RNA–Protein interactions for RNA: ENST00000496205.1

CLK1-214, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 480 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-214ENST00000496205 H3BNG1 76 aa0.6□□□□□ -2.31
CLK1-214ENST00000496205 DEFB131AP59861 70 aa0.6□□□□□ -2.31
CLK1-214ENST00000496205 HMCN2Q8NDA2 5059 aa0.59□□□□□ -2.31
CLK1-214ENST00000496205 RPL39P5Q59GN2 51 aa0.59□□□□□ -2.31
CLK1-214ENST00000496205 CLPSL2Q6UWE3 100 aa0.59□□□□□ -2.31
CLK1-214ENST00000496205 DMBT1Q9UGM3 2413 aaPredicted RBP0.59□□□□□ -2.32
CLK1-214ENST00000496205 MUC2Q02817 5179 aa0.59□□□□□ -2.32
CLK1-214ENST00000496205 MUC17Q685J3 4493 aa0.58□□□□□ -2.32
CLK1-214ENST00000496205 LPAP08519 4548 aa0.58□□□□□ -2.32
CLK1-214ENST00000496205 H3BUX3 64 aa0.58□□□□□ -2.32
CLK1-214ENST00000496205 UBR4Q5T4S7 5183 aa0.57□□□□□ -2.32
CLK1-214ENST00000496205 RNF213Q63HN8 5207 aa0.56□□□□□ -2.32
CLK1-214ENST00000496205 M0QY20 66 aa0.56□□□□□ -2.32
CLK1-214ENST00000496205 DEFB135Q30KP9 77 aa0.56□□□□□ -2.32
CLK1-214ENST00000496205 RHPN1-AS1Q9BWJ2 59 aa0.56□□□□□ -2.32
CLK1-214ENST00000496205 NOP10Q9NPE3 64 aaKnown RBP0.56□□□□□ -2.32
CLK1-214ENST00000496205 LINC01556Q5JQF7 62 aa0.55□□□□□ -2.32
CLK1-214ENST00000496205 FAT4Q6V0I7 4981 aa0.54□□□□□ -2.32
CLK1-214ENST00000496205 MACF1Q9UPN3 7388 aaKnown RBP0.54□□□□□ -2.32
CLK1-214ENST00000496205 A0A096LPF7 62 aa0.54□□□□□ -2.32
CLK1-214ENST00000496205 M0R2T5 61 aa0.53□□□□□ -2.32
CLK1-214ENST00000496205 SPART-AS1P0CW21 52 aa0.53□□□□□ -2.32
CLK1-214ENST00000496205 DEFB136Q30KP8 78 aa0.53□□□□□ -2.32
CLK1-214ENST00000496205 RPS29P62273 56 aaKnown RBP0.52□□□□□ -2.33
CLK1-214ENST00000496205 PRM1P04553 51 aa0.51□□□□□ -2.33
CLK1-214ENST00000496205 AHNAKQ09666 5890 aaKnown RBP0.51□□□□□ -2.33
CLK1-214ENST00000496205 MUC5BQ9HC84 5762 aaPredicted RBP0.51□□□□□ -2.33
CLK1-214ENST00000496205 APELAP0DMC3 54 aa0.5□□□□□ -2.33
CLK1-214ENST00000496205 DEFB1P60022 68 aa0.5□□□□□ -2.33
CLK1-214ENST00000496205 MT1HL1P0DM35 61 aa0.49□□□□□ -2.33
CLK1-214ENST00000496205 KRTAP19-2Q3LHN2 52 aa0.49□□□□□ -2.33
CLK1-214ENST00000496205 KRTAP21-1Q3LI58 79 aa0.49□□□□□ -2.33
CLK1-214ENST00000496205 NEBP20929 6669 aa0.48□□□□□ -2.33
CLK1-214ENST00000496205 SYNE2Q8WXH0 6885 aaKnown RBP0.48□□□□□ -2.33
CLK1-214ENST00000496205 USH2AO75445 5202 aa0.48□□□□□ -2.33
CLK1-214ENST00000496205 SSPOA2VEC9 5147 aa0.47□□□□□ -2.33
CLK1-214ENST00000496205 DSTQ03001 7570 aaKnown RBP0.47□□□□□ -2.33
