RNA–Protein interactions for RNA: ENST00000535479.5

LPCAT3-203, Transcript of lysophosphatidylcholine acyltransferase 3, humanhuman

TSL 1 (best)

Gene LPCAT3, Length 2,902 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPCAT3-203ENST00000535479 LOC100996750A0A140TA64 210 aa4.86□□□□□ -1.63
LPCAT3-203ENST00000535479 SYNE1Q8NF91 8797 aaKnown RBP4.82□□□□□ -1.64
LPCAT3-203ENST00000535479 OBSCNQ5VST9 7968 aa4.8□□□□□ -1.64
LPCAT3-203ENST00000535479 MT1LQ93083 61 aa4.73□□□□□ -1.65
LPCAT3-203ENST00000535479 MT1EP04732 61 aa4.69□□□□□ -1.66
LPCAT3-203ENST00000535479 MT1GP13640 62 aa4.69□□□□□ -1.66
LPCAT3-203ENST00000535479 KRTAP2-3P0C7H8 128 aa4.62□□□□□ -1.67
LPCAT3-203ENST00000535479 KRTAP2-4Q9BYR9 128 aa4.62□□□□□ -1.67
LPCAT3-203ENST00000535479 KRTAP2-1Q9BYU5 128 aa4.62□□□□□ -1.67
LPCAT3-203ENST00000535479 SYNE2Q8WXH0 6885 aaKnown RBP4.62□□□□□ -1.67
LPCAT3-203ENST00000535479 MDN1Q9NU22 5596 aa4.51□□□□□ -1.69
LPCAT3-203ENST00000535479 KRTAP4-9Q9BYQ8 210 aa4.51□□□□□ -1.69
LPCAT3-203ENST00000535479 MACF1Q9UPN3 7388 aaKnown RBP4.5□□□□□ -1.69
LPCAT3-203ENST00000535479 LCE3BQ5TA77 95 aa4.42□□□□□ -1.7
LPCAT3-203ENST00000535479 MT1MQ8N339 61 aa4.4□□□□□ -1.71
LPCAT3-203ENST00000535479 KRTAP12-4P60329 112 aa4.39□□□□□ -1.71
LPCAT3-203ENST00000535479 SPRR2FQ96RM1 72 aa4.36□□□□□ -1.71
LPCAT3-203ENST00000535479 KRTAP19-6Q3LI70 58 aa4.33□□□□□ -1.72
LPCAT3-203ENST00000535479 KRTAP19-3Q7Z4W3 81 aa4.33□□□□□ -1.72
LPCAT3-203ENST00000535479 KRTAP6-1Q3LI64 71 aa4.15□□□□□ -1.75
LPCAT3-203ENST00000535479 LCE5AQ5TCM9 118 aa4.12□□□□□ -1.75
LPCAT3-203ENST00000535479 KRTAP9-7A8MTY7 169 aa4.1□□□□□ -1.75
LPCAT3-203ENST00000535479 KRTAP9-2Q9BYQ4 174 aa4.02□□□□□ -1.77
LPCAT3-203ENST00000535479 KRTAP19-4Q3LI73 84 aa4□□□□□ -1.77
LPCAT3-203ENST00000535479 LCE3DQ9BYE3 92 aa3.95□□□□□ -1.78
LPCAT3-203ENST00000535479 PRM1P04553 51 aa3.95□□□□□ -1.78
LPCAT3-203ENST00000535479 KRTAP5-5Q701N2 237 aaPredicted RBP3.89□□□□□ -1.79
LPCAT3-203ENST00000535479 LCE3EQ5T5B0 92 aa3.86□□□□□ -1.79
LPCAT3-203ENST00000535479 LCE1AQ5T7P2 110 aa3.86□□□□□ -1.79
LPCAT3-203ENST00000535479 SPRR2EP22531 72 aa3.86□□□□□ -1.79
LPCAT3-203ENST00000535479 SPRR2BP35325 72 aa3.86□□□□□ -1.79
LPCAT3-203ENST00000535479 SPRR2AP35326 72 aa3.86□□□□□ -1.79
LPCAT3-203ENST00000535479 MT1AP04731 61 aa3.83□□□□□ -1.8
LPCAT3-203ENST00000535479 KRTAP9-6A0A140TA67 174 aa3.76□□□□□ -1.81
LPCAT3-203ENST00000535479 KRTAP6-2Q3LI66 62 aa3.75□□□□□ -1.81
LPCAT3-203ENST00000535479 KRTAP2-2Q9BYT5 123 aa3.73□□□□□ -1.81
LPCAT3-203ENST00000535479 SPRR2DP22532 72 aa3.64□□□□□ -1.83
LPCAT3-203ENST00000535479 KRTAP9-4Q9BYQ2 154 aa3.63□□□□□ -1.83
