RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 KRTAP12-3P60328 96 aa1.91□□□□□ -2.1
CD44-220ENST00000525688 FSIP2Q5CZC0 6907 aa1.91□□□□□ -2.1
CD44-220ENST00000525688 KRTAP12-4P60329 112 aa1.86□□□□□ -2.11
CD44-220ENST00000525688 KRTAP4-1Q9BYQ7 146 aa1.86□□□□□ -2.11
CD44-220ENST00000525688 C9orf92A6NGG3 77 aa1.85□□□□□ -2.11
CD44-220ENST00000525688 TP53AIP1Q9HCN2 124 aa1.84□□□□□ -2.11
CD44-220ENST00000525688 CRIPTQ9P021 101 aa1.84□□□□□ -2.11
CD44-220ENST00000525688 KRTAP19-2Q3LHN2 52 aa1.82□□□□□ -2.12
CD44-220ENST00000525688 K7EQZ3 153 aa1.81□□□□□ -2.12
CD44-220ENST00000525688 MRPL34Q9BQ48 92 aaKnown RBP1.8□□□□□ -2.12
CD44-220ENST00000525688 FLGP20930 4061 aaPredicted RBP1.79□□□□□ -2.12
CD44-220ENST00000525688 MT1HP80294 61 aa1.78□□□□□ -2.12
CD44-220ENST00000525688 COX6B2Q6YFQ2 88 aa1.77□□□□□ -2.13
CD44-220ENST00000525688 KRTAP5-7Q6L8G8 165 aa1.75□□□□□ -2.13
CD44-220ENST00000525688 C10orf95Q9H7T3 257 aa1.75□□□□□ -2.13
CD44-220ENST00000525688 MMP24-AS1A0A0U1RRL7 71 aa1.74□□□□□ -2.13
CD44-220ENST00000525688 USH2AO75445 5202 aa1.71□□□□□ -2.14
CD44-220ENST00000525688 M0R2T5 61 aa1.71□□□□□ -2.14
CD44-220ENST00000525688 WFDC13Q8IUB5 93 aa1.7□□□□□ -2.14
CD44-220ENST00000525688 SSPOA2VEC9 5147 aa1.7□□□□□ -2.14
CD44-220ENST00000525688 H0YAA0 97 aa1.69□□□□□ -2.14
CD44-220ENST00000525688 KRTAP5-8O75690 187 aa1.67□□□□□ -2.14
CD44-220ENST00000525688 MT2AP02795 61 aa1.67□□□□□ -2.14
CD44-220ENST00000525688 MT1FP04733 61 aa1.66□□□□□ -2.14
CD44-220ENST00000525688 H1FX-AS1Q4G0G2 97 aa1.65□□□□□ -2.15
CD44-220ENST00000525688 SYNE2Q8WXH0 6885 aaKnown RBP1.64□□□□□ -2.15
CD44-220ENST00000525688 MUC19Q7Z5P9 8384 aa1.64□□□□□ -2.15
CD44-220ENST00000525688 FCGBPQ9Y6R7 5405 aaPredicted RBP1.63□□□□□ -2.15
CD44-220ENST00000525688 A0A0D9SG42 100 aa1.63□□□□□ -2.15
CD44-220ENST00000525688 KRTAP20-1Q3LI63 56 aa1.63□□□□□ -2.15
CD44-220ENST00000525688 GPR98Q8WXG9 6306 aa1.6□□□□□ -2.15
CD44-220ENST00000525688 S4R3F8 94 aa1.59□□□□□ -2.15
CD44-220ENST00000525688 MACF1Q9UPN3 7388 aaKnown RBP1.58□□□□□ -2.16
CD44-220ENST00000525688 KRTAP19-6Q3LI70 58 aa1.56□□□□□ -2.16
CD44-220ENST00000525688 SPRR2GQ9BYE4 73 aa1.55□□□□□ -2.16
CD44-220ENST00000525688 NEBP20929 6669 aa1.55□□□□□ -2.16
CD44-220ENST00000525688 KRTAP19-8Q3LI54 63 aa1.54□□□□□ -2.16
CD44-220ENST00000525688 MT1BP07438 61 aa1.53□□□□□ -2.16
CD44-220ENST00000525688 KRTAP2-3P0C7H8 128 aa1.49□□□□□ -2.17
