RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 SPRR2FQ96RM1 72 aa6.05□□□□□ -1.44
LDLR-206ENST00000557958 MT1EP04732 61 aa6.03□□□□□ -1.44
LDLR-206ENST00000557958 LCE3CQ5T5A8 94 aa6.03□□□□□ -1.44
LDLR-206ENST00000557958 MT1LQ93083 61 aa5.96□□□□□ -1.46
LDLR-206ENST00000557958 KRTAP5-9P26371 169 aa5.9□□□□□ -1.47
LDLR-206ENST00000557958 MUC12Q9UKN1 5478 aa5.89□□□□□ -1.47
LDLR-206ENST00000557958 KRTAP6-3Q3LI67 103 aa5.88□□□□□ -1.47
LDLR-206ENST00000557958 KRTAP9-7A8MTY7 169 aa5.84□□□□□ -1.47
LDLR-206ENST00000557958 INE1O15225 51 aa5.84□□□□□ -1.47
LDLR-206ENST00000557958 KRTAP19-3Q7Z4W3 81 aa5.79□□□□□ -1.48
LDLR-206ENST00000557958 SPRR2EP22531 72 aa5.77□□□□□ -1.49
LDLR-206ENST00000557958 SPRR2BP35325 72 aa5.77□□□□□ -1.49
LDLR-206ENST00000557958 SPRR2AP35326 72 aa5.77□□□□□ -1.49
LDLR-206ENST00000557958 MT1GP13640 62 aa5.76□□□□□ -1.49
LDLR-206ENST00000557958 KRTAP4-7Q9BYR0 210 aa5.74□□□□□ -1.49
LDLR-206ENST00000557958 LCE1AQ5T7P2 110 aa5.73□□□□□ -1.49
LDLR-206ENST00000557958 MDN1Q9NU22 5596 aa5.7□□□□□ -1.5
LDLR-206ENST00000557958 LCE5AQ5TCM9 118 aa5.68□□□□□ -1.5
LDLR-206ENST00000557958 MT1MQ8N339 61 aa5.66□□□□□ -1.5
LDLR-206ENST00000557958 KRTAP9-6A8MVA2 160 aa5.64□□□□□ -1.51
LDLR-206ENST00000557958 KRTAP4-3Q9BYR4 195 aa5.62□□□□□ -1.51
LDLR-206ENST00000557958 SPRR2DP22532 72 aa5.56□□□□□ -1.52
LDLR-206ENST00000557958 NEBP20929 6669 aa5.47□□□□□ -1.53
LDLR-206ENST00000557958 DSTQ03001 7570 aaKnown RBP5.46□□□□□ -1.54
LDLR-206ENST00000557958 KRTAP2-3P0C7H8 128 aa5.42□□□□□ -1.54
LDLR-206ENST00000557958 KRTAP2-4Q9BYR9 128 aa5.42□□□□□ -1.54
LDLR-206ENST00000557958 KRTAP2-1Q9BYU5 128 aa5.42□□□□□ -1.54
LDLR-206ENST00000557958 LOC100996750A0A140TA64 210 aa5.39□□□□□ -1.55
LDLR-206ENST00000557958 LCE3BQ5TA77 95 aa5.33□□□□□ -1.56
LDLR-206ENST00000557958 KRTAP20-1Q3LI63 56 aa5.17□□□□□ -1.58
LDLR-206ENST00000557958 KRTAP2-2Q9BYT5 123 aa5.08□□□□□ -1.6
LDLR-206ENST00000557958 MT1AP04731 61 aa5.07□□□□□ -1.6
LDLR-206ENST00000557958 KRTAP5-5Q701N2 237 aaPredicted RBP5.07□□□□□ -1.6
LDLR-206ENST00000557958 KRTAP6-1Q3LI64 71 aa4.99□□□□□ -1.61
LDLR-206ENST00000557958 KRTAP5-4Q6L8H1 288 aa4.88□□□□□ -1.63
LDLR-206ENST00000557958 MT4P47944 62 aa4.87□□□□□ -1.63
LDLR-206ENST00000557958 KRTAP4-9Q9BYQ8 210 aa4.86□□□□□ -1.63
LDLR-206ENST00000557958 LCE4AQ5TA78 99 aa4.85□□□□□ -1.63
LDLR-206ENST00000557958 SYNE1Q8NF91 8797 aaKnown RBP4.82□□□□□ -1.64
LDLR-206ENST00000557958 KRTAP12-4P60329 112 aa4.81□□□□□ -1.64
