RNA–Protein interactions for RNA: ENST00000427534.6

SPG11-202, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 6,935 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-202ENST00000427534 LCE3EQ5T5B0 92 aa4.21□□□□□ -1.74
SPG11-202ENST00000427534 MT1EP04732 61 aa4.19□□□□□ -1.74
SPG11-202ENST00000427534 SYNE2Q8WXH0 6885 aaKnown RBP4.15□□□□□ -1.74
SPG11-202ENST00000427534 FSIP2Q5CZC0 6907 aa4.12□□□□□ -1.75
SPG11-202ENST00000427534 FLGP20930 4061 aaPredicted RBP4.12□□□□□ -1.75
SPG11-202ENST00000427534 KRTAP9-6A0A140TA67 174 aa4.1□□□□□ -1.75
SPG11-202ENST00000427534 KRTAP4-9Q9BYQ8 210 aa4.08□□□□□ -1.76
SPG11-202ENST00000427534 PRM1P04553 51 aa4.08□□□□□ -1.76
SPG11-202ENST00000427534 MT1MQ8N339 61 aa4.08□□□□□ -1.76
SPG11-202ENST00000427534 KRTAP19-6Q3LI70 58 aa4.07□□□□□ -1.76
SPG11-202ENST00000427534 RNF213Q63HN8 5207 aa4.05□□□□□ -1.76
SPG11-202ENST00000427534 FAT4Q6V0I7 4981 aa4.04□□□□□ -1.76
SPG11-202ENST00000427534 LCE5AQ5TCM9 118 aa4.02□□□□□ -1.77
SPG11-202ENST00000427534 MT3P25713 68 aa3.99□□□□□ -1.77
SPG11-202ENST00000427534 UBR4Q5T4S7 5183 aa3.96□□□□□ -1.77
SPG11-202ENST00000427534 KRTAP20-1Q3LI63 56 aa3.96□□□□□ -1.78
SPG11-202ENST00000427534 LCE2AQ5TA79 106 aaPredicted RBP3.94□□□□□ -1.78
SPG11-202ENST00000427534 KRTAP19-7Q3SYF9 63 aa3.9□□□□□ -1.79
SPG11-202ENST00000427534 KRTAP9-7A8MTY7 169 aa3.89□□□□□ -1.79
SPG11-202ENST00000427534 HMCN2Q8NDA2 5059 aa3.87□□□□□ -1.79
SPG11-202ENST00000427534 SYNE1Q8NF91 8797 aaKnown RBP3.77□□□□□ -1.81
SPG11-202ENST00000427534 MT1AP04731 61 aa3.77□□□□□ -1.81
SPG11-202ENST00000427534 LCE1CQ5T751 118 aa3.76□□□□□ -1.81
SPG11-202ENST00000427534 LCE1EQ5T753 118 aa3.76□□□□□ -1.81
SPG11-202ENST00000427534 LCE1FQ5T754 118 aa3.76□□□□□ -1.81
SPG11-202ENST00000427534 LCE1AQ5T7P2 110 aa3.76□□□□□ -1.81
SPG11-202ENST00000427534 MUC2Q02817 5179 aa3.76□□□□□ -1.81
SPG11-202ENST00000427534 KRTAP6-2Q3LI66 62 aa3.71□□□□□ -1.82
SPG11-202ENST00000427534 KRTAP2-3P0C7H8 128 aa3.7□□□□□ -1.82
SPG11-202ENST00000427534 KRTAP2-4Q9BYR9 128 aa3.7□□□□□ -1.82
SPG11-202ENST00000427534 KRTAP2-1Q9BYU5 128 aa3.7□□□□□ -1.82
SPG11-202ENST00000427534 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.66□□□□□ -1.82
SPG11-202ENST00000427534 KRTAP6-1Q3LI64 71 aa3.65□□□□□ -1.82
SPG11-202ENST00000427534 KRTAP9-6A8MVA2 160 aa3.58□□□□□ -1.84
SPG11-202ENST00000427534 KRTAP6-3Q3LI67 103 aa3.54□□□□□ -1.84
SPG11-202ENST00000427534 KRTAP9-4Q9BYQ2 154 aa3.48□□□□□ -1.85
SPG11-202ENST00000427534 OBSCNQ5VST9 7968 aa3.48□□□□□ -1.85
SPG11-202ENST00000427534 KRTAP2-2Q9BYT5 123 aa3.47□□□□□ -1.85
