RNA–Protein interactions for RNA: ENST00000541586.5

CCM2-218, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,719 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-218ENST00000541586 SPRR2AP35326 72 aa10.18□□□□□ -0.78
CCM2-218ENST00000541586 KRTAP15-1Q3LI76 137 aa10.13□□□□□ -0.79
CCM2-218ENST00000541586 NEBP20929 6669 aa10.13□□□□□ -0.79
CCM2-218ENST00000541586 MT1EP04732 61 aa10.1□□□□□ -0.79
CCM2-218ENST00000541586 LCE1AQ5T7P2 110 aa10.1□□□□□ -0.79
CCM2-218ENST00000541586 KRTAP19-3Q7Z4W3 81 aa9.87□□□□□ -0.83
CCM2-218ENST00000541586 MT1LQ93083 61 aa9.86□□□□□ -0.83
CCM2-218ENST00000541586 SPRR2DP22532 72 aa9.82□□□□□ -0.84
CCM2-218ENST00000541586 LCE5AQ5TCM9 118 aa9.78□□□□□ -0.84
CCM2-218ENST00000541586 MT1GP13640 62 aa9.71□□□□□ -0.85
CCM2-218ENST00000541586 LCE3CQ5T5A8 94 aa9.68□□□□□ -0.86
CCM2-218ENST00000541586 KRTAP19-4Q3LI73 84 aa9.65□□□□□ -0.86
CCM2-218ENST00000541586 KRTAP20-1Q3LI63 56 aa9.65□□□□□ -0.87
CCM2-218ENST00000541586 SPRR5A0A1B0GTR4 108 aa9.6□□□□□ -0.87
CCM2-218ENST00000541586 KRTAP2-3P0C7H8 128 aa9.58□□□□□ -0.88
CCM2-218ENST00000541586 KRTAP2-4Q9BYR9 128 aa9.58□□□□□ -0.88
CCM2-218ENST00000541586 MT1MQ8N339 61 aa9.56□□□□□ -0.88
CCM2-218ENST00000541586 KRTAP4-7Q9BYR0 210 aa9.56□□□□□ -0.88
CCM2-218ENST00000541586 DSTQ03001 7570 aaKnown RBP9.52□□□□□ -0.89
CCM2-218ENST00000541586 LCE3BQ5TA77 95 aa9.5□□□□□ -0.89
CCM2-218ENST00000541586 KRTAP4-3Q9BYR4 195 aa9.4□□□□□ -0.9
CCM2-218ENST00000541586 KRTAP2-2Q9BYT5 123 aa9.34□□□□□ -0.92
CCM2-218ENST00000541586 KRTAP2-1Q9BYU5 128 aa9.34□□□□□ -0.92
CCM2-218ENST00000541586 LUZP6Q538Z0 58 aa9.21□□□□□ -0.94
CCM2-218ENST00000541586 KRTAP9-6A8MVA2 160 aa9.19□□□□□ -0.94
CCM2-218ENST00000541586 LOC100996750A0A140TA64 210 aa8.99□□□□□ -0.97
CCM2-218ENST00000541586 NDUFAF8A1L188 74 aa8.97□□□□□ -0.97
CCM2-218ENST00000541586 KRTAP4-9Q9BYQ8 210 aa8.7□□□□□ -1.02
CCM2-218ENST00000541586 LCE4AQ5TA78 99 aa8.66□□□□□ -1.02
CCM2-218ENST00000541586 KRTAP5-5Q701N2 237 aaPredicted RBP8.66□□□□□ -1.02
CCM2-218ENST00000541586 KRTAP5-4Q6L8H1 288 aa8.62□□□□□ -1.03
CCM2-218ENST00000541586 MT4P47944 62 aa8.59□□□□□ -1.03
CCM2-218ENST00000541586 LCE1DQ5T752 114 aa8.52□□□□□ -1.05
CCM2-218ENST00000541586 KRTAP4-6Q9BYQ5 205 aa8.4□□□□□ -1.06
CCM2-218ENST00000541586 MT1AP04731 61 aa8.36□□□□□ -1.07
CCM2-218ENST00000541586 HMCN1Q96RW7 5635 aa8.35□□□□□ -1.07
CCM2-218ENST00000541586 SYNE1Q8NF91 8797 aaKnown RBP8.33□□□□□ -1.08
CCM2-218ENST00000541586 KRTAP6-1Q3LI64 71 aa8.32□□□□□ -1.08
