RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 KRTAP8-1Q8IUC2 63 aa3.32□□□□□ -1.88
LIMCH1-209ENST00000509277 KRTAP12-3P60328 96 aa3.31□□□□□ -1.88
LIMCH1-209ENST00000509277 LCE4AQ5TA78 99 aa3.29□□□□□ -1.88
LIMCH1-209ENST00000509277 KRTAP9-9Q9BYP9 154 aa3.28□□□□□ -1.88
LIMCH1-209ENST00000509277 KRTAP9-4Q9BYQ2 154 aa3.28□□□□□ -1.88
LIMCH1-209ENST00000509277 MUC12Q9UKN1 5478 aa3.28□□□□□ -1.88
LIMCH1-209ENST00000509277 SYNE1Q8NF91 8797 aaKnown RBP3.26□□□□□ -1.89
LIMCH1-209ENST00000509277 SPRR2FQ96RM1 72 aa3.26□□□□□ -1.89
LIMCH1-209ENST00000509277 KRTAP19-5Q3LI72 72 aa3.24□□□□□ -1.89
LIMCH1-209ENST00000509277 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.21□□□□□ -1.9
LIMCH1-209ENST00000509277 DSTQ03001 7570 aaKnown RBP3.19□□□□□ -1.9
LIMCH1-209ENST00000509277 MDN1Q9NU22 5596 aa3.15□□□□□ -1.91
LIMCH1-209ENST00000509277 KRTAP19-7Q3SYF9 63 aa3.12□□□□□ -1.91
LIMCH1-209ENST00000509277 SPRR2EP22531 72 aa3.09□□□□□ -1.91
LIMCH1-209ENST00000509277 SPRR2BP35325 72 aa3.09□□□□□ -1.91
LIMCH1-209ENST00000509277 SPRR2AP35326 72 aa3.09□□□□□ -1.91
LIMCH1-209ENST00000509277 KRTAP4-7Q9BYR0 210 aa3.09□□□□□ -1.92
LIMCH1-209ENST00000509277 LCE3BQ5TA77 95 aa3.08□□□□□ -1.92
LIMCH1-209ENST00000509277 LCE5AQ5TCM9 118 aa3.08□□□□□ -1.92
LIMCH1-209ENST00000509277 MT1EP04732 61 aa3.07□□□□□ -1.92
LIMCH1-209ENST00000509277 KRTAP4-3Q9BYR4 195 aa3.02□□□□□ -1.93
LIMCH1-209ENST00000509277 LCE3CQ5T5A8 94 aa3.01□□□□□ -1.93
LIMCH1-209ENST00000509277 KRTAP6-3Q3LI67 103 aa3.01□□□□□ -1.93
LIMCH1-209ENST00000509277 MT1LQ93083 61 aa3.01□□□□□ -1.93
LIMCH1-209ENST00000509277 KRTAP19-3Q7Z4W3 81 aa2.99□□□□□ -1.93
LIMCH1-209ENST00000509277 LCE1AQ5T7P2 110 aa2.97□□□□□ -1.93
LIMCH1-209ENST00000509277 SPRR2DP22532 72 aa2.96□□□□□ -1.93
LIMCH1-209ENST00000509277 KRTAP9-6A8MVA2 160 aa2.96□□□□□ -1.94
LIMCH1-209ENST00000509277 KRTAP5-9P26371 169 aa2.95□□□□□ -1.94
LIMCH1-209ENST00000509277 LCE1DQ5T752 114 aa2.95□□□□□ -1.94
LIMCH1-209ENST00000509277 MT1GP13640 62 aa2.93□□□□□ -1.94
LIMCH1-209ENST00000509277 MT1MQ8N339 61 aa2.92□□□□□ -1.94
LIMCH1-209ENST00000509277 KRTAP12-4P60329 112 aa2.92□□□□□ -1.94
LIMCH1-209ENST00000509277 NEBP20929 6669 aa2.86□□□□□ -1.95
LIMCH1-209ENST00000509277 KRTAP4-9Q9BYQ8 210 aa2.85□□□□□ -1.95
LIMCH1-209ENST00000509277 KRTAP4-11Q9BYQ6 195 aa2.8□□□□□ -1.96
LIMCH1-209ENST00000509277 KRTAP20-1Q3LI63 56 aa2.74□□□□□ -1.97
LIMCH1-209ENST00000509277 KRTAP2-3P0C7H8 128 aa2.73□□□□□ -1.97
LIMCH1-209ENST00000509277 KRTAP2-4Q9BYR9 128 aa2.73□□□□□ -1.97
