RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 LOC100996750A0A140TA64 210 aa4.02□□□□□ -1.77
HMGB1-206ENST00000405805 SSPOA2VEC9 5147 aa4□□□□□ -1.77
HMGB1-206ENST00000405805 KRTAP19-7Q3SYF9 63 aa3.99□□□□□ -1.77
HMGB1-206ENST00000405805 SPRR2FQ96RM1 72 aa3.98□□□□□ -1.77
HMGB1-206ENST00000405805 MT1LQ93083 61 aa3.97□□□□□ -1.77
HMGB1-206ENST00000405805 MUC12Q9UKN1 5478 aa3.95□□□□□ -1.78
HMGB1-206ENST00000405805 LCE3BQ5TA77 95 aa3.94□□□□□ -1.78
HMGB1-206ENST00000405805 MT1EP04732 61 aa3.94□□□□□ -1.78
HMGB1-206ENST00000405805 SYNE2Q8WXH0 6885 aaKnown RBP3.87□□□□□ -1.79
HMGB1-206ENST00000405805 KRTAP19-6Q3LI70 58 aa3.86□□□□□ -1.79
HMGB1-206ENST00000405805 KRTAP2-3P0C7H8 128 aa3.79□□□□□ -1.8
HMGB1-206ENST00000405805 KRTAP2-4Q9BYR9 128 aa3.79□□□□□ -1.8
HMGB1-206ENST00000405805 KRTAP2-1Q9BYU5 128 aa3.79□□□□□ -1.8
HMGB1-206ENST00000405805 PRM1P04553 51 aa3.78□□□□□ -1.8
HMGB1-206ENST00000405805 KRTAP19-3Q7Z4W3 81 aa3.77□□□□□ -1.81
HMGB1-206ENST00000405805 KRTAP4-9Q9BYQ8 210 aa3.77□□□□□ -1.81
HMGB1-206ENST00000405805 MACF1Q9UPN3 7388 aaKnown RBP3.74□□□□□ -1.81
HMGB1-206ENST00000405805 MT1MQ8N339 61 aa3.72□□□□□ -1.81
HMGB1-206ENST00000405805 LCE3DQ9BYE3 92 aa3.72□□□□□ -1.81
HMGB1-206ENST00000405805 KRTAP19-4Q3LI73 84 aa3.71□□□□□ -1.82
HMGB1-206ENST00000405805 LCE3EQ5T5B0 92 aa3.68□□□□□ -1.82
HMGB1-206ENST00000405805 MUC19Q7Z5P9 8384 aa3.67□□□□□ -1.82
HMGB1-206ENST00000405805 KRTAP9-2Q9BYQ4 174 aa3.62□□□□□ -1.83
HMGB1-206ENST00000405805 SPRR2EP22531 72 aa3.62□□□□□ -1.83
HMGB1-206ENST00000405805 SPRR2BP35325 72 aa3.62□□□□□ -1.83
HMGB1-206ENST00000405805 SPRR2AP35326 72 aa3.62□□□□□ -1.83
HMGB1-206ENST00000405805 MDN1Q9NU22 5596 aa3.57□□□□□ -1.84
HMGB1-206ENST00000405805 LCE5AQ5TCM9 118 aa3.49□□□□□ -1.85
HMGB1-206ENST00000405805 KRTAP9-7A8MTY7 169 aa3.48□□□□□ -1.85
HMGB1-206ENST00000405805 SPRR2DP22532 72 aa3.45□□□□□ -1.86
HMGB1-206ENST00000405805 KRTAP6-1Q3LI64 71 aa3.45□□□□□ -1.86
HMGB1-206ENST00000405805 LCE1AQ5T7P2 110 aa3.38□□□□□ -1.87
HMGB1-206ENST00000405805 LCE1EQ5T753 118 aa3.32□□□□□ -1.88
HMGB1-206ENST00000405805 MT1AP04731 61 aa3.31□□□□□ -1.88
HMGB1-206ENST00000405805 KRTAP6-2Q3LI66 62 aa3.27□□□□□ -1.89
HMGB1-206ENST00000405805 KRTAP4-6Q9BYQ5 205 aa3.22□□□□□ -1.89
HMGB1-206ENST00000405805 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.2□□□□□ -1.9
HMGB1-206ENST00000405805 KRTAP9-6A0A140TA67 174 aa3.2□□□□□ -1.9
HMGB1-206ENST00000405805 MT4P47944 62 aa3.18□□□□□ -1.9
