RNA–Protein interactions for RNA: ENST00000558347.5

TPM1-212, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 1,525 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-212ENST00000558347 PLAC4Q8WY50 150 aa4.32□□□□□ -1.72
TPM1-212ENST00000558347 KRTAP5-9P26371 169 aa4.31□□□□□ -1.72
TPM1-212ENST00000558347 NDUFAF8A1L188 74 aa4.3□□□□□ -1.72
TPM1-212ENST00000558347 TNP1P09430 55 aa4.28□□□□□ -1.72
TPM1-212ENST00000558347 MT1XP80297 61 aa4.28□□□□□ -1.72
TPM1-212ENST00000558347 PRO2289Q9P1D8 64 aa4.24□□□□□ -1.73
TPM1-212ENST00000558347 KRTAP20-1Q3LI63 56 aa4.18□□□□□ -1.74
TPM1-212ENST00000558347 SPRR2FQ96RM1 72 aa4.17□□□□□ -1.74
TPM1-212ENST00000558347 KRTAP8-1Q8IUC2 63 aa4.14□□□□□ -1.75
TPM1-212ENST00000558347 LUZP6Q538Z0 58 aa4.13□□□□□ -1.75
TPM1-212ENST00000558347 SPRR2EP22531 72 aa4.11□□□□□ -1.75
TPM1-212ENST00000558347 SPRR2BP35325 72 aa4.11□□□□□ -1.75
TPM1-212ENST00000558347 SPRR2AP35326 72 aa4.11□□□□□ -1.75
TPM1-212ENST00000558347 SPRR5A0A1B0GTR4 108 aa4.09□□□□□ -1.75
TPM1-212ENST00000558347 KRTAP10-7P60409 375 aaPredicted RBP4.09□□□□□ -1.75
TPM1-212ENST00000558347 KRTAP4-11Q9BYQ6 195 aa4.07□□□□□ -1.76
TPM1-212ENST00000558347 KRTAP2-3P0C7H8 128 aa4.05□□□□□ -1.76
TPM1-212ENST00000558347 KRTAP10-12P60413 245 aa4.05□□□□□ -1.76
TPM1-212ENST00000558347 LCE1AQ5T7P2 110 aa4.05□□□□□ -1.76
TPM1-212ENST00000558347 KRTAP2-4Q9BYR9 128 aa4.05□□□□□ -1.76
TPM1-212ENST00000558347 LCE3AQ5TA76 89 aa4□□□□□ -1.77
TPM1-212ENST00000558347 SPRR2DP22532 72 aa3.97□□□□□ -1.77
TPM1-212ENST00000558347 KRTAP2-2Q9BYT5 123 aa3.94□□□□□ -1.78
TPM1-212ENST00000558347 KRTAP2-1Q9BYU5 128 aa3.94□□□□□ -1.78
TPM1-212ENST00000558347 A0A0A0MQY5 61 aa3.92□□□□□ -1.78
TPM1-212ENST00000558347 KRTAP12-3P60328 96 aa3.84□□□□□ -1.8
TPM1-212ENST00000558347 KRTAP19-7Q3SYF9 63 aa3.83□□□□□ -1.8
TPM1-212ENST00000558347 MT1EP04732 61 aa3.79□□□□□ -1.8
TPM1-212ENST00000558347 DSTQ03001 7570 aaKnown RBP3.79□□□□□ -1.8
TPM1-212ENST00000558347 LCE5AQ5TCM9 118 aa3.77□□□□□ -1.81
TPM1-212ENST00000558347 KRTAP19-3Q7Z4W3 81 aa3.75□□□□□ -1.81
TPM1-212ENST00000558347 KRTAP19-5Q3LI72 72 aa3.74□□□□□ -1.81
TPM1-212ENST00000558347 MT1GP13640 62 aa3.65□□□□□ -1.83
TPM1-212ENST00000558347 KRTAP19-4Q3LI73 84 aa3.63□□□□□ -1.83
TPM1-212ENST00000558347 LCE3CQ5T5A8 94 aa3.62□□□□□ -1.83
TPM1-212ENST00000558347 MT1LQ93083 61 aa3.62□□□□□ -1.83
TPM1-212ENST00000558347 INE1O15225 51 aa3.61□□□□□ -1.83
TPM1-212ENST00000558347 MT1MQ8N339 61 aa3.61□□□□□ -1.83
TPM1-212ENST00000558347 GPR98Q8WXG9 6306 aa3.6□□□□□ -1.83