CLK1-214ENST00000496205 A0A096LNI7 61 aa0.46□□□□□ -2.34
CLK1-214ENST00000496205 M0QZ58 72 aa0.46□□□□□ -2.34
CLK1-214ENST00000496205 DEFB4AO15263 64 aa0.45□□□□□ -2.34
CLK1-214ENST00000496205 TNP1P09430 55 aa0.45□□□□□ -2.34
CLK1-214ENST00000496205 HTN1P15515 57 aa0.44□□□□□ -2.34
CLK1-214ENST00000496205 FSIP2Q5CZC0 6907 aa0.44□□□□□ -2.34
CLK1-214ENST00000496205 MUC12Q9UKN1 5478 aa0.44□□□□□ -2.34
CLK1-214ENST00000496205 MDN1Q9NU22 5596 aa0.43□□□□□ -2.34
CLK1-214ENST00000496205 KMT2DO14686 5537 aa0.42□□□□□ -2.34
CLK1-214ENST00000496205 C9orf92A6NGG3 77 aa0.42□□□□□ -2.34
CLK1-214ENST00000496205 HTN3P15516 51 aa0.42□□□□□ -2.34
CLK1-214ENST00000496205 SPRR2DP22532 72 aa0.42□□□□□ -2.34
CLK1-214ENST00000496205 SPRR2GQ9BYE4 73 aa0.41□□□□□ -2.34
CLK1-214ENST00000496205 PHGR1C9JFL3 82 aa0.4□□□□□ -2.35
CLK1-214ENST00000496205 KRTAP19-8Q3LI54 63 aa0.4□□□□□ -2.35
CLK1-214ENST00000496205 MT1HP80294 61 aa0.39□□□□□ -2.35
CLK1-214ENST00000496205 MUC5ACP98088 5654 aa0.38□□□□□ -2.35
CLK1-214ENST00000496205 SYNE1Q8NF91 8797 aaKnown RBP0.38□□□□□ -2.35
CLK1-214ENST00000496205 SMR3BP02814 79 aaPredicted RBP0.38□□□□□ -2.35
CLK1-214ENST00000496205 KRTAP20-1Q3LI63 56 aa0.38□□□□□ -2.35
CLK1-214ENST00000496205 KRTAP19-6Q3LI70 58 aa0.38□□□□□ -2.35
CLK1-214ENST00000496205 MT2AP02795 61 aa0.37□□□□□ -2.35
CLK1-214ENST00000496205 MT1FP04733 61 aa0.36□□□□□ -2.35
CLK1-214ENST00000496205 MT1BP07438 61 aa0.36□□□□□ -2.35
CLK1-214ENST00000496205 SPRR2BP35325 72 aa0.36□□□□□ -2.35
CLK1-214ENST00000496205 KRTAP6-2Q3LI66 62 aa0.36□□□□□ -2.35
CLK1-214ENST00000496205 MT1XP80297 61 aa0.35□□□□□ -2.35
CLK1-214ENST00000496205 KRTAP8-1Q8IUC2 63 aa0.34□□□□□ -2.36
CLK1-214ENST00000496205 KRTAP19-7Q3SYF9 63 aa0.33□□□□□ -2.36
CLK1-214ENST00000496205 MT1EP04732 61 aa0.31□□□□□ -2.36
CLK1-214ENST00000496205 MT1GP13640 62 aa0.31□□□□□ -2.36
CLK1-214ENST00000496205 KRTAP19-5Q3LI72 72 aa0.3□□□□□ -2.36
CLK1-214ENST00000496205 MT1LQ93083 61 aa0.3□□□□□ -2.36
CLK1-214ENST00000496205 MT1MQ8N339 61 aa0.29□□□□□ -2.36
CLK1-214ENST00000496205 MT1AP04731 61 aa0.28□□□□□ -2.36
CLK1-214ENST00000496205 SPRR2AP35326 72 aa0.28□□□□□ -2.36
CLK1-214ENST00000496205 SPRR2FQ96RM1 72 aa0.27□□□□□ -2.37
CLK1-214ENST00000496205 SPRR2EP22531 72 aa0.26□□□□□ -2.37
CLK1-214ENST00000496205 KRTAP20-2Q3LI61 65 aa0.24□□□□□ -2.37
CLK1-214ENST00000496205 KRTAP6-1Q3LI64 71 aa0.23□□□□□ -2.37
CLK1-214ENST00000496205 MT4P47944 62 aa0.15□□□□□ -2.39
Retrieved 78 of 20,778 RNA–protein pairs in 9.6 ms