CCM2-218ENST00000541586 KRTAP12-4P60329 112 aa8.31□□□□□ -1.08
CCM2-218ENST00000541586 H3BS24 57 aa8.19□□□□□ -1.1
CCM2-218ENST00000541586 KRTAP20-2Q3LI61 65 aa8.14□□□□□ -1.11
CCM2-218ENST00000541586 KRTAP9-4Q9BYQ2 154 aa7.98□□□□□ -1.13
CCM2-218ENST00000541586 KRTAP5-3Q6L8H2 238 aa7.84□□□□□ -1.15
CCM2-218ENST00000541586 A0A0A0MQY5 61 aa7.79□□□□□ -1.16
CCM2-218ENST00000541586 KRTAP6-2Q3LI66 62 aa7.77□□□□□ -1.17
CCM2-218ENST00000541586 AHNAK2Q8IVF2 5795 aa7.76□□□□□ -1.17
CCM2-218ENST00000541586 KRTAP5-2Q701N4 177 aa7.68□□□□□ -1.18
CCM2-218ENST00000541586 GPR98Q8WXG9 6306 aa7.64□□□□□ -1.19
CCM2-218ENST00000541586 MT3P25713 68 aa7.6□□□□□ -1.19
CCM2-218ENST00000541586 KRTAP5-10Q6L8G5 202 aa7.47□□□□□ -1.21
CCM2-218ENST00000541586 INE1O15225 51 aa7.34□□□□□ -1.23
CCM2-218ENST00000541586 OBSCNQ5VST9 7968 aa7.33□□□□□ -1.24
CCM2-218ENST00000541586 KRTAP4-11Q9BYQ6 195 aa7.26□□□□□ -1.25
CCM2-218ENST00000541586 LCE3DQ9BYE3 92 aa7.25□□□□□ -1.25
CCM2-218ENST00000541586 KRTAP5-7Q6L8G8 165 aa7.05□□□□□ -1.28
CCM2-218ENST00000541586 LCE3EQ5T5B0 92 aa7.04□□□□□ -1.28
CCM2-218ENST00000541586 KRTAP5-8O75690 187 aa6.98□□□□□ -1.29
CCM2-218ENST00000541586 KRTAP5-1Q6L8H4 278 aa6.79□□□□□ -1.32
CCM2-218ENST00000541586 LCE1EQ5T753 118 aa6.73□□□□□ -1.33
CCM2-218ENST00000541586 MUC5ACP98088 5654 aa6.59□□□□□ -1.36
CCM2-218ENST00000541586 KRTAP9-9Q9BYP9 154 aa6.5□□□□□ -1.37
CCM2-218ENST00000541586 LCE1BQ5T7P3 118 aa6.42□□□□□ -1.38
CCM2-218ENST00000541586 KRTAP4-2Q9BYR5 136 aa6.32□□□□□ -1.4
CCM2-218ENST00000541586 MUC5BQ9HC84 5762 aaPredicted RBP6.28□□□□□ -1.4
CCM2-218ENST00000541586 LCE1CQ5T751 118 aa6.27□□□□□ -1.41
CCM2-218ENST00000541586 AHNAKQ09666 5890 aaKnown RBP6.14□□□□□ -1.43
CCM2-218ENST00000541586 PRM1P04553 51 aa6.11□□□□□ -1.43
CCM2-218ENST00000541586 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.75□□□□□ -1.49
CCM2-218ENST00000541586 KRTAP5-11Q6L8G4 156 aa5.59□□□□□ -1.51
CCM2-218ENST00000541586 KRTAP4-12Q9BQ66 201 aa5.57□□□□□ -1.52
CCM2-218ENST00000541586 KRTAP21-2Q3LI59 83 aa5.44□□□□□ -1.54
CCM2-218ENST00000541586 LCE1FQ5T754 118 aa5.24□□□□□ -1.57
CCM2-218ENST00000541586 KRTAP4-4Q9BYR3 166 aa4.95□□□□□ -1.62
CCM2-218ENST00000541586 PHGR1C9JFL3 82 aa4.82□□□□□ -1.64
CCM2-218ENST00000541586 MUC19Q7Z5P9 8384 aa4.45□□□□□ -1.7
CCM2-218ENST00000541586 KRTAP21-1Q3LI58 79 aa3.71□□□□□ -1.82
CCM2-218ENST00000541586 MUC16Q8WXI7 14507 aa3.09□□□□□ -1.91
Retrieved 77 of 20,778 RNA–protein pairs in 11.4 ms