CD44-220ENST00000525688 KRTAP2-4Q9BYR9 128 aa1.49□□□□□ -2.17
CD44-220ENST00000525688 MUC12Q9UKN1 5478 aa1.48□□□□□ -2.17
CD44-220ENST00000525688 MDN1Q9NU22 5596 aa1.47□□□□□ -2.17
CD44-220ENST00000525688 KMT2DO14686 5537 aa1.47□□□□□ -2.17
CD44-220ENST00000525688 M0QZ58 72 aa1.45□□□□□ -2.18
CD44-220ENST00000525688 MT1XP80297 61 aa1.44□□□□□ -2.18
CD44-220ENST00000525688 KRTAP21-2Q3LI59 83 aa1.44□□□□□ -2.18
CD44-220ENST00000525688 KRTAP2-1Q9BYU5 128 aa1.42□□□□□ -2.18
CD44-220ENST00000525688 HMCN1Q96RW7 5635 aa1.38□□□□□ -2.19
CD44-220ENST00000525688 KRTAP8-1Q8IUC2 63 aa1.36□□□□□ -2.19
CD44-220ENST00000525688 AHNAK2Q8IVF2 5795 aa1.36□□□□□ -2.19
CD44-220ENST00000525688 SPRR2FQ96RM1 72 aa1.36□□□□□ -2.19
CD44-220ENST00000525688 SPRR2EP22531 72 aa1.32□□□□□ -2.2
CD44-220ENST00000525688 SPRR2BP35325 72 aa1.32□□□□□ -2.2
CD44-220ENST00000525688 SPRR2AP35326 72 aa1.32□□□□□ -2.2
CD44-220ENST00000525688 KRTAP19-7Q3SYF9 63 aa1.29□□□□□ -2.2
CD44-220ENST00000525688 SPRR2DP22532 72 aa1.28□□□□□ -2.2
CD44-220ENST00000525688 KRTAP5-10Q6L8G5 202 aa1.28□□□□□ -2.2
CD44-220ENST00000525688 MT1EP04732 61 aa1.27□□□□□ -2.21
CD44-220ENST00000525688 DSTQ03001 7570 aaKnown RBP1.27□□□□□ -2.21
CD44-220ENST00000525688 AHNAKQ09666 5890 aaKnown RBP1.27□□□□□ -2.21
CD44-220ENST00000525688 TNP1P09430 55 aa1.26□□□□□ -2.21
CD44-220ENST00000525688 KRTAP19-5Q3LI72 72 aa1.26□□□□□ -2.21
CD44-220ENST00000525688 KRTAP19-3Q7Z4W3 81 aa1.25□□□□□ -2.21
CD44-220ENST00000525688 MT1GP13640 62 aa1.23□□□□□ -2.21
CD44-220ENST00000525688 MT1LQ93083 61 aa1.22□□□□□ -2.21
CD44-220ENST00000525688 MT1MQ8N339 61 aa1.21□□□□□ -2.22
CD44-220ENST00000525688 MUC5BQ9HC84 5762 aaPredicted RBP1.2□□□□□ -2.22
CD44-220ENST00000525688 MT4P47944 62 aa1.17□□□□□ -2.22
CD44-220ENST00000525688 SYNE1Q8NF91 8797 aaKnown RBP1.1□□□□□ -2.23
CD44-220ENST00000525688 KRTAP20-2Q3LI61 65 aa1.07□□□□□ -2.24
CD44-220ENST00000525688 MUC5ACP98088 5654 aa1.07□□□□□ -2.24
CD44-220ENST00000525688 MT1AP04731 61 aa1.04□□□□□ -2.24
CD44-220ENST00000525688 PRM1P04553 51 aa1.03□□□□□ -2.24
CD44-220ENST00000525688 KRTAP6-1Q3LI64 71 aa1.03□□□□□ -2.24
CD44-220ENST00000525688 KRTAP6-2Q3LI66 62 aa0.98□□□□□ -2.25
CD44-220ENST00000525688 KRTAP21-1Q3LI58 79 aa0.86□□□□□ -2.27
CD44-220ENST00000525688 MUC16Q8WXI7 14507 aa0.83□□□□□ -2.28
CD44-220ENST00000525688 PHGR1C9JFL3 82 aa0.78□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 79.5 ms