.35
RTF1-207ENST00000561076 MT1BP07438 61 aa0.36□□□□□ -2.35
RTF1-207ENST00000561076 KRTAP21-2Q3LI59 83 aa0.36□□□□□ -2.35
RTF1-207ENST00000561076 SPRR2GQ9BYE4 73 aa0.35□□□□□ -2.35
RTF1-207ENST00000561076 SYNE1Q8NF91 8797 aaKnown RBP0.34□□□□□ -2.36
RTF1-207ENST00000561076 MT1GP13640 62 aa0.32□□□□□ -2.36
RTF1-207ENST00000561076 MT1XP80297 61 aa0.32□□□□□ -2.36
RTF1-207ENST00000561076 KRTAP21-1Q3LI58 79 aa0.32□□□□□ -2.36
RTF1-207ENST00000561076 KRTAP20-2Q3LI61 65 aa0.32□□□□□ -2.36
RTF1-207ENST00000561076 KRTAP5-2Q701N4 177 aa0.32□□□□□ -2.36
RTF1-207ENST00000561076 MT1EP04732 61 aa0.3□□□□□ -2.36
RTF1-207ENST00000561076 MUC16Q8WXI7 14507 aa0.3□□□□□ -2.36
RTF1-207ENST00000561076 KRTAP19-7Q3SYF9 63 aa0.29□□□□□ -2.36
RTF1-207ENST00000561076 MT1MQ8N339 61 aa0.29□□□□□ -2.36
RTF1-207ENST00000561076 KRTAP19-5Q3LI72 72 aa0.27□□□□□ -2.37
RTF1-207ENST00000561076 MT1LQ93083 61 aa0.27□□□□□ -2.37
RTF1-207ENST00000561076 MT1AP04731 61 aa0.25□□□□□ -2.37
RTF1-207ENST00000561076 KRTAP6-2Q3LI66 62 aa0.24□□□□□ -2.37
RTF1-207ENST00000561076 KRTAP6-1Q3LI64 71 aa0.23□□□□□ -2.37
Retrieved 78 of 20,778 RNA–protein pairs in 64.5 ms