RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 DNAH8Q96JB1 4490 aa0.74□□□□□ -2.29
TRAV28-201ENST00000557548 A0A096LPF7 62 aa0.74□□□□□ -2.29
TRAV28-201ENST00000557548 HTN3P15516 51 aa0.74□□□□□ -2.29
TRAV28-201ENST00000557548 SPINK6Q6UWN8 80 aa0.74□□□□□ -2.29
TRAV28-201ENST00000557548 FSIP2Q5CZC0 6907 aa0.73□□□□□ -2.29
TRAV28-201ENST00000557548 TNXBP22105 4242 aa0.73□□□□□ -2.29
TRAV28-201ENST00000557548 RPL39P62891 51 aaKnown RBP0.73□□□□□ -2.29
TRAV28-201ENST00000557548 PRCDQ00LT1 54 aa0.73□□□□□ -2.29
TRAV28-201ENST00000557548 KRTAP19-2Q3LHN2 52 aa0.73□□□□□ -2.29
TRAV28-201ENST00000557548 SPART-AS1P0CW21 52 aa0.72□□□□□ -2.29
TRAV28-201ENST00000557548 M0QY20 66 aa0.71□□□□□ -2.3
TRAV28-201ENST00000557548 SPINK1P00995 79 aa0.71□□□□□ -2.3
TRAV28-201ENST00000557548 RPL39LQ96EH5 51 aaKnown RBP0.71□□□□□ -2.3
TRAV28-201ENST00000557548 M0R2T5 61 aa0.7□□□□□ -2.3
TRAV28-201ENST00000557548 HTN1P15515 57 aa0.7□□□□□ -2.3
TRAV28-201ENST00000557548 DEFB104AQ8WTQ1 72 aa0.7□□□□□ -2.3
TRAV28-201ENST00000557548 FAT4Q6V0I7 4981 aa0.7□□□□□ -2.3
TRAV28-201ENST00000557548 H3BNG1 76 aa0.69□□□□□ -2.3
TRAV28-201ENST00000557548 A0A096LNI7 61 aa0.68□□□□□ -2.3
TRAV28-201ENST00000557548 LINC01556Q5JQF7 62 aa0.68□□□□□ -2.3
TRAV28-201ENST00000557548 KRTAP19-3Q7Z4W3 81 aa0.68□□□□□ -2.3
TRAV28-201ENST00000557548 MT1HP80294 61 aa0.67□□□□□ -2.3
TRAV28-201ENST00000557548 CLPSL2Q6UWE3 100 aa0.67□□□□□ -2.3
TRAV28-201ENST00000557548 MUC17Q685J3 4493 aa0.66□□□□□ -2.3
TRAV28-201ENST00000557548 FLGP20930 4061 aaPredicted RBP0.65□□□□□ -2.3
TRAV28-201ENST00000557548 TOMM7Q9P0U1 55 aa0.65□□□□□ -2.31
TRAV28-201ENST00000557548 SSPOA2VEC9 5147 aa0.65□□□□□ -2.31
TRAV28-201ENST00000557548 USH2AO75445 5202 aa0.65□□□□□ -2.31
TRAV28-201ENST00000557548 M0QZ58 72 aa0.64□□□□□ -2.31
TRAV28-201ENST00000557548 KRTAP2-3P0C7H8 128 aa0.63□□□□□ -2.31
TRAV28-201ENST00000557548 KRTAP2-4Q9BYR9 128 aa0.63□□□□□ -2.31
TRAV28-201ENST00000557548 KRTAP2-1Q9BYU5 128 aa0.63□□□□□ -2.31
TRAV28-201ENST00000557548 SYNE2Q8WXH0 6885 aaKnown RBP0.63□□□□□ -2.31
TRAV28-201ENST00000557548 MACF1Q9UPN3 7388 aaKnown RBP0.63□□□□□ -2.31
TRAV28-201ENST00000557548 C9orf92A6NGG3 77 aa0.62□□□□□ -2.31
TRAV28-201ENST00000557548 MT1FP04733 61 aa0.62□□□□□ -2.31
TRAV28-201ENST00000557548 MT2AP02795 61 aa0.61□□□□□ -2.31
TRAV28-201ENST00000557548 KRTAP19-6Q3LI70 58 aa0.6□□□□□ -2.31
TRAV28-201ENST00000557548 TNP1P09430 55 aa0.59□□□□□ -2.31
