RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 KRTAP19-4Q3LI73 84 aa7.29□□□□□ -1.24
VPS28-209ENST00000528142 SPRR2FQ96RM1 72 aa7.22□□□□□ -1.25
VPS28-209ENST00000528142 KRTAP5-9P26371 169 aa7.21□□□□□ -1.26
VPS28-209ENST00000528142 MUC12Q9UKN1 5478 aa7.2□□□□□ -1.26
VPS28-209ENST00000528142 KRTAP4-7Q9BYR0 210 aa7.18□□□□□ -1.26
VPS28-209ENST00000528142 KRTAP6-3Q3LI67 103 aa7.13□□□□□ -1.27
VPS28-209ENST00000528142 KRTAP19-3Q7Z4W3 81 aa7.11□□□□□ -1.27
VPS28-209ENST00000528142 KRTAP9-7A8MTY7 169 aa7.06□□□□□ -1.28
VPS28-209ENST00000528142 MT1GP13640 62 aa7.05□□□□□ -1.28
VPS28-209ENST00000528142 KRTAP9-6A8MVA2 160 aa7.04□□□□□ -1.28
VPS28-209ENST00000528142 MT1MQ8N339 61 aa7□□□□□ -1.29
VPS28-209ENST00000528142 MDN1Q9NU22 5596 aa6.99□□□□□ -1.29
VPS28-209ENST00000528142 LCE1AQ5T7P2 110 aa6.97□□□□□ -1.29
VPS28-209ENST00000528142 LCE5AQ5TCM9 118 aa6.97□□□□□ -1.29
VPS28-209ENST00000528142 H3BS24 57 aa6.94□□□□□ -1.3
VPS28-209ENST00000528142 KRTAP4-3Q9BYR4 195 aa6.92□□□□□ -1.3
VPS28-209ENST00000528142 SPRR2EP22531 72 aa6.88□□□□□ -1.31
VPS28-209ENST00000528142 SPRR2BP35325 72 aa6.88□□□□□ -1.31
VPS28-209ENST00000528142 SPRR2AP35326 72 aa6.88□□□□□ -1.31
VPS28-209ENST00000528142 LOC100996750A0A140TA64 210 aa6.73□□□□□ -1.33
VPS28-209ENST00000528142 NEBP20929 6669 aa6.68□□□□□ -1.34
VPS28-209ENST00000528142 SPRR2DP22532 72 aa6.62□□□□□ -1.35
VPS28-209ENST00000528142 KRTAP2-3P0C7H8 128 aa6.59□□□□□ -1.35
VPS28-209ENST00000528142 KRTAP2-4Q9BYR9 128 aa6.59□□□□□ -1.35
VPS28-209ENST00000528142 KRTAP2-1Q9BYU5 128 aa6.59□□□□□ -1.35
VPS28-209ENST00000528142 DSTQ03001 7570 aaKnown RBP6.59□□□□□ -1.36
VPS28-209ENST00000528142 A0A0A0MQY5 61 aa6.57□□□□□ -1.36
VPS28-209ENST00000528142 LCE3BQ5TA77 95 aa6.39□□□□□ -1.39
VPS28-209ENST00000528142 KRTAP5-5Q701N2 237 aaPredicted RBP6.31□□□□□ -1.4
VPS28-209ENST00000528142 MT1AP04731 61 aa6.22□□□□□ -1.41
VPS28-209ENST00000528142 KRTAP6-1Q3LI64 71 aa6.2□□□□□ -1.42
VPS28-209ENST00000528142 KRTAP20-1Q3LI63 56 aa6.19□□□□□ -1.42
VPS28-209ENST00000528142 INE1O15225 51 aa6.13□□□□□ -1.43
VPS28-209ENST00000528142 KRTAP2-2Q9BYT5 123 aa6.09□□□□□ -1.43
VPS28-209ENST00000528142 KRTAP5-4Q6L8H1 288 aa6.01□□□□□ -1.45
VPS28-209ENST00000528142 KRTAP9-4Q9BYQ2 154 aa5.9□□□□□ -1.46
VPS28-209ENST00000528142 SYNE1Q8NF91 8797 aaKnown RBP5.9□□□□□ -1.46
VPS28-209ENST00000528142 LCE4AQ5TA78 99 aa5.84□□□□□ -1.47
VPS28-209ENST00000528142 KRTAP4-9Q9BYQ8 210 aa5.82□□□□□ -1.48
VPS28-209ENST00000528142 MT4P47944 62 aa5.79□□□□□ -1.48
