RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 SNURFQ9Y675 71 aa3.07□□□□□ -1.92
CCDC88A-213ENST00000476903 A0A087WVE0 104 aa3.05□□□□□ -1.92
CCDC88A-213ENST00000476903 A0A1B0GU33 70 aa3.05□□□□□ -1.92
CCDC88A-213ENST00000476903 SPRR2GQ9BYE4 73 aa3.05□□□□□ -1.92
CCDC88A-213ENST00000476903 LINC01558Q9Y6Z2 57 aa3.05□□□□□ -1.92
CCDC88A-213ENST00000476903 KRTAP19-8Q3LI54 63 aa3.04□□□□□ -1.92
CCDC88A-213ENST00000476903 H0Y9P7 68 aa3.03□□□□□ -1.92
CCDC88A-213ENST00000476903 MT1BP07438 61 aa3.03□□□□□ -1.92
CCDC88A-213ENST00000476903 KRTAP6-3Q3LI67 103 aa3.03□□□□□ -1.92
CCDC88A-213ENST00000476903 P0C880 135 aa3.02□□□□□ -1.93
CCDC88A-213ENST00000476903 CRIPTQ9P021 101 aa3.02□□□□□ -1.93
CCDC88A-213ENST00000476903 A8MU10 97 aa3.01□□□□□ -1.93
CCDC88A-213ENST00000476903 UQCR11O14957 56 aa3□□□□□ -1.93
CCDC88A-213ENST00000476903 KRTAP25-1Q3LHN0 102 aa3□□□□□ -1.93
CCDC88A-213ENST00000476903 KRTAP20-1Q3LI63 56 aa3□□□□□ -1.93
CCDC88A-213ENST00000476903 LINC00208Q96KT6 92 aa3□□□□□ -1.93
CCDC88A-213ENST00000476903 H0YAA0 97 aa2.98□□□□□ -1.93
CCDC88A-213ENST00000476903 SPATA8Q6RVD6 105 aa2.93□□□□□ -1.94
CCDC88A-213ENST00000476903 MUC12Q9UKN1 5478 aa2.93□□□□□ -1.94
CCDC88A-213ENST00000476903 SPINT4Q6UDR6 99 aa2.91□□□□□ -1.94
CCDC88A-213ENST00000476903 PRO2289Q9P1D8 64 aa2.9□□□□□ -1.95
CCDC88A-213ENST00000476903 R4GN34 69 aa2.88□□□□□ -1.95
CCDC88A-213ENST00000476903 PLAC4Q8WY50 150 aa2.87□□□□□ -1.95
CCDC88A-213ENST00000476903 M0QZ58 72 aa2.85□□□□□ -1.95
CCDC88A-213ENST00000476903 MT1XP80297 61 aa2.85□□□□□ -1.95
CCDC88A-213ENST00000476903 GPR98Q8WXG9 6306 aa2.85□□□□□ -1.95
CCDC88A-213ENST00000476903 KMT2DO14686 5537 aa2.84□□□□□ -1.95
CCDC88A-213ENST00000476903 COA5Q86WW8 74 aa2.83□□□□□ -1.96
CCDC88A-213ENST00000476903 MDN1Q9NU22 5596 aa2.82□□□□□ -1.96
CCDC88A-213ENST00000476903 ACYP2P14621 99 aa2.82□□□□□ -1.96
CCDC88A-213ENST00000476903 KRTAP2-3P0C7H8 128 aa2.8□□□□□ -1.96
CCDC88A-213ENST00000476903 KRTAP2-4Q9BYR9 128 aa2.8□□□□□ -1.96
CCDC88A-213ENST00000476903 SPRR2FQ96RM1 72 aa2.79□□□□□ -1.96
CCDC88A-213ENST00000476903 A0A1B0GU69 56 aa2.78□□□□□ -1.96
CCDC88A-213ENST00000476903 KRTAP8-1Q8IUC2 63 aa2.78□□□□□ -1.96
CCDC88A-213ENST00000476903 SPRR2EP22531 72 aa2.77□□□□□ -1.97
CCDC88A-213ENST00000476903 SPRR2BP35325 72 aa2.77□□□□□ -1.97
CCDC88A-213ENST00000476903 SPRR2AP35326 72 aa2.77□□□□□ -1.97
CCDC88A-213ENST00000476903 MUC19Q7Z5P9 8384 aa2.75□□□□□ -1.97
CCDC88A-213ENST00000476903 INE1O15225 51 aa2.73□□□□□ -1.97