TRAV28-201ENST00000557548 PRM1P04553 51 aa0.58□□□□□ -2.32
TRAV28-201ENST00000557548 MT1BP07438 61 aa0.56□□□□□ -2.32
TRAV28-201ENST00000557548 KRTAP20-1Q3LI63 56 aa0.56□□□□□ -2.32
TRAV28-201ENST00000557548 NEBP20929 6669 aa0.55□□□□□ -2.32
TRAV28-201ENST00000557548 MUC12Q9UKN1 5478 aa0.54□□□□□ -2.32
TRAV28-201ENST00000557548 KRTAP5-10Q6L8G5 202 aa0.54□□□□□ -2.32
TRAV28-201ENST00000557548 KMT2DO14686 5537 aa0.54□□□□□ -2.32
TRAV28-201ENST00000557548 RPS29P62273 56 aaKnown RBP0.53□□□□□ -2.32
TRAV28-201ENST00000557548 SPRR2DP22532 72 aa0.51□□□□□ -2.33
TRAV28-201ENST00000557548 KRTAP19-8Q3LI54 63 aa0.51□□□□□ -2.33
TRAV28-201ENST00000557548 DSTQ03001 7570 aaKnown RBP0.5□□□□□ -2.33
TRAV28-201ENST00000557548 SPRR2EP22531 72 aa0.5□□□□□ -2.33
TRAV28-201ENST00000557548 SPRR2BP35325 72 aa0.5□□□□□ -2.33
TRAV28-201ENST00000557548 SPRR2AP35326 72 aa0.5□□□□□ -2.33
TRAV28-201ENST00000557548 MT1XP80297 61 aa0.5□□□□□ -2.33
TRAV28-201ENST00000557548 SPRR2FQ96RM1 72 aa0.5□□□□□ -2.33
TRAV28-201ENST00000557548 SPRR2GQ9BYE4 73 aa0.49□□□□□ -2.33
TRAV28-201ENST00000557548 SYNE1Q8NF91 8797 aaKnown RBP0.48□□□□□ -2.33
TRAV28-201ENST00000557548 MDN1Q9NU22 5596 aa0.47□□□□□ -2.33
TRAV28-201ENST00000557548 KRTAP21-1Q3LI58 79 aa0.47□□□□□ -2.33
TRAV28-201ENST00000557548 MUC16Q8WXI7 14507 aa0.47□□□□□ -2.33
TRAV28-201ENST00000557548 KRTAP19-7Q3SYF9 63 aa0.46□□□□□ -2.34
TRAV28-201ENST00000557548 AHNAKQ09666 5890 aaKnown RBP0.46□□□□□ -2.34
TRAV28-201ENST00000557548 MT4P47944 62 aa0.45□□□□□ -2.34
TRAV28-201ENST00000557548 KRTAP8-1Q8IUC2 63 aa0.45□□□□□ -2.34
TRAV28-201ENST00000557548 MUC5BQ9HC84 5762 aaPredicted RBP0.44□□□□□ -2.34
TRAV28-201ENST00000557548 GPR98Q8WXG9 6306 aa0.44□□□□□ -2.34
TRAV28-201ENST00000557548 MT1EP04732 61 aa0.43□□□□□ -2.34
TRAV28-201ENST00000557548 MT1MQ8N339 61 aa0.42□□□□□ -2.34
TRAV28-201ENST00000557548 MT1AP04731 61 aa0.41□□□□□ -2.34
TRAV28-201ENST00000557548 KRTAP20-2Q3LI61 65 aa0.41□□□□□ -2.34
TRAV28-201ENST00000557548 MT1LQ93083 61 aa0.4□□□□□ -2.35
TRAV28-201ENST00000557548 KRTAP6-2Q3LI66 62 aa0.39□□□□□ -2.35
TRAV28-201ENST00000557548 KRTAP19-5Q3LI72 72 aa0.39□□□□□ -2.35
TRAV28-201ENST00000557548 MT1GP13640 62 aa0.38□□□□□ -2.35
TRAV28-201ENST00000557548 KRTAP6-1Q3LI64 71 aa0.36□□□□□ -2.35
TRAV28-201ENST00000557548 MUC5ACP98088 5654 aa0.34□□□□□ -2.35
TRAV28-201ENST00000557548 PHGR1C9JFL3 82 aa0.33□□□□□ -2.36
Retrieved 77 of 20,778 RNA–protein pairs in 86.8 ms