RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 SPRR2AP35326 72 aa5.94□□□□□ -1.46
HMGA1-204ENST00000401473 KRTAP19-5Q3LI72 72 aa5.93□□□□□ -1.46
HMGA1-204ENST00000401473 MT1EP04732 61 aa5.88□□□□□ -1.47
HMGA1-204ENST00000401473 KRTAP23-1A1A580 65 aa5.78□□□□□ -1.48
HMGA1-204ENST00000401473 KRTAP12-3P60328 96 aa5.75□□□□□ -1.49
HMGA1-204ENST00000401473 KRTAP19-3Q7Z4W3 81 aa5.74□□□□□ -1.49
HMGA1-204ENST00000401473 SPRR2DP22532 72 aa5.73□□□□□ -1.49
HMGA1-204ENST00000401473 LCE5AQ5TCM9 118 aa5.72□□□□□ -1.49
HMGA1-204ENST00000401473 KRTAP20-1Q3LI63 56 aa5.71□□□□□ -1.5
HMGA1-204ENST00000401473 MT1LQ93083 61 aa5.7□□□□□ -1.5
HMGA1-204ENST00000401473 DSTQ03001 7570 aaKnown RBP5.66□□□□□ -1.5
HMGA1-204ENST00000401473 KRTAP2-3P0C7H8 128 aa5.65□□□□□ -1.5
HMGA1-204ENST00000401473 KRTAP2-4Q9BYR9 128 aa5.65□□□□□ -1.5
HMGA1-204ENST00000401473 MT1GP13640 62 aa5.64□□□□□ -1.51
HMGA1-204ENST00000401473 PP632Q6XCG6 107 aa5.64□□□□□ -1.51
HMGA1-204ENST00000401473 MT1MQ8N339 61 aa5.56□□□□□ -1.52
HMGA1-204ENST00000401473 LCE3BQ5TA77 95 aa5.55□□□□□ -1.52
HMGA1-204ENST00000401473 LUZP6Q538Z0 58 aa5.53□□□□□ -1.52
HMGA1-204ENST00000401473 KRTAP15-1Q3LI76 137 aa5.52□□□□□ -1.53
HMGA1-204ENST00000401473 KRTAP4-7Q9BYR0 210 aa5.51□□□□□ -1.53
HMGA1-204ENST00000401473 KRTAP2-2Q9BYT5 123 aa5.5□□□□□ -1.53
HMGA1-204ENST00000401473 KRTAP2-1Q9BYU5 128 aa5.5□□□□□ -1.53
HMGA1-204ENST00000401473 KRTAP4-3Q9BYR4 195 aa5.48□□□□□ -1.53
HMGA1-204ENST00000401473 NDUFAF8A1L188 74 aa5.45□□□□□ -1.54
HMGA1-204ENST00000401473 KRTAP19-4Q3LI73 84 aa5.38□□□□□ -1.55
HMGA1-204ENST00000401473 LCE3CQ5T5A8 94 aa5.35□□□□□ -1.55
HMGA1-204ENST00000401473 LOC100996750A0A140TA64 210 aa5.2□□□□□ -1.58
HMGA1-204ENST00000401473 KRTAP4-9Q9BYQ8 210 aa5.12□□□□□ -1.59
HMGA1-204ENST00000401473 KRTAP9-6A8MVA2 160 aa5.11□□□□□ -1.59
HMGA1-204ENST00000401473 KRTAP5-4Q6L8H1 288 aa5.09□□□□□ -1.6
HMGA1-204ENST00000401473 KRTAP5-5Q701N2 237 aaPredicted RBP5.09□□□□□ -1.6
HMGA1-204ENST00000401473 LCE4AQ5TA78 99 aa5.06□□□□□ -1.6
HMGA1-204ENST00000401473 HMCN1Q96RW7 5635 aa5.03□□□□□ -1.6
HMGA1-204ENST00000401473 LCE1DQ5T752 114 aa5.03□□□□□ -1.6
HMGA1-204ENST00000401473 MT4P47944 62 aa5.01□□□□□ -1.61
HMGA1-204ENST00000401473 SPRR5A0A1B0GTR4 108 aa5□□□□□ -1.61
HMGA1-204ENST00000401473 KRTAP4-6Q9BYQ5 205 aa4.94□□□□□ -1.62
HMGA1-204ENST00000401473 SYNE1Q8NF91 8797 aaKnown RBP4.87□□□□□ -1.63
HMGA1-204ENST00000401473 MT1AP04731 61 aa4.82□□□□□ -1.64