HMGB1-206ENST00000405805 KRTAP5-9P26371 169 aa3.17□□□□□ -1.9
HMGB1-206ENST00000405805 MT3P25713 68 aa3.16□□□□□ -1.9
HMGB1-206ENST00000405805 KRTAP2-2Q9BYT5 123 aa3.13□□□□□ -1.91
HMGB1-206ENST00000405805 KRTAP6-3Q3LI67 103 aa3.12□□□□□ -1.91
HMGB1-206ENST00000405805 KRTAP9-4Q9BYQ2 154 aa3.1□□□□□ -1.91
HMGB1-206ENST00000405805 KRTAP5-5Q701N2 237 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-206ENST00000405805 LCE1DQ5T752 114 aa3.05□□□□□ -1.92
HMGB1-206ENST00000405805 LCE1BQ5T7P3 118 aa2.97□□□□□ -1.93
HMGB1-206ENST00000405805 NEBP20929 6669 aa2.92□□□□□ -1.94
HMGB1-206ENST00000405805 KRTAP4-11Q9BYQ6 195 aa2.87□□□□□ -1.95
HMGB1-206ENST00000405805 KRTAP4-12Q9BQ66 201 aa2.8□□□□□ -1.96
HMGB1-206ENST00000405805 LCE1FQ5T754 118 aa2.79□□□□□ -1.96
HMGB1-206ENST00000405805 LCE4AQ5TA78 99 aa2.75□□□□□ -1.97
HMGB1-206ENST00000405805 KRTAP20-2Q3LI61 65 aa2.73□□□□□ -1.97
HMGB1-206ENST00000405805 HMCN1Q96RW7 5635 aa2.72□□□□□ -1.97
HMGB1-206ENST00000405805 KRTAP20-1Q3LI63 56 aa2.72□□□□□ -1.97
HMGB1-206ENST00000405805 KRTAP9-9Q9BYP9 154 aa2.69□□□□□ -1.98
HMGB1-206ENST00000405805 MUC5ACP98088 5654 aa2.66□□□□□ -1.98
HMGB1-206ENST00000405805 KRTAP5-4Q6L8H1 288 aa2.65□□□□□ -1.99
HMGB1-206ENST00000405805 KRTAP4-2Q9BYR5 136 aa2.49□□□□□ -2.01
HMGB1-206ENST00000405805 KRTAP4-4Q9BYR3 166 aa2.44□□□□□ -2.02
HMGB1-206ENST00000405805 KRTAP5-2Q701N4 177 aa2.42□□□□□ -2.02
HMGB1-206ENST00000405805 KRTAP5-3Q6L8H2 238 aa2.4□□□□□ -2.02
HMGB1-206ENST00000405805 AHNAK2Q8IVF2 5795 aa2.31□□□□□ -2.04
HMGB1-206ENST00000405805 KRTAP5-10Q6L8G5 202 aa2.27□□□□□ -2.05
HMGB1-206ENST00000405805 GPR98Q8WXG9 6306 aa2.26□□□□□ -2.05
HMGB1-206ENST00000405805 LCE1CQ5T751 118 aa2.24□□□□□ -2.05
HMGB1-206ENST00000405805 MUC5BQ9HC84 5762 aaPredicted RBP2.2□□□□□ -2.06
HMGB1-206ENST00000405805 KRTAP5-1Q6L8H4 278 aa2.16□□□□□ -2.06
HMGB1-206ENST00000405805 KRTAP5-8O75690 187 aa2.11□□□□□ -2.07
HMGB1-206ENST00000405805 KRTAP21-2Q3LI59 83 aa2.03□□□□□ -2.08
HMGB1-206ENST00000405805 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.87□□□□□ -2.11
HMGB1-206ENST00000405805 KRTAP5-11Q6L8G4 156 aa1.86□□□□□ -2.11
HMGB1-206ENST00000405805 AHNAKQ09666 5890 aaKnown RBP1.82□□□□□ -2.12
HMGB1-206ENST00000405805 KRTAP5-7Q6L8G8 165 aa1.81□□□□□ -2.12
HMGB1-206ENST00000405805 KRTAP21-1Q3LI58 79 aa1.8□□□□□ -2.12
HMGB1-206ENST00000405805 PHGR1C9JFL3 82 aa1.62□□□□□ -2.15
HMGB1-206ENST00000405805 MUC16Q8WXI7 14507 aa1.05□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 11.7 ms