RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 MT3P25713 68 aa5.14□□□□□ -1.59
PCDHA3-201ENST00000522353 KRTAP9-6A0A140TA67 174 aa5.1□□□□□ -1.59
PCDHA3-201ENST00000522353 MT4P47944 62 aa5.1□□□□□ -1.59
PCDHA3-201ENST00000522353 LCE2AQ5TA79 106 aaPredicted RBP5.09□□□□□ -1.59
PCDHA3-201ENST00000522353 UBR4Q5T4S7 5183 aa5.08□□□□□ -1.6
PCDHA3-201ENST00000522353 FLGP20930 4061 aaPredicted RBP5.07□□□□□ -1.6
PCDHA3-201ENST00000522353 RNF213Q63HN8 5207 aa4.96□□□□□ -1.62
PCDHA3-201ENST00000522353 FSIP2Q5CZC0 6907 aa4.93□□□□□ -1.62
PCDHA3-201ENST00000522353 FAT4Q6V0I7 4981 aa4.91□□□□□ -1.62
PCDHA3-201ENST00000522353 KRTAP4-3Q9BYR4 195 aa4.86□□□□□ -1.63
PCDHA3-201ENST00000522353 LOC100996750A0A140TA64 210 aa4.86□□□□□ -1.63
PCDHA3-201ENST00000522353 LCE1BQ5T7P3 118 aa4.85□□□□□ -1.63
PCDHA3-201ENST00000522353 KRTAP20-1Q3LI63 56 aa4.85□□□□□ -1.63
PCDHA3-201ENST00000522353 LCE1DQ5T752 114 aa4.85□□□□□ -1.63
PCDHA3-201ENST00000522353 KRTAP19-7Q3SYF9 63 aa4.84□□□□□ -1.63
PCDHA3-201ENST00000522353 KRTAP9-7A8MTY7 169 aa4.82□□□□□ -1.64
PCDHA3-201ENST00000522353 MT1AP04731 61 aa4.82□□□□□ -1.64
PCDHA3-201ENST00000522353 LCE1AQ5T7P2 110 aa4.79□□□□□ -1.64
PCDHA3-201ENST00000522353 MUC2Q02817 5179 aa4.78□□□□□ -1.64
PCDHA3-201ENST00000522353 KRTAP6-3Q3LI67 103 aa4.78□□□□□ -1.64
PCDHA3-201ENST00000522353 PRM1P04553 51 aa4.76□□□□□ -1.65
PCDHA3-201ENST00000522353 SYNE2Q8WXH0 6885 aaKnown RBP4.74□□□□□ -1.65
PCDHA3-201ENST00000522353 KRTAP2-3P0C7H8 128 aa4.74□□□□□ -1.65
PCDHA3-201ENST00000522353 KRTAP2-4Q9BYR9 128 aa4.74□□□□□ -1.65
PCDHA3-201ENST00000522353 KRTAP2-1Q9BYU5 128 aa4.74□□□□□ -1.65
PCDHA3-201ENST00000522353 HMCN2Q8NDA2 5059 aa4.73□□□□□ -1.65
PCDHA3-201ENST00000522353 OBSCNQ5VST9 7968 aa4.61□□□□□ -1.67
PCDHA3-201ENST00000522353 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.61□□□□□ -1.67
PCDHA3-201ENST00000522353 LCE5AQ5TCM9 118 aa4.59□□□□□ -1.68
PCDHA3-201ENST00000522353 LCE4AQ5TA78 99 aa4.56□□□□□ -1.68
PCDHA3-201ENST00000522353 KRTAP2-2Q9BYT5 123 aa4.53□□□□□ -1.68
PCDHA3-201ENST00000522353 KRTAP9-6A8MVA2 160 aa4.51□□□□□ -1.69
PCDHA3-201ENST00000522353 KRTAP4-9Q9BYQ8 210 aa4.46□□□□□ -1.69
PCDHA3-201ENST00000522353 KRTAP6-1Q3LI64 71 aa4.42□□□□□ -1.7
PCDHA3-201ENST00000522353 KRTAP6-2Q3LI66 62 aa4.42□□□□□ -1.7
PCDHA3-201ENST00000522353 KRTAP9-4Q9BYQ2 154 aa4.41□□□□□ -1.7
PCDHA3-201ENST00000522353 USH2AO75445 5202 aa4.2□□□□□ -1.74
PCDHA3-201ENST00000522353 LCE1CQ5T751 118 aa4.17□□□□□ -1.74
PCDHA3-201ENST00000522353 LCE1EQ5T753 118 aa4.17□□□□□ -1.74