LPCAT3-203ENST00000535479 KRTAP6-3Q3LI67 103 aa3.58□□□□□ -1.84
LPCAT3-203ENST00000535479 KRTAP5-9P26371 169 aa3.57□□□□□ -1.84
LPCAT3-203ENST00000535479 LCE4AQ5TA78 99 aa3.54□□□□□ -1.84
LPCAT3-203ENST00000535479 MT4P47944 62 aa3.47□□□□□ -1.85
LPCAT3-203ENST00000535479 MT3P25713 68 aa3.45□□□□□ -1.86
LPCAT3-203ENST00000535479 LCE1EQ5T753 118 aa3.44□□□□□ -1.86
LPCAT3-203ENST00000535479 KRTAP4-6Q9BYQ5 205 aa3.44□□□□□ -1.86
LPCAT3-203ENST00000535479 KRTAP9-9Q9BYP9 154 aa3.39□□□□□ -1.87
LPCAT3-203ENST00000535479 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.33□□□□□ -1.88
LPCAT3-203ENST00000535479 HMCN1Q96RW7 5635 aa3.32□□□□□ -1.88
LPCAT3-203ENST00000535479 NEBP20929 6669 aa3.3□□□□□ -1.88
LPCAT3-203ENST00000535479 LCE1DQ5T752 114 aa3.29□□□□□ -1.88
LPCAT3-203ENST00000535479 MUC5ACP98088 5654 aa3.25□□□□□ -1.89
LPCAT3-203ENST00000535479 LCE1FQ5T754 118 aa3.16□□□□□ -1.9
LPCAT3-203ENST00000535479 LCE1BQ5T7P3 118 aa3.15□□□□□ -1.9
LPCAT3-203ENST00000535479 KRTAP20-2Q3LI61 65 aa3.1□□□□□ -1.91
LPCAT3-203ENST00000535479 KRTAP4-11Q9BYQ6 195 aa3.1□□□□□ -1.91
LPCAT3-203ENST00000535479 KRTAP5-4Q6L8H1 288 aa3.09□□□□□ -1.91
LPCAT3-203ENST00000535479 MUC19Q7Z5P9 8384 aa3.08□□□□□ -1.92
LPCAT3-203ENST00000535479 KRTAP20-1Q3LI63 56 aa2.98□□□□□ -1.93
LPCAT3-203ENST00000535479 KRTAP5-2Q701N4 177 aa2.91□□□□□ -1.94
LPCAT3-203ENST00000535479 KRTAP5-3Q6L8H2 238 aa2.85□□□□□ -1.95
LPCAT3-203ENST00000535479 GPR98Q8WXG9 6306 aa2.82□□□□□ -1.96
LPCAT3-203ENST00000535479 KRTAP5-10Q6L8G5 202 aa2.82□□□□□ -1.96
LPCAT3-203ENST00000535479 KRTAP4-4Q9BYR3 166 aa2.79□□□□□ -1.96
LPCAT3-203ENST00000535479 MUC5BQ9HC84 5762 aaPredicted RBP2.74□□□□□ -1.97
LPCAT3-203ENST00000535479 KRTAP4-12Q9BQ66 201 aa2.69□□□□□ -1.98
LPCAT3-203ENST00000535479 KRTAP4-2Q9BYR5 136 aa2.69□□□□□ -1.98
LPCAT3-203ENST00000535479 AHNAK2Q8IVF2 5795 aa2.63□□□□□ -1.99
LPCAT3-203ENST00000535479 KRTAP5-1Q6L8H4 278 aa2.62□□□□□ -1.99
LPCAT3-203ENST00000535479 KRTAP21-2Q3LI59 83 aa2.56□□□□□ -2
LPCAT3-203ENST00000535479 LCE1CQ5T751 118 aa2.51□□□□□ -2.01
LPCAT3-203ENST00000535479 KRTAP5-8O75690 187 aa2.39□□□□□ -2.03
LPCAT3-203ENST00000535479 KRTAP5-7Q6L8G8 165 aa2.36□□□□□ -2.03
LPCAT3-203ENST00000535479 AHNAKQ09666 5890 aaKnown RBP2.35□□□□□ -2.03
LPCAT3-203ENST00000535479 KRTAP21-1Q3LI58 79 aa2.25□□□□□ -2.05
LPCAT3-203ENST00000535479 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.24□□□□□ -2.05
LPCAT3-203ENST00000535479 KRTAP5-11Q6L8G4 156 aa2.11□□□□□ -2.07
LPCAT3-203ENST00000535479 PHGR1C9JFL3 82 aa1.9□□□□□ -2.11
LPCAT3-203ENST00000535479 MUC16Q8WXI7 14507 aa1.36□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 11.6 ms