RNA–Protein interactions for RNA: ENST00000446231.6

SMG1-202, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMG1, Length 16,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-202ENST00000446231 MT1EP04732 61 aa2.5□□□□□ -2.01
SMG1-202ENST00000446231 MUC2Q02817 5179 aa2.5□□□□□ -2.01
SMG1-202ENST00000446231 FCGBPQ9Y6R7 5405 aaPredicted RBP2.49□□□□□ -2.01
SMG1-202ENST00000446231 SPRR2FQ96RM1 72 aa2.49□□□□□ -2.01
SMG1-202ENST00000446231 GPR98Q8WXG9 6306 aa2.48□□□□□ -2.01
SMG1-202ENST00000446231 PRM1P04553 51 aa2.47□□□□□ -2.01
SMG1-202ENST00000446231 LOC100996750A0A140TA64 210 aa2.46□□□□□ -2.02
SMG1-202ENST00000446231 KRTAP9-6A8MVA2 160 aa2.43□□□□□ -2.02
SMG1-202ENST00000446231 KRTAP19-3Q7Z4W3 81 aa2.39□□□□□ -2.03
SMG1-202ENST00000446231 NEBP20929 6669 aa2.39□□□□□ -2.03
SMG1-202ENST00000446231 LCE2BO14633 110 aa2.37□□□□□ -2.03
SMG1-202ENST00000446231 KRTAP4-3Q9BYR4 195 aa2.37□□□□□ -2.03
SMG1-202ENST00000446231 MT1MQ8N339 61 aa2.37□□□□□ -2.03
SMG1-202ENST00000446231 KRTAP19-7Q3SYF9 63 aa2.35□□□□□ -2.03
SMG1-202ENST00000446231 KRTAP4-9Q9BYQ8 210 aa2.33□□□□□ -2.04
SMG1-202ENST00000446231 KMT2DO14686 5537 aa2.32□□□□□ -2.04
SMG1-202ENST00000446231 MT1AP04731 61 aa2.31□□□□□ -2.04
SMG1-202ENST00000446231 KRTAP9-7A8MTY7 169 aa2.25□□□□□ -2.05
SMG1-202ENST00000446231 SSPOA2VEC9 5147 aa2.25□□□□□ -2.05
SMG1-202ENST00000446231 SPRR2EP22531 72 aa2.23□□□□□ -2.05
SMG1-202ENST00000446231 SPRR2BP35325 72 aa2.23□□□□□ -2.05
SMG1-202ENST00000446231 SPRR2AP35326 72 aa2.23□□□□□ -2.05
SMG1-202ENST00000446231 KRTAP6-2Q3LI66 62 aa2.23□□□□□ -2.05
SMG1-202ENST00000446231 MT3P25713 68 aa2.21□□□□□ -2.06
SMG1-202ENST00000446231 AHNAK2Q8IVF2 5795 aa2.21□□□□□ -2.06
SMG1-202ENST00000446231 KRTAP9-2Q9BYQ4 174 aa2.2□□□□□ -2.06
SMG1-202ENST00000446231 SPRR2DP22532 72 aa2.16□□□□□ -2.06
SMG1-202ENST00000446231 KRTAP2-2Q9BYT5 123 aa2.16□□□□□ -2.06
SMG1-202ENST00000446231 KRTAP6-1Q3LI64 71 aa2.14□□□□□ -2.07
SMG1-202ENST00000446231 DSTQ03001 7570 aaKnown RBP2.14□□□□□ -2.07
SMG1-202ENST00000446231 HMCN1Q96RW7 5635 aa2.12□□□□□ -2.07
SMG1-202ENST00000446231 SYNE1Q8NF91 8797 aaKnown RBP2.1□□□□□ -2.07
SMG1-202ENST00000446231 KRTAP19-6Q3LI70 58 aa2.09□□□□□ -2.07
SMG1-202ENST00000446231 MACF1Q9UPN3 7388 aaKnown RBP2.05□□□□□ -2.08
SMG1-202ENST00000446231 LCE5AQ5TCM9 118 aa2.05□□□□□ -2.08
SMG1-202ENST00000446231 KRTAP9-6A0A140TA67 174 aa2.04□□□□□ -2.08
SMG1-202ENST00000446231 LCE1BQ5T7P3 118 aa2.03□□□□□ -2.08
SMG1-202ENST00000446231 KRTAP9-4Q9BYQ2 154 aa2.02□□□□□ -2.09
