RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 PMAIP1Q13794 54 aa3.75□□□□□ -1.81
UPF2-204ENST00000460569 PRO0628Q9UI54 55 aa3.74□□□□□ -1.81
UPF2-204ENST00000460569 LCE1AQ5T7P2 110 aa3.73□□□□□ -1.81
UPF2-204ENST00000460569 KRTAP12-3P60328 96 aa3.71□□□□□ -1.82
UPF2-204ENST00000460569 PP632Q6XCG6 107 aa3.7□□□□□ -1.82
UPF2-204ENST00000460569 MUC12Q9UKN1 5478 aa3.69□□□□□ -1.82
UPF2-204ENST00000460569 LCE3BQ5TA77 95 aa3.66□□□□□ -1.82
UPF2-204ENST00000460569 KRTAP19-3Q7Z4W3 81 aa3.66□□□□□ -1.82
UPF2-204ENST00000460569 LCE4AQ5TA78 99 aa3.65□□□□□ -1.83
UPF2-204ENST00000460569 MT1LQ93083 61 aa3.64□□□□□ -1.83
UPF2-204ENST00000460569 NEBP20929 6669 aa3.63□□□□□ -1.83
UPF2-204ENST00000460569 SPRR2DP22532 72 aa3.63□□□□□ -1.83
UPF2-204ENST00000460569 LCE5AQ5TCM9 118 aa3.62□□□□□ -1.83
UPF2-204ENST00000460569 MDN1Q9NU22 5596 aa3.62□□□□□ -1.83
UPF2-204ENST00000460569 A0A0A0MQY5 61 aa3.61□□□□□ -1.83
UPF2-204ENST00000460569 MT1GP13640 62 aa3.6□□□□□ -1.83
UPF2-204ENST00000460569 KRTAP15-1Q3LI76 137 aa3.56□□□□□ -1.84
UPF2-204ENST00000460569 MT1MQ8N339 61 aa3.56□□□□□ -1.84
UPF2-204ENST00000460569 KRTAP20-1Q3LI63 56 aa3.55□□□□□ -1.84
UPF2-204ENST00000460569 PRAC1Q96KF2 57 aa3.55□□□□□ -1.84
UPF2-204ENST00000460569 KRTAP9-9Q9BYP9 154 aa3.54□□□□□ -1.84
UPF2-204ENST00000460569 KRTAP9-4Q9BYQ2 154 aa3.54□□□□□ -1.84
UPF2-204ENST00000460569 KRTAP2-3P0C7H8 128 aa3.51□□□□□ -1.85
UPF2-204ENST00000460569 KTN1-AS1Q86SY8 53 aa3.51□□□□□ -1.85
UPF2-204ENST00000460569 KRTAP2-4Q9BYR9 128 aa3.51□□□□□ -1.85
UPF2-204ENST00000460569 KRTAP4-7Q9BYR0 210 aa3.48□□□□□ -1.85
UPF2-204ENST00000460569 KRTAP4-3Q9BYR4 195 aa3.46□□□□□ -1.86
UPF2-204ENST00000460569 LCE3CQ5T5A8 94 aa3.44□□□□□ -1.86
UPF2-204ENST00000460569 LCE1DQ5T752 114 aa3.44□□□□□ -1.86
UPF2-204ENST00000460569 KRTAP2-2Q9BYT5 123 aa3.42□□□□□ -1.86
UPF2-204ENST00000460569 KRTAP2-1Q9BYU5 128 aa3.42□□□□□ -1.86
UPF2-204ENST00000460569 DSTQ03001 7570 aaKnown RBP3.35□□□□□ -1.87
UPF2-204ENST00000460569 KRTAP4-9Q9BYQ8 210 aa3.3□□□□□ -1.88
UPF2-204ENST00000460569 KRTAP9-6A8MVA2 160 aa3.23□□□□□ -1.89
UPF2-204ENST00000460569 KRTAP4-11Q9BYQ6 195 aa3.22□□□□□ -1.89
UPF2-204ENST00000460569 KRTAP5-5Q701N2 237 aaPredicted RBP3.21□□□□□ -1.9
UPF2-204ENST00000460569 KRTAP5-4Q6L8H1 288 aa3.19□□□□□ -1.9
UPF2-204ENST00000460569 SPRR5A0A1B0GTR4 108 aa3.15□□□□□ -1.91
UPF2-204ENST00000460569 MT4P47944 62 aa3.15□□□□□ -1.91