CCDC88A-213ENST00000476903 KRTAP5-7Q6L8G8 165 aa2.69□□□□□ -1.98
CCDC88A-213ENST00000476903 KRTAP2-1Q9BYU5 128 aa2.68□□□□□ -1.98
CCDC88A-213ENST00000476903 SPRR2DP22532 72 aa2.67□□□□□ -1.98
CCDC88A-213ENST00000476903 KRTAP13-4Q3LI77 160 aa2.65□□□□□ -1.99
CCDC88A-213ENST00000476903 LCE3DQ9BYE3 92 aa2.64□□□□□ -1.99
CCDC88A-213ENST00000476903 PP632Q6XCG6 107 aa2.62□□□□□ -1.99
CCDC88A-213ENST00000476903 A0A0D9SG42 100 aa2.59□□□□□ -1.99
CCDC88A-213ENST00000476903 KRTAP19-7Q3SYF9 63 aa2.54□□□□□ -2
CCDC88A-213ENST00000476903 KRTAP12-1P59990 96 aa2.53□□□□□ -2
CCDC88A-213ENST00000476903 DSTQ03001 7570 aaKnown RBP2.53□□□□□ -2
CCDC88A-213ENST00000476903 MT1EP04732 61 aa2.52□□□□□ -2.01
CCDC88A-213ENST00000476903 KRTAP19-3Q7Z4W3 81 aa2.52□□□□□ -2.01
CCDC88A-213ENST00000476903 KRTAP19-5Q3LI72 72 aa2.48□□□□□ -2.01
CCDC88A-213ENST00000476903 MT1GP13640 62 aa2.45□□□□□ -2.02
CCDC88A-213ENST00000476903 TNP1P09430 55 aa2.43□□□□□ -2.02
CCDC88A-213ENST00000476903 C10orf95Q9H7T3 257 aa2.42□□□□□ -2.02
CCDC88A-213ENST00000476903 MT1LQ93083 61 aa2.41□□□□□ -2.02
CCDC88A-213ENST00000476903 MT1MQ8N339 61 aa2.4□□□□□ -2.03
CCDC88A-213ENST00000476903 KRTAP21-2Q3LI59 83 aa2.39□□□□□ -2.03
CCDC88A-213ENST00000476903 KRTAP5-10Q6L8G5 202 aa2.39□□□□□ -2.03
CCDC88A-213ENST00000476903 AHNAK2Q8IVF2 5795 aa2.36□□□□□ -2.03
CCDC88A-213ENST00000476903 SPRR5A0A1B0GTR4 108 aa2.36□□□□□ -2.03
CCDC88A-213ENST00000476903 HMCN1Q96RW7 5635 aa2.34□□□□□ -2.03
CCDC88A-213ENST00000476903 MT4P47944 62 aa2.33□□□□□ -2.04
CCDC88A-213ENST00000476903 KRTAP12-3P60328 96 aa2.32□□□□□ -2.04
CCDC88A-213ENST00000476903 KRTAP20-2Q3LI61 65 aa2.18□□□□□ -2.06
CCDC88A-213ENST00000476903 KRTAP12-4P60329 112 aa2.17□□□□□ -2.06
CCDC88A-213ENST00000476903 AHNAKQ09666 5890 aaKnown RBP2.13□□□□□ -2.07
CCDC88A-213ENST00000476903 SYNE1Q8NF91 8797 aaKnown RBP2.06□□□□□ -2.08
CCDC88A-213ENST00000476903 MT1AP04731 61 aa2.05□□□□□ -2.08
CCDC88A-213ENST00000476903 MUC5ACP98088 5654 aa2.03□□□□□ -2.08
CCDC88A-213ENST00000476903 KRTAP6-1Q3LI64 71 aa2.03□□□□□ -2.08
CCDC88A-213ENST00000476903 MUC5BQ9HC84 5762 aaPredicted RBP2.02□□□□□ -2.09
CCDC88A-213ENST00000476903 KRTAP6-2Q3LI66 62 aa1.95□□□□□ -2.1
CCDC88A-213ENST00000476903 PHGR1C9JFL3 82 aa1.41□□□□□ -2.18
CCDC88A-213ENST00000476903 PRM1P04553 51 aa1.32□□□□□ -2.2
CCDC88A-213ENST00000476903 KRTAP21-1Q3LI58 79 aa1.04□□□□□ -2.24
CCDC88A-213ENST00000476903 MUC16Q8WXI7 14507 aa1.03□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 85.6 ms