RNA–Protein interactions for RNA: ENST00000543555.5

MSH2-206, Transcript of mutS homolog 2, humanhuman

TSL 2 BASIC

Gene MSH2, Length 3,024 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-206ENST00000543555 MDN1Q9NU22 5596 aa4.89□□□□□ -1.63
MSH2-206ENST00000543555 KRTAP19-4Q3LI73 84 aa4.88□□□□□ -1.63
MSH2-206ENST00000543555 MT1LQ93083 61 aa4.88□□□□□ -1.63
MSH2-206ENST00000543555 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.86□□□□□ -1.63
MSH2-206ENST00000543555 KRTAP4-7Q9BYR0 210 aa4.84□□□□□ -1.63
MSH2-206ENST00000543555 KRTAP9-6A8MVA2 160 aa4.84□□□□□ -1.63
MSH2-206ENST00000543555 SPRR2FQ96RM1 72 aa4.82□□□□□ -1.64
MSH2-206ENST00000543555 DSTQ03001 7570 aaKnown RBP4.82□□□□□ -1.64
MSH2-206ENST00000543555 INE1O15225 51 aa4.66□□□□□ -1.66
MSH2-206ENST00000543555 KRTAP9-7A8MTY7 169 aa4.65□□□□□ -1.66
MSH2-206ENST00000543555 KRTAP19-3Q7Z4W3 81 aa4.63□□□□□ -1.67
MSH2-206ENST00000543555 KRTAP2-3P0C7H8 128 aa4.62□□□□□ -1.67
MSH2-206ENST00000543555 KRTAP2-4Q9BYR9 128 aa4.62□□□□□ -1.67
MSH2-206ENST00000543555 KRTAP2-1Q9BYU5 128 aa4.62□□□□□ -1.67
MSH2-206ENST00000543555 MT1GP13640 62 aa4.6□□□□□ -1.67
MSH2-206ENST00000543555 KRTAP5-9P26371 169 aa4.6□□□□□ -1.67
MSH2-206ENST00000543555 MT1MQ8N339 61 aa4.6□□□□□ -1.67
MSH2-206ENST00000543555 KRTAP4-3Q9BYR4 195 aa4.59□□□□□ -1.67
MSH2-206ENST00000543555 KRTAP6-3Q3LI67 103 aa4.58□□□□□ -1.68
MSH2-206ENST00000543555 SPRR2EP22531 72 aa4.56□□□□□ -1.68
MSH2-206ENST00000543555 SPRR2BP35325 72 aa4.56□□□□□ -1.68
MSH2-206ENST00000543555 SPRR2AP35326 72 aa4.56□□□□□ -1.68
MSH2-206ENST00000543555 LCE1AQ5T7P2 110 aa4.54□□□□□ -1.68
MSH2-206ENST00000543555 LOC100996750A0A140TA64 210 aa4.53□□□□□ -1.68
MSH2-206ENST00000543555 LCE5AQ5TCM9 118 aa4.49□□□□□ -1.69
MSH2-206ENST00000543555 NEBP20929 6669 aa4.45□□□□□ -1.7
MSH2-206ENST00000543555 SPRR2DP22532 72 aa4.38□□□□□ -1.71
MSH2-206ENST00000543555 SYNE1Q8NF91 8797 aaKnown RBP4.23□□□□□ -1.73
MSH2-206ENST00000543555 LCE3BQ5TA77 95 aa4.21□□□□□ -1.74
MSH2-206ENST00000543555 KRTAP6-1Q3LI64 71 aa4.12□□□□□ -1.75
MSH2-206ENST00000543555 MT1AP04731 61 aa4.12□□□□□ -1.75
MSH2-206ENST00000543555 KRTAP5-5Q701N2 237 aaPredicted RBP4.1□□□□□ -1.75
MSH2-206ENST00000543555 KRTAP20-1Q3LI63 56 aa4.06□□□□□ -1.76
MSH2-206ENST00000543555 OBSCNQ5VST9 7968 aa4.04□□□□□ -1.76
MSH2-206ENST00000543555 KRTAP12-4P60329 112 aa4.02□□□□□ -1.77
MSH2-206ENST00000543555 KRTAP4-9Q9BYQ8 210 aa3.99□□□□□ -1.77
MSH2-206ENST00000543555 KRTAP2-2Q9BYT5 123 aa3.97□□□□□ -1.77