VPS28-209ENST00000528142 KRTAP4-6Q9BYQ5 205 aa5.79□□□□□ -1.48
VPS28-209ENST00000528142 KRTAP12-4P60329 112 aa5.74□□□□□ -1.49
VPS28-209ENST00000528142 LCE1DQ5T752 114 aa5.74□□□□□ -1.49
VPS28-209ENST00000528142 KRTAP6-2Q3LI66 62 aa5.65□□□□□ -1.5
VPS28-209ENST00000528142 HMCN1Q96RW7 5635 aa5.64□□□□□ -1.51
VPS28-209ENST00000528142 KRTAP20-2Q3LI61 65 aa5.62□□□□□ -1.51
VPS28-209ENST00000528142 MT3P25713 68 aa5.61□□□□□ -1.51
VPS28-209ENST00000528142 LCE3DQ9BYE3 92 aa5.56□□□□□ -1.52
VPS28-209ENST00000528142 KRTAP5-3Q6L8H2 238 aa5.45□□□□□ -1.54
VPS28-209ENST00000528142 LCE3EQ5T5B0 92 aa5.44□□□□□ -1.54
VPS28-209ENST00000528142 KRTAP5-2Q701N4 177 aa5.42□□□□□ -1.54
VPS28-209ENST00000528142 GPR98Q8WXG9 6306 aa5.28□□□□□ -1.56
VPS28-209ENST00000528142 OBSCNQ5VST9 7968 aa5.11□□□□□ -1.59
VPS28-209ENST00000528142 AHNAK2Q8IVF2 5795 aa5.06□□□□□ -1.6
VPS28-209ENST00000528142 KRTAP4-11Q9BYQ6 195 aa4.9□□□□□ -1.63
VPS28-209ENST00000528142 PRM1P04553 51 aa4.86□□□□□ -1.63
VPS28-209ENST00000528142 KRTAP5-10Q6L8G5 202 aa4.86□□□□□ -1.63
VPS28-209ENST00000528142 LCE1EQ5T753 118 aa4.82□□□□□ -1.64
VPS28-209ENST00000528142 KRTAP5-8O75690 187 aa4.75□□□□□ -1.65
VPS28-209ENST00000528142 KRTAP5-1Q6L8H4 278 aa4.74□□□□□ -1.65
VPS28-209ENST00000528142 KRTAP5-7Q6L8G8 165 aa4.67□□□□□ -1.66
VPS28-209ENST00000528142 LCE1BQ5T7P3 118 aa4.53□□□□□ -1.68
VPS28-209ENST00000528142 KRTAP4-2Q9BYR5 136 aa4.52□□□□□ -1.69
VPS28-209ENST00000528142 MUC5ACP98088 5654 aa4.52□□□□□ -1.69
VPS28-209ENST00000528142 LCE1CQ5T751 118 aa4.51□□□□□ -1.69
VPS28-209ENST00000528142 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.24□□□□□ -1.73
VPS28-209ENST00000528142 KRTAP9-9Q9BYP9 154 aa4.22□□□□□ -1.73
VPS28-209ENST00000528142 MUC5BQ9HC84 5762 aaPredicted RBP4.06□□□□□ -1.76
VPS28-209ENST00000528142 KRTAP21-2Q3LI59 83 aa4.06□□□□□ -1.76
VPS28-209ENST00000528142 AHNAKQ09666 5890 aaKnown RBP4.05□□□□□ -1.76
VPS28-209ENST00000528142 KRTAP5-11Q6L8G4 156 aa3.95□□□□□ -1.78
VPS28-209ENST00000528142 KRTAP4-12Q9BQ66 201 aa3.82□□□□□ -1.8
VPS28-209ENST00000528142 KRTAP4-4Q9BYR3 166 aa3.59□□□□□ -1.83
VPS28-209ENST00000528142 LCE1FQ5T754 118 aa3.53□□□□□ -1.84
VPS28-209ENST00000528142 PHGR1C9JFL3 82 aa3.4□□□□□ -1.87
VPS28-209ENST00000528142 MUC19Q7Z5P9 8384 aa3.06□□□□□ -1.92
VPS28-209ENST00000528142 KRTAP21-1Q3LI58 79 aa3.03□□□□□ -1.93
VPS28-209ENST00000528142 MUC16Q8WXI7 14507 aa2.2□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 10.7 ms