SPG11-202ENST00000427534 USH2AO75445 5202 aa3.42□□□□□ -1.86
SPG11-202ENST00000427534 LCE4AQ5TA78 99 aa3.39□□□□□ -1.87
SPG11-202ENST00000427534 KMT2DO14686 5537 aa3.37□□□□□ -1.87
SPG11-202ENST00000427534 FCGBPQ9Y6R7 5405 aaPredicted RBP3.29□□□□□ -1.88
SPG11-202ENST00000427534 KRTAP9-9Q9BYP9 154 aa3.26□□□□□ -1.89
SPG11-202ENST00000427534 DSTQ03001 7570 aaKnown RBP3.19□□□□□ -1.9
SPG11-202ENST00000427534 KRTAP4-6Q9BYQ5 205 aa3.19□□□□□ -1.9
SPG11-202ENST00000427534 KRTAP4-4Q9BYR3 166 aa3.15□□□□□ -1.9
SPG11-202ENST00000427534 MACF1Q9UPN3 7388 aaKnown RBP3.14□□□□□ -1.91
SPG11-202ENST00000427534 KRTAP4-12Q9BQ66 201 aa3.13□□□□□ -1.91
SPG11-202ENST00000427534 KRTAP4-2Q9BYR5 136 aa3.13□□□□□ -1.91
SPG11-202ENST00000427534 KRTAP4-11Q9BYQ6 195 aa3.13□□□□□ -1.91
SPG11-202ENST00000427534 KRTAP20-2Q3LI61 65 aa3.12□□□□□ -1.91
SPG11-202ENST00000427534 SSPOA2VEC9 5147 aa3.11□□□□□ -1.91
SPG11-202ENST00000427534 NEBP20929 6669 aa3.09□□□□□ -1.92
SPG11-202ENST00000427534 KRTAP5-9P26371 169 aa3.07□□□□□ -1.92
SPG11-202ENST00000427534 MUC12Q9UKN1 5478 aa2.97□□□□□ -1.93
SPG11-202ENST00000427534 MDN1Q9NU22 5596 aa2.89□□□□□ -1.95
SPG11-202ENST00000427534 MUC19Q7Z5P9 8384 aa2.74□□□□□ -1.97
SPG11-202ENST00000427534 KRTAP5-4Q6L8H1 288 aa2.68□□□□□ -1.98
SPG11-202ENST00000427534 KRTAP5-5Q701N2 237 aaPredicted RBP2.65□□□□□ -1.99
SPG11-202ENST00000427534 GPR98Q8WXG9 6306 aa2.62□□□□□ -1.99
SPG11-202ENST00000427534 MUC5ACP98088 5654 aa2.41□□□□□ -2.02
SPG11-202ENST00000427534 KRTAP5-3Q6L8H2 238 aa2.37□□□□□ -2.03
SPG11-202ENST00000427534 HMCN1Q96RW7 5635 aa2.32□□□□□ -2.04
SPG11-202ENST00000427534 AHNAK2Q8IVF2 5795 aa2.29□□□□□ -2.04
SPG11-202ENST00000427534 PHGR1C9JFL3 82 aa2.28□□□□□ -2.05
SPG11-202ENST00000427534 KRTAP5-8O75690 187 aa2.27□□□□□ -2.05
SPG11-202ENST00000427534 KRTAP5-2Q701N4 177 aa2.13□□□□□ -2.07
SPG11-202ENST00000427534 KRTAP5-10Q6L8G5 202 aa2.12□□□□□ -2.07
SPG11-202ENST00000427534 MUC5BQ9HC84 5762 aaPredicted RBP2□□□□□ -2.09
SPG11-202ENST00000427534 AHNAKQ09666 5890 aaKnown RBP1.92□□□□□ -2.1
SPG11-202ENST00000427534 KRTAP5-11Q6L8G4 156 aa1.9□□□□□ -2.11
SPG11-202ENST00000427534 KRTAP5-1Q6L8H4 278 aa1.89□□□□□ -2.11
SPG11-202ENST00000427534 KRTAP21-2Q3LI59 83 aa1.83□□□□□ -2.12
SPG11-202ENST00000427534 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.69□□□□□ -2.14
SPG11-202ENST00000427534 KRTAP21-1Q3LI58 79 aa1.64□□□□□ -2.15
SPG11-202ENST00000427534 KRTAP5-7Q6L8G8 165 aa1.48□□□□□ -2.17
SPG11-202ENST00000427534 MUC16Q8WXI7 14507 aa1.25□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 12.9 ms