MSH2-206ENST00000543555 MT4P47944 62 aa3.94□□□□□ -1.78
MSH2-206ENST00000543555 KRTAP9-4Q9BYQ2 154 aa3.88□□□□□ -1.79
MSH2-206ENST00000543555 KRTAP4-6Q9BYQ5 205 aa3.86□□□□□ -1.79
MSH2-206ENST00000543555 LCE3DQ9BYE3 92 aa3.86□□□□□ -1.79
MSH2-206ENST00000543555 HMCN1Q96RW7 5635 aa3.85□□□□□ -1.79
MSH2-206ENST00000543555 LCE3EQ5T5B0 92 aa3.79□□□□□ -1.8
MSH2-206ENST00000543555 LCE1DQ5T752 114 aa3.79□□□□□ -1.8
MSH2-206ENST00000543555 KRTAP5-4Q6L8H1 288 aa3.79□□□□□ -1.8
MSH2-206ENST00000543555 KRTAP6-2Q3LI66 62 aa3.73□□□□□ -1.81
MSH2-206ENST00000543555 LCE4AQ5TA78 99 aa3.72□□□□□ -1.81
MSH2-206ENST00000543555 MT3P25713 68 aa3.7□□□□□ -1.82
MSH2-206ENST00000543555 KRTAP20-2Q3LI61 65 aa3.64□□□□□ -1.83
MSH2-206ENST00000543555 PRM1P04553 51 aa3.53□□□□□ -1.84
MSH2-206ENST00000543555 KRTAP5-3Q6L8H2 238 aa3.47□□□□□ -1.85
MSH2-206ENST00000543555 KRTAP5-2Q701N4 177 aa3.43□□□□□ -1.86
MSH2-206ENST00000543555 AHNAK2Q8IVF2 5795 aa3.36□□□□□ -1.87
MSH2-206ENST00000543555 KRTAP4-11Q9BYQ6 195 aa3.21□□□□□ -1.9
MSH2-206ENST00000543555 GPR98Q8WXG9 6306 aa3.19□□□□□ -1.9
MSH2-206ENST00000543555 KRTAP5-10Q6L8G5 202 aa3.14□□□□□ -1.91
MSH2-206ENST00000543555 MUC5ACP98088 5654 aa3.1□□□□□ -1.91
MSH2-206ENST00000543555 LCE1EQ5T753 118 aa3.09□□□□□ -1.91
MSH2-206ENST00000543555 KRTAP5-8O75690 187 aa3.07□□□□□ -1.92
MSH2-206ENST00000543555 LCE1BQ5T7P3 118 aa3.06□□□□□ -1.92
MSH2-206ENST00000543555 KRTAP5-1Q6L8H4 278 aa3.04□□□□□ -1.92
MSH2-206ENST00000543555 MUC5BQ9HC84 5762 aaPredicted RBP2.94□□□□□ -1.94
MSH2-206ENST00000543555 KRTAP4-2Q9BYR5 136 aa2.92□□□□□ -1.94
MSH2-206ENST00000543555 LCE1CQ5T751 118 aa2.9□□□□□ -1.94
MSH2-206ENST00000543555 KRTAP5-7Q6L8G8 165 aa2.84□□□□□ -1.95
MSH2-206ENST00000543555 KRTAP9-9Q9BYP9 154 aa2.78□□□□□ -1.96
MSH2-206ENST00000543555 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.74□□□□□ -1.97
MSH2-206ENST00000543555 KRTAP21-2Q3LI59 83 aa2.68□□□□□ -1.98
MSH2-206ENST00000543555 KRTAP4-12Q9BQ66 201 aa2.65□□□□□ -1.99
MSH2-206ENST00000543555 AHNAKQ09666 5890 aaKnown RBP2.54□□□□□ -2
MSH2-206ENST00000543555 KRTAP5-11Q6L8G4 156 aa2.52□□□□□ -2.01
MSH2-206ENST00000543555 KRTAP4-4Q9BYR3 166 aa2.48□□□□□ -2.01
MSH2-206ENST00000543555 MUC19Q7Z5P9 8384 aa2.43□□□□□ -2.02
MSH2-206ENST00000543555 LCE1FQ5T754 118 aa2.25□□□□□ -2.05
MSH2-206ENST00000543555 KRTAP21-1Q3LI58 79 aa2.21□□□□□ -2.06
MSH2-206ENST00000543555 PHGR1C9JFL3 82 aa2.17□□□□□ -2.06
MSH2-206ENST00000543555 MUC16Q8WXI7 14507 aa1.43□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 56.8 ms