RNA–Protein interactions for RNA: ENST00000538696.5

CLN6-202, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2 BASIC

Gene CLN6, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-202ENST00000538696 SPRR2EP22531 72 aa6.33□□□□□ -1.4
CLN6-202ENST00000538696 SPRR2BP35325 72 aa6.33□□□□□ -1.4
CLN6-202ENST00000538696 SPRR2AP35326 72 aa6.33□□□□□ -1.4
CLN6-202ENST00000538696 LCE1AQ5T7P2 110 aa6.32□□□□□ -1.4
CLN6-202ENST00000538696 H3BS24 57 aa6.27□□□□□ -1.41
CLN6-202ENST00000538696 KRTAP15-1Q3LI76 137 aa6.22□□□□□ -1.41
CLN6-202ENST00000538696 KRTAP19-3Q7Z4W3 81 aa6.18□□□□□ -1.42
CLN6-202ENST00000538696 MT1LQ93083 61 aa6.15□□□□□ -1.43
CLN6-202ENST00000538696 LCE5AQ5TCM9 118 aa6.12□□□□□ -1.43
CLN6-202ENST00000538696 SPRR2DP22532 72 aa6.11□□□□□ -1.43
CLN6-202ENST00000538696 MT1GP13640 62 aa6.07□□□□□ -1.44
CLN6-202ENST00000538696 MT1MQ8N339 61 aa6□□□□□ -1.45
CLN6-202ENST00000538696 KRTAP20-1Q3LI63 56 aa5.99□□□□□ -1.45
CLN6-202ENST00000538696 KRTAP2-3P0C7H8 128 aa5.95□□□□□ -1.46
CLN6-202ENST00000538696 KRTAP2-4Q9BYR9 128 aa5.95□□□□□ -1.46
CLN6-202ENST00000538696 LCE3CQ5T5A8 94 aa5.94□□□□□ -1.46
CLN6-202ENST00000538696 LCE3BQ5TA77 95 aa5.9□□□□□ -1.47
CLN6-202ENST00000538696 KRTAP4-7Q9BYR0 210 aa5.9□□□□□ -1.47
CLN6-202ENST00000538696 KRTAP19-4Q3LI73 84 aa5.89□□□□□ -1.47
CLN6-202ENST00000538696 SPRR5A0A1B0GTR4 108 aa5.88□□□□□ -1.47
CLN6-202ENST00000538696 KRTAP4-3Q9BYR4 195 aa5.87□□□□□ -1.47
CLN6-202ENST00000538696 DSTQ03001 7570 aaKnown RBP5.8□□□□□ -1.48
CLN6-202ENST00000538696 KRTAP2-2Q9BYT5 123 aa5.78□□□□□ -1.48
CLN6-202ENST00000538696 KRTAP2-1Q9BYU5 128 aa5.78□□□□□ -1.48
CLN6-202ENST00000538696 KRTAP9-6A8MVA2 160 aa5.66□□□□□ -1.5
CLN6-202ENST00000538696 LUZP6Q538Z0 58 aa5.58□□□□□ -1.52
CLN6-202ENST00000538696 LOC100996750A0A140TA64 210 aa5.55□□□□□ -1.52
CLN6-202ENST00000538696 KRTAP5-5Q701N2 237 aaPredicted RBP5.47□□□□□ -1.53
CLN6-202ENST00000538696 NDUFAF8A1L188 74 aa5.46□□□□□ -1.54
CLN6-202ENST00000538696 KRTAP5-4Q6L8H1 288 aa5.44□□□□□ -1.54
CLN6-202ENST00000538696 A0A0A0MQY5 61 aa5.43□□□□□ -1.54
CLN6-202ENST00000538696 LCE4AQ5TA78 99 aa5.42□□□□□ -1.54
CLN6-202ENST00000538696 KRTAP4-9Q9BYQ8 210 aa5.36□□□□□ -1.55
CLN6-202ENST00000538696 KRTAP4-6Q9BYQ5 205 aa5.34□□□□□ -1.55
CLN6-202ENST00000538696 MT4P47944 62 aa5.3□□□□□ -1.56
CLN6-202ENST00000538696 LCE1DQ5T752 114 aa5.3□□□□□ -1.56
CLN6-202ENST00000538696 MT1AP04731 61 aa5.23□□□□□ -1.57
CLN6-202ENST00000538696 SYNE1Q8NF91 8797 aaKnown RBP5.21□□□□□ -1.58