TPM1-212ENST00000558347 HMCN1Q96RW7 5635 aa3.55□□□□□ -1.84
TPM1-212ENST00000558347 KRTAP4-3Q9BYR4 195 aa3.54□□□□□ -1.84
TPM1-212ENST00000558347 LCE4AQ5TA78 99 aa3.5□□□□□ -1.85
TPM1-212ENST00000558347 MT4P47944 62 aa3.49□□□□□ -1.85
TPM1-212ENST00000558347 KRTAP5-4Q6L8H1 288 aa3.45□□□□□ -1.86
TPM1-212ENST00000558347 AHNAK2Q8IVF2 5795 aa3.42□□□□□ -1.86
TPM1-212ENST00000558347 KRTAP9-6A8MVA2 160 aa3.41□□□□□ -1.86
TPM1-212ENST00000558347 KRTAP5-5Q701N2 237 aaPredicted RBP3.32□□□□□ -1.88
TPM1-212ENST00000558347 KRTAP5-10Q6L8G5 202 aa3.29□□□□□ -1.88
TPM1-212ENST00000558347 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.27□□□□□ -1.89
TPM1-212ENST00000558347 KRTAP20-2Q3LI61 65 aa3.26□□□□□ -1.89
TPM1-212ENST00000558347 SYNE1Q8NF91 8797 aaKnown RBP3.24□□□□□ -1.89
TPM1-212ENST00000558347 KRTAP12-4P60329 112 aa3.2□□□□□ -1.9
TPM1-212ENST00000558347 KRTAP5-7Q6L8G8 165 aa3.15□□□□□ -1.9
TPM1-212ENST00000558347 KRTAP6-1Q3LI64 71 aa3.08□□□□□ -1.92
TPM1-212ENST00000558347 MT1AP04731 61 aa3.07□□□□□ -1.92
TPM1-212ENST00000558347 KRTAP5-2Q701N4 177 aa3.02□□□□□ -1.93
TPM1-212ENST00000558347 KRTAP6-2Q3LI66 62 aa2.93□□□□□ -1.94
TPM1-212ENST00000558347 OBSCNQ5VST9 7968 aa2.9□□□□□ -1.94
TPM1-212ENST00000558347 KRTAP5-8O75690 187 aa2.88□□□□□ -1.95
TPM1-212ENST00000558347 MUC5BQ9HC84 5762 aaPredicted RBP2.85□□□□□ -1.95
TPM1-212ENST00000558347 AHNAKQ09666 5890 aaKnown RBP2.82□□□□□ -1.96
TPM1-212ENST00000558347 MT3P25713 68 aa2.79□□□□□ -1.96
TPM1-212ENST00000558347 MUC5ACP98088 5654 aa2.78□□□□□ -1.96
TPM1-212ENST00000558347 LCE3DQ9BYE3 92 aa2.78□□□□□ -1.97
TPM1-212ENST00000558347 LCE3EQ5T5B0 92 aa2.75□□□□□ -1.97
TPM1-212ENST00000558347 KRTAP5-1Q6L8H4 278 aa2.72□□□□□ -1.97
TPM1-212ENST00000558347 KRTAP5-11Q6L8G4 156 aa2.69□□□□□ -1.98
TPM1-212ENST00000558347 KRTAP4-4Q9BYR3 166 aa2.68□□□□□ -1.98
TPM1-212ENST00000558347 PRM1P04553 51 aa2.58□□□□□ -2
TPM1-212ENST00000558347 LCE1EQ5T753 118 aa2.57□□□□□ -2
TPM1-212ENST00000558347 LCE1BQ5T7P3 118 aa2.43□□□□□ -2.02
TPM1-212ENST00000558347 LCE1CQ5T751 118 aa2.39□□□□□ -2.03
TPM1-212ENST00000558347 LCE1FQ5T754 118 aa2.17□□□□□ -2.06
TPM1-212ENST00000558347 KRTAP21-2Q3LI59 83 aa2.02□□□□□ -2.09
TPM1-212ENST00000558347 PHGR1C9JFL3 82 aa1.91□□□□□ -2.1
TPM1-212ENST00000558347 MUC19Q7Z5P9 8384 aa1.78□□□□□ -2.12
TPM1-212ENST00000558347 KRTAP21-1Q3LI58 79 aa1.67□□□□□ -2.14
TPM1-212ENST00000558347 MUC16Q8WXI7 14507 aa1.22□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 74.3 ms