LIMCH1-209ENST00000509277 KRTAP2-1Q9BYU5 128 aa2.73□□□□□ -1.97
LIMCH1-209ENST00000509277 KRTAP4-2Q9BYR5 136 aa2.69□□□□□ -1.98
LIMCH1-209ENST00000509277 MT4P47944 62 aa2.69□□□□□ -1.98
LIMCH1-209ENST00000509277 KRTAP2-2Q9BYT5 123 aa2.64□□□□□ -1.99
LIMCH1-209ENST00000509277 MUC19Q7Z5P9 8384 aa2.64□□□□□ -1.99
LIMCH1-209ENST00000509277 PRM1P04553 51 aa2.63□□□□□ -1.99
LIMCH1-209ENST00000509277 MT3P25713 68 aa2.6□□□□□ -1.99
LIMCH1-209ENST00000509277 KRTAP6-1Q3LI64 71 aa2.59□□□□□ -1.99
LIMCH1-209ENST00000509277 LCE1EQ5T753 118 aa2.58□□□□□ -2
LIMCH1-209ENST00000509277 MT1AP04731 61 aa2.52□□□□□ -2.01
LIMCH1-209ENST00000509277 LCE3DQ9BYE3 92 aa2.51□□□□□ -2.01
LIMCH1-209ENST00000509277 KRTAP5-5Q701N2 237 aaPredicted RBP2.49□□□□□ -2.01
LIMCH1-209ENST00000509277 HMCN1Q96RW7 5635 aa2.49□□□□□ -2.01
LIMCH1-209ENST00000509277 LCE1FQ5T754 118 aa2.48□□□□□ -2.01
LIMCH1-209ENST00000509277 LCE3EQ5T5B0 92 aa2.46□□□□□ -2.02
LIMCH1-209ENST00000509277 KRTAP6-2Q3LI66 62 aa2.44□□□□□ -2.02
LIMCH1-209ENST00000509277 KRTAP5-4Q6L8H1 288 aa2.41□□□□□ -2.02
LIMCH1-209ENST00000509277 KRTAP20-2Q3LI61 65 aa2.39□□□□□ -2.03
LIMCH1-209ENST00000509277 KRTAP5-3Q6L8H2 238 aa2.28□□□□□ -2.04
LIMCH1-209ENST00000509277 GPR98Q8WXG9 6306 aa2.21□□□□□ -2.06
LIMCH1-209ENST00000509277 AHNAK2Q8IVF2 5795 aa2.18□□□□□ -2.06
LIMCH1-209ENST00000509277 KRTAP5-2Q701N4 177 aa2.15□□□□□ -2.07
LIMCH1-209ENST00000509277 LCE1BQ5T7P3 118 aa2.13□□□□□ -2.07
LIMCH1-209ENST00000509277 MUC5ACP98088 5654 aa2.1□□□□□ -2.07
LIMCH1-209ENST00000509277 KRTAP5-10Q6L8G5 202 aa2.02□□□□□ -2.09
LIMCH1-209ENST00000509277 KRTAP5-8O75690 187 aa1.98□□□□□ -2.09
LIMCH1-209ENST00000509277 KRTAP5-1Q6L8H4 278 aa1.94□□□□□ -2.1
LIMCH1-209ENST00000509277 MUC5BQ9HC84 5762 aaPredicted RBP1.93□□□□□ -2.1
LIMCH1-209ENST00000509277 KRTAP5-11Q6L8G4 156 aa1.91□□□□□ -2.1
LIMCH1-209ENST00000509277 KRTAP5-7Q6L8G8 165 aa1.83□□□□□ -2.12
LIMCH1-209ENST00000509277 LCE1CQ5T751 118 aa1.8□□□□□ -2.12
LIMCH1-209ENST00000509277 AHNAKQ09666 5890 aaKnown RBP1.79□□□□□ -2.12
LIMCH1-209ENST00000509277 KRTAP4-4Q9BYR3 166 aa1.74□□□□□ -2.13
LIMCH1-209ENST00000509277 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.72□□□□□ -2.13
LIMCH1-209ENST00000509277 KRTAP21-2Q3LI59 83 aa1.61□□□□□ -2.15
LIMCH1-209ENST00000509277 PHGR1C9JFL3 82 aa1.38□□□□□ -2.19
LIMCH1-209ENST00000509277 KRTAP21-1Q3LI58 79 aa1.36□□□□□ -2.19
LIMCH1-209ENST00000509277 MUC16Q8WXI7 14507 aa0.88□□□□□ -2.27
Retrieved 77 of 20,778 RNA–protein pairs in 103.2 ms