UPF2-204ENST00000460569 KRTAP4-2Q9BYR5 136 aa3.12□□□□□ -1.91
UPF2-204ENST00000460569 MT1AP04731 61 aa3.1□□□□□ -1.91
UPF2-204ENST00000460569 KRTAP12-4P60329 112 aa3.07□□□□□ -1.92
UPF2-204ENST00000460569 KRTAP6-1Q3LI64 71 aa3.07□□□□□ -1.92
UPF2-204ENST00000460569 SYNE1Q8NF91 8797 aaKnown RBP3.01□□□□□ -1.93
UPF2-204ENST00000460569 KRTAP20-2Q3LI61 65 aa3.01□□□□□ -1.93
UPF2-204ENST00000460569 HMCN1Q96RW7 5635 aa3□□□□□ -1.93
UPF2-204ENST00000460569 LUZP6Q538Z0 58 aa2.95□□□□□ -1.94
UPF2-204ENST00000460569 KRTAP5-3Q6L8H2 238 aa2.89□□□□□ -1.95
UPF2-204ENST00000460569 KRTAP6-2Q3LI66 62 aa2.87□□□□□ -1.95
UPF2-204ENST00000460569 MT3P25713 68 aa2.86□□□□□ -1.95
UPF2-204ENST00000460569 KRTAP5-2Q701N4 177 aa2.86□□□□□ -1.95
UPF2-204ENST00000460569 NDUFAF8A1L188 74 aa2.82□□□□□ -1.96
UPF2-204ENST00000460569 AHNAK2Q8IVF2 5795 aa2.77□□□□□ -1.97
UPF2-204ENST00000460569 KRTAP5-10Q6L8G5 202 aa2.75□□□□□ -1.97
UPF2-204ENST00000460569 GPR98Q8WXG9 6306 aa2.69□□□□□ -1.98
UPF2-204ENST00000460569 KRTAP5-7Q6L8G8 165 aa2.59□□□□□ -1.99
UPF2-204ENST00000460569 KRTAP5-8O75690 187 aa2.57□□□□□ -2
UPF2-204ENST00000460569 OBSCNQ5VST9 7968 aa2.55□□□□□ -2
UPF2-204ENST00000460569 LCE3DQ9BYE3 92 aa2.54□□□□□ -2
UPF2-204ENST00000460569 LCE1FQ5T754 118 aa2.53□□□□□ -2
UPF2-204ENST00000460569 LCE1EQ5T753 118 aa2.5□□□□□ -2.01
UPF2-204ENST00000460569 KRTAP5-1Q6L8H4 278 aa2.5□□□□□ -2.01
UPF2-204ENST00000460569 LCE3EQ5T5B0 92 aa2.44□□□□□ -2.02
UPF2-204ENST00000460569 MUC5ACP98088 5654 aa2.38□□□□□ -2.03
UPF2-204ENST00000460569 LCE1BQ5T7P3 118 aa2.37□□□□□ -2.03
UPF2-204ENST00000460569 LCE1CQ5T751 118 aa2.32□□□□□ -2.04
UPF2-204ENST00000460569 MUC5BQ9HC84 5762 aaPredicted RBP2.22□□□□□ -2.05
UPF2-204ENST00000460569 INE1O15225 51 aa2.19□□□□□ -2.06
UPF2-204ENST00000460569 AHNAKQ09666 5890 aaKnown RBP2.17□□□□□ -2.06
UPF2-204ENST00000460569 KRTAP5-11Q6L8G4 156 aa2.15□□□□□ -2.07
UPF2-204ENST00000460569 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.15□□□□□ -2.07
UPF2-204ENST00000460569 PRM1P04553 51 aa2.02□□□□□ -2.09
UPF2-204ENST00000460569 KRTAP21-2Q3LI59 83 aa2□□□□□ -2.09
UPF2-204ENST00000460569 KRTAP4-4Q9BYR3 166 aa1.81□□□□□ -2.12
UPF2-204ENST00000460569 PHGR1C9JFL3 82 aa1.78□□□□□ -2.12
UPF2-204ENST00000460569 MUC19Q7Z5P9 8384 aa1.55□□□□□ -2.16
UPF2-204ENST00000460569 KRTAP21-1Q3LI58 79 aa1.2□□□□□ -2.22
UPF2-204ENST00000460569 MUC16Q8WXI7 14507 aa1.15□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 51.8 ms