LDLR-206ENST00000557958 KRTAP9-4Q9BYQ2 154 aa4.79□□□□□ -1.64
LDLR-206ENST00000557958 KRTAP4-6Q9BYQ5 205 aa4.77□□□□□ -1.65
LDLR-206ENST00000557958 LCE1DQ5T752 114 aa4.75□□□□□ -1.65
LDLR-206ENST00000557958 KRTAP20-2Q3LI61 65 aa4.62□□□□□ -1.67
LDLR-206ENST00000557958 MT3P25713 68 aa4.61□□□□□ -1.67
LDLR-206ENST00000557958 KRTAP6-2Q3LI66 62 aa4.61□□□□□ -1.67
LDLR-206ENST00000557958 HMCN1Q96RW7 5635 aa4.59□□□□□ -1.67
LDLR-206ENST00000557958 LCE3DQ9BYE3 92 aa4.58□□□□□ -1.68
LDLR-206ENST00000557958 LCE3EQ5T5B0 92 aa4.48□□□□□ -1.69
LDLR-206ENST00000557958 KRTAP5-3Q6L8H2 238 aa4.43□□□□□ -1.7
LDLR-206ENST00000557958 KRTAP5-2Q701N4 177 aa4.39□□□□□ -1.71
LDLR-206ENST00000557958 OBSCNQ5VST9 7968 aa4.28□□□□□ -1.72
LDLR-206ENST00000557958 GPR98Q8WXG9 6306 aa4.18□□□□□ -1.74
LDLR-206ENST00000557958 PRM1P04553 51 aa4.18□□□□□ -1.74
LDLR-206ENST00000557958 AHNAK2Q8IVF2 5795 aa4.09□□□□□ -1.75
LDLR-206ENST00000557958 KRTAP4-11Q9BYQ6 195 aa4.05□□□□□ -1.76
LDLR-206ENST00000557958 KRTAP5-10Q6L8G5 202 aa4.02□□□□□ -1.77
LDLR-206ENST00000557958 LCE1EQ5T753 118 aa3.94□□□□□ -1.78
LDLR-206ENST00000557958 KRTAP5-8O75690 187 aa3.88□□□□□ -1.79
LDLR-206ENST00000557958 KRTAP5-7Q6L8G8 165 aa3.87□□□□□ -1.79
LDLR-206ENST00000557958 KRTAP5-1Q6L8H4 278 aa3.85□□□□□ -1.79
LDLR-206ENST00000557958 LCE1BQ5T7P3 118 aa3.81□□□□□ -1.8
LDLR-206ENST00000557958 KRTAP4-12Q9BQ66 201 aa3.73□□□□□ -1.81
LDLR-206ENST00000557958 KRTAP9-9Q9BYP9 154 aa3.71□□□□□ -1.82
LDLR-206ENST00000557958 LCE1CQ5T751 118 aa3.67□□□□□ -1.82
LDLR-206ENST00000557958 KRTAP4-2Q9BYR5 136 aa3.67□□□□□ -1.82
LDLR-206ENST00000557958 MUC5ACP98088 5654 aa3.63□□□□□ -1.83
LDLR-206ENST00000557958 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.45□□□□□ -1.86
LDLR-206ENST00000557958 MUC5BQ9HC84 5762 aaPredicted RBP3.33□□□□□ -1.88
LDLR-206ENST00000557958 AHNAKQ09666 5890 aaKnown RBP3.28□□□□□ -1.88
LDLR-206ENST00000557958 KRTAP21-2Q3LI59 83 aa3.25□□□□□ -1.89
LDLR-206ENST00000557958 KRTAP5-11Q6L8G4 156 aa3.22□□□□□ -1.89
LDLR-206ENST00000557958 KRTAP4-4Q9BYR3 166 aa2.98□□□□□ -1.93
LDLR-206ENST00000557958 LCE1FQ5T754 118 aa2.91□□□□□ -1.94
LDLR-206ENST00000557958 PHGR1C9JFL3 82 aa2.77□□□□□ -1.97
LDLR-206ENST00000557958 KRTAP21-1Q3LI58 79 aa2.69□□□□□ -1.98
LDLR-206ENST00000557958 MUC19Q7Z5P9 8384 aa2.55□□□□□ -2
LDLR-206ENST00000557958 MUC16Q8WXI7 14507 aa1.79□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 73.6 ms