RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 KMT2DO14686 5537 aa5.97□□□□□ -1.45
USP48-204ENST00000400301 KRTAP12-4P60329 112 aa5.96□□□□□ -1.45
USP48-204ENST00000400301 KRTAP9-6A8MVA2 160 aa5.96□□□□□ -1.46
USP48-204ENST00000400301 MT1MQ8N339 61 aa5.95□□□□□ -1.46
USP48-204ENST00000400301 LOC100996750A0A140TA64 210 aa5.95□□□□□ -1.46
USP48-204ENST00000400301 SPRR2EP22531 72 aa5.88□□□□□ -1.47
USP48-204ENST00000400301 SPRR2BP35325 72 aa5.88□□□□□ -1.47
USP48-204ENST00000400301 SPRR2AP35326 72 aa5.88□□□□□ -1.47
USP48-204ENST00000400301 KRTAP2-3P0C7H8 128 aa5.83□□□□□ -1.48
USP48-204ENST00000400301 KRTAP2-4Q9BYR9 128 aa5.83□□□□□ -1.48
USP48-204ENST00000400301 KRTAP2-1Q9BYU5 128 aa5.83□□□□□ -1.48
USP48-204ENST00000400301 SYNE1Q8NF91 8797 aaKnown RBP5.8□□□□□ -1.48
USP48-204ENST00000400301 FCGBPQ9Y6R7 5405 aaPredicted RBP5.69□□□□□ -1.5
USP48-204ENST00000400301 LCE2DQ5TA82 110 aaPredicted RBP5.68□□□□□ -1.5
USP48-204ENST00000400301 LCE3DQ9BYE3 