CLN6-202ENST00000538696 HMCN1Q96RW7 5635 aa5.2□□□□□ -1.58
CLN6-202ENST00000538696 KRTAP6-1Q3LI64 71 aa5.19□□□□□ -1.58
CLN6-202ENST00000538696 KRTAP12-4P60329 112 aa5.14□□□□□ -1.59
CLN6-202ENST00000538696 KRTAP20-2Q3LI61 65 aa5.09□□□□□ -1.59
CLN6-202ENST00000538696 GPR98Q8WXG9 6306 aa5.06□□□□□ -1.6
CLN6-202ENST00000538696 KRTAP9-4Q9BYQ2 154 aa4.99□□□□□ -1.61
CLN6-202ENST00000538696 KRTAP5-3Q6L8H2 238 aa4.94□□□□□ -1.62
CLN6-202ENST00000538696 AHNAK2Q8IVF2 5795 aa4.87□□□□□ -1.63
CLN6-202ENST00000538696 KRTAP5-2Q701N4 177 aa4.86□□□□□ -1.63
CLN6-202ENST00000538696 KRTAP6-2Q3LI66 62 aa4.84□□□□□ -1.63
CLN6-202ENST00000538696 KRTAP4-12Q9BQ66 201 aa4.84□□□□□ -1.63
CLN6-202ENST00000538696 MT3P25713 68 aa4.74□□□□□ -1.65
CLN6-202ENST00000538696 KRTAP5-10Q6L8G5 202 aa4.67□□□□□ -1.66
CLN6-202ENST00000538696 KRTAP9-9Q9BYP9 154 aa4.63□□□□□ -1.67
CLN6-202ENST00000538696 KRTAP4-11Q9BYQ6 195 aa4.51□□□□□ -1.69
CLN6-202ENST00000538696 INE1O15225 51 aa4.46□□□□□ -1.7
CLN6-202ENST00000538696 OBSCNQ5VST9 7968 aa4.45□□□□□ -1.7
CLN6-202ENST00000538696 LCE3DQ9BYE3 92 aa4.43□□□□□ -1.7
CLN6-202ENST00000538696 KRTAP5-7Q6L8G8 165 aa4.42□□□□□ -1.7
CLN6-202ENST00000538696 KRTAP5-8O75690 187 aa4.37□□□□□ -1.71
CLN6-202ENST00000538696 LCE3EQ5T5B0 92 aa4.31□□□□□ -1.72
CLN6-202ENST00000538696 KRTAP5-1Q6L8H4 278 aa4.25□□□□□ -1.73
CLN6-202ENST00000538696 LCE1EQ5T753 118 aa4.22□□□□□ -1.73
CLN6-202ENST00000538696 KRTAP4-2Q9BYR5 136 aa4.16□□□□□ -1.74
CLN6-202ENST00000538696 MUC5ACP98088 5654 aa4.16□□□□□ -1.74
CLN6-202ENST00000538696 LCE1BQ5T7P3 118 aa3.95□□□□□ -1.78
CLN6-202ENST00000538696 LCE1CQ5T751 118 aa3.93□□□□□ -1.78
CLN6-202ENST00000538696 MUC5BQ9HC84 5762 aaPredicted RBP3.91□□□□□ -1.78
CLN6-202ENST00000538696 AHNAKQ09666 5890 aaKnown RBP3.88□□□□□ -1.79
CLN6-202ENST00000538696 PRM1P04553 51 aa3.75□□□□□ -1.81
CLN6-202ENST00000538696 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.65□□□□□ -1.83
CLN6-202ENST00000538696 KRTAP5-11Q6L8G4 156 aa3.53□□□□□ -1.84
CLN6-202ENST00000538696 KRTAP21-2Q3LI59 83 aa3.41□□□□□ -1.86
CLN6-202ENST00000538696 LCE1FQ5T754 118 aa3.28□□□□□ -1.88
CLN6-202ENST00000538696 KRTAP4-4Q9BYR3 166 aa3.06□□□□□ -1.92
CLN6-202ENST00000538696 PHGR1C9JFL3 82 aa3.02□□□□□ -1.93
CLN6-202ENST00000538696 MUC19Q7Z5P9 8384 aa2.68□□□□□ -1.98
CLN6-202ENST00000538696 KRTAP21-1Q3LI58 79 aa2.26□□□□□ -2.05
CLN6-202ENST00000538696 MUC16Q8WXI7 14507 aa1.94□□□□□ -2.1
Retrieved 77 of 20,778 RNA–protein pairs in 120.5 ms