SMG1-202ENST00000446231 LCE1AQ5T7P2 110 aa2.02□□□□□ -2.09
SMG1-202ENST00000446231 LCE2DQ5TA82 110 aaPredicted RBP2.02□□□□□ -2.09
SMG1-202ENST00000446231 LCE1DQ5T752 114 aa2.01□□□□□ -2.09
SMG1-202ENST00000446231 KRTAP5-5Q701N2 237 aaPredicted RBP2□□□□□ -2.09
SMG1-202ENST00000446231 MT4P47944 62 aa1.97□□□□□ -2.09
SMG1-202ENST00000446231 KRTAP6-3Q3LI67 103 aa1.96□□□□□ -2.1
SMG1-202ENST00000446231 MUC5BQ9HC84 5762 aaPredicted RBP1.93□□□□□ -2.1
SMG1-202ENST00000446231 MUC5ACP98088 5654 aa1.9□□□□□ -2.1
SMG1-202ENST00000446231 LCE2AQ5TA79 106 aaPredicted RBP1.89□□□□□ -2.11
SMG1-202ENST00000446231 LCE1EQ5T753 118 aa1.88□□□□□ -2.11
SMG1-202ENST00000446231 OBSCNQ5VST9 7968 aa1.87□□□□□ -2.11
SMG1-202ENST00000446231 AHNAKQ09666 5890 aaKnown RBP1.86□□□□□ -2.11
SMG1-202ENST00000446231 KRTAP4-11Q9BYQ6 195 aa1.8□□□□□ -2.12
SMG1-202ENST00000446231 LCE4AQ5TA78 99 aa1.65□□□□□ -2.14
SMG1-202ENST00000446231 LCE1CQ5T751 118 aa1.61□□□□□ -2.15
SMG1-202ENST00000446231 LCE1FQ5T754 118 aa1.61□□□□□ -2.15
SMG1-202ENST00000446231 KRTAP4-6Q9BYQ5 205 aa1.56□□□□□ -2.16
SMG1-202ENST00000446231 KRTAP4-4Q9BYR3 166 aa1.56□□□□□ -2.16
SMG1-202ENST00000446231 KRTAP5-9P26371 169 aa1.54□□□□□ -2.16
SMG1-202ENST00000446231 KRTAP5-4Q6L8H1 288 aa1.51□□□□□ -2.17
SMG1-202ENST00000446231 KRTAP20-2Q3LI61 65 aa1.5□□□□□ -2.17
SMG1-202ENST00000446231 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.49□□□□□ -2.17
SMG1-202ENST00000446231 KRTAP20-1Q3LI63 56 aa1.48□□□□□ -2.17
SMG1-202ENST00000446231 KRTAP9-9Q9BYP9 154 aa1.4□□□□□ -2.19
SMG1-202ENST00000446231 KRTAP4-12Q9BQ66 201 aa1.39□□□□□ -2.19
SMG1-202ENST00000446231 KRTAP4-2Q9BYR5 136 aa1.39□□□□□ -2.19
SMG1-202ENST00000446231 KRTAP5-10Q6L8G5 202 aa1.34□□□□□ -2.19
SMG1-202ENST00000446231 MUC19Q7Z5P9 8384 aa1.34□□□□□ -2.2
SMG1-202ENST00000446231 KRTAP5-2Q701N4 177 aa1.28□□□□□ -2.2
SMG1-202ENST00000446231 KRTAP21-1Q3LI58 79 aa1.24□□□□□ -2.21
SMG1-202ENST00000446231 KRTAP5-3Q6L8H2 238 aa1.2□□□□□ -2.22
SMG1-202ENST00000446231 KRTAP5-1Q6L8H4 278 aa1.16□□□□□ -2.22
SMG1-202ENST00000446231 KRTAP21-2Q3LI59 83 aa1.15□□□□□ -2.22
SMG1-202ENST00000446231 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.04□□□□□ -2.24
SMG1-202ENST00000446231 KRTAP5-11Q6L8G4 156 aa1.03□□□□□ -2.24
SMG1-202ENST00000446231 KRTAP5-8O75690 187 aa1□□□□□ -2.25
SMG1-202ENST00000446231 PHGR1C9JFL3 82 aa0.96□□□□□ -2.26
SMG1-202ENST00000446231 KRTAP5-7Q6L8G8 165 aa0.87□□□□□ -2.27
SMG1-202ENST00000446231 MUC16Q8WXI7 14507 aa0.84□□□□□ -2.27
Retrieved 77 of 20,778 RNA–protein pairs in 5.7 ms