PCDHA3-201ENST00000522353 LCE1FQ5T754 118 aa4.17□□□□□ -1.74
PCDHA3-201ENST00000522353 MACF1Q9UPN3 7388 aaKnown RBP4.17□□□□□ -1.74
PCDHA3-201ENST00000522353 DSTQ03001 7570 aaKnown RBP4.15□□□□□ -1.74
PCDHA3-201ENST00000522353 FCGBPQ9Y6R7 5405 aaPredicted RBP4.11□□□□□ -1.75
PCDHA3-201ENST00000522353 NEBP20929 6669 aa4.02□□□□□ -1.77
PCDHA3-201ENST00000522353 KMT2DO14686 5537 aa4□□□□□ -1.77
PCDHA3-201ENST00000522353 KRTAP9-9Q9BYP9 154 aa4□□□□□ -1.77
PCDHA3-201ENST00000522353 KRTAP5-9P26371 169 aa3.99□□□□□ -1.77
PCDHA3-201ENST00000522353 GPR98Q8WXG9 6306 aa3.94□□□□□ -1.78
PCDHA3-201ENST00000522353 MDN1Q9NU22 5596 aa3.84□□□□□ -1.79
PCDHA3-201ENST00000522353 SSPOA2VEC9 5147 aa3.82□□□□□ -1.8
PCDHA3-201ENST00000522353 MUC19Q7Z5P9 8384 aa3.76□□□□□ -1.81
PCDHA3-201ENST00000522353 KRTAP20-2Q3LI61 65 aa3.74□□□□□ -1.81
PCDHA3-201ENST00000522353 KRTAP4-6Q9BYQ5 205 aa3.74□□□□□ -1.81
PCDHA3-201ENST00000522353 MUC12Q9UKN1 5478 aa3.67□□□□□ -1.82
PCDHA3-201ENST00000522353 KRTAP5-4Q6L8H1 288 aa3.5□□□□□ -1.85
PCDHA3-201ENST00000522353 KRTAP4-11Q9BYQ6 195 aa3.48□□□□□ -1.85
PCDHA3-201ENST00000522353 KRTAP5-5Q701N2 237 aaPredicted RBP3.46□□□□□ -1.86
PCDHA3-201ENST00000522353 KRTAP4-12Q9BQ66 201 aa3.32□□□□□ -1.88
PCDHA3-201ENST00000522353 KRTAP4-2Q9BYR5 136 aa3.32□□□□□ -1.88
PCDHA3-201ENST00000522353 KRTAP4-4Q9BYR3 166 aa3.28□□□□□ -1.89
PCDHA3-201ENST00000522353 AHNAK2Q8IVF2 5795 aa3.14□□□□□ -1.91
PCDHA3-201ENST00000522353 KRTAP5-3Q6L8H2 238 aa3.13□□□□□ -1.91
PCDHA3-201ENST00000522353 MUC5ACP98088 5654 aa3.1□□□□□ -1.91
PCDHA3-201ENST00000522353 HMCN1Q96RW7 5635 aa3.03□□□□□ -1.92
PCDHA3-201ENST00000522353 KRTAP5-8O75690 187 aa2.83□□□□□ -1.96
PCDHA3-201ENST00000522353 KRTAP5-10Q6L8G5 202 aa2.7□□□□□ -1.98
PCDHA3-201ENST00000522353 KRTAP5-2Q701N4 177 aa2.67□□□□□ -1.98
PCDHA3-201ENST00000522353 PHGR1C9JFL3 82 aa2.6□□□□□ -1.99
PCDHA3-201ENST00000522353 AHNAKQ09666 5890 aaKnown RBP2.57□□□□□ -2
PCDHA3-201ENST00000522353 MUC5BQ9HC84 5762 aaPredicted RBP2.55□□□□□ -2
PCDHA3-201ENST00000522353 KRTAP5-11Q6L8G4 156 aa2.47□□□□□ -2.01
PCDHA3-201ENST00000522353 KRTAP5-1Q6L8H4 278 aa2.34□□□□□ -2.03
PCDHA3-201ENST00000522353 KRTAP21-2Q3LI59 83 aa2.28□□□□□ -2.04
PCDHA3-201ENST00000522353 KRTAP21-1Q3LI58 79 aa2.23□□□□□ -2.05
PCDHA3-201ENST00000522353 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.22□□□□□ -2.05
PCDHA3-201ENST00000522353 KRTAP5-7Q6L8G8 165 aa2.11□□□□□ -2.07
PCDHA3-201ENST00000522353 MUC16Q8WXI7 14507 aa1.52□□□□□ -2.17
Retrieved 77 of 20,778 RNA–protein pairs in 111.3 ms