HMGA1-204ENST00000401473 KRTAP6-1Q3LI64 71 aa4.82□□□□□ -1.64
HMGA1-204ENST00000401473 KRTAP12-4P60329 112 aa4.79□□□□□ -1.64
HMGA1-204ENST00000401473 KRTAP20-2Q3LI61 65 aa4.77□□□□□ -1.65
HMGA1-204ENST00000401473 AHNAK2Q8IVF2 5795 aa4.68□□□□□ -1.66
HMGA1-204ENST00000401473 GPR98Q8WXG9 6306 aa4.67□□□□□ -1.66
HMGA1-204ENST00000401473 KRTAP9-4Q9BYQ2 154 aa4.64□□□□□ -1.67
HMGA1-204ENST00000401473 KRTAP5-3Q6L8H2 238 aa4.64□□□□□ -1.67
HMGA1-204ENST00000401473 KRTAP5-2Q701N4 177 aa4.52□□□□□ -1.69
HMGA1-204ENST00000401473 KRTAP6-2Q3LI66 62 aa4.52□□□□□ -1.69
HMGA1-204ENST00000401473 KRTAP5-10Q6L8G5 202 aa4.49□□□□□ -1.69
HMGA1-204ENST00000401473 INE1O15225 51 aa4.46□□□□□ -1.7
HMGA1-204ENST00000401473 OBSCNQ5VST9 7968 aa4.41□□□□□ -1.7
HMGA1-204ENST00000401473 MT3P25713 68 aa4.39□□□□□ -1.71
HMGA1-204ENST00000401473 KRTAP4-11Q9BYQ6 195 aa4.28□□□□□ -1.72
HMGA1-204ENST00000401473 KRTAP5-7Q6L8G8 165 aa4.24□□□□□ -1.73
HMGA1-204ENST00000401473 KRTAP5-8O75690 187 aa4.14□□□□□ -1.75
HMGA1-204ENST00000401473 KRTAP5-1Q6L8H4 278 aa4.01□□□□□ -1.77
HMGA1-204ENST00000401473 LCE3DQ9BYE3 92 aa3.94□□□□□ -1.78
HMGA1-204ENST00000401473 LCE1EQ5T753 118 aa3.93□□□□□ -1.78
HMGA1-204ENST00000401473 MUC5ACP98088 5654 aa3.92□□□□□ -1.78
HMGA1-204ENST00000401473 MUC5BQ9HC84 5762 aaPredicted RBP3.82□□□□□ -1.8
HMGA1-204ENST00000401473 KRTAP9-9Q9BYP9 154 aa3.81□□□□□ -1.8
HMGA1-204ENST00000401473 LCE3EQ5T5B0 92 aa3.77□□□□□ -1.81
HMGA1-204ENST00000401473 AHNAKQ09666 5890 aaKnown RBP3.72□□□□□ -1.81
HMGA1-204ENST00000401473 KRTAP4-2Q9BYR5 136 aa3.71□□□□□ -1.82
HMGA1-204ENST00000401473 LCE1BQ5T7P3 118 aa3.69□□□□□ -1.82
HMGA1-204ENST00000401473 LCE1CQ5T751 118 aa3.67□□□□□ -1.82
HMGA1-204ENST00000401473 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.39□□□□□ -1.87
HMGA1-204ENST00000401473 KRTAP5-11Q6L8G4 156 aa3.27□□□□□ -1.89
HMGA1-204ENST00000401473 KRTAP4-12Q9BQ66 201 aa3.25□□□□□ -1.89
HMGA1-204ENST00000401473 LCE1FQ5T754 118 aa3.22□□□□□ -1.89
HMGA1-204ENST00000401473 PRM1P04553 51 aa3.19□□□□□ -1.9
HMGA1-204ENST00000401473 KRTAP21-2Q3LI59 83 aa3.18□□□□□ -1.9
HMGA1-204ENST00000401473 KRTAP4-4Q9BYR3 166 aa2.86□□□□□ -1.95
HMGA1-204ENST00000401473 PHGR1C9JFL3 82 aa2.83□□□□□ -1.96
HMGA1-204ENST00000401473 MUC19Q7Z5P9 8384 aa2.64□□□□□ -1.99
HMGA1-204ENST00000401473 KRTAP21-1Q3LI58 79 aa2□□□□□ -2.09
HMGA1-204ENST00000401473 MUC16Q8WXI7 14507 aa1.76□□□□□ -2.13
Retrieved 77 of 20,778 RNA–protein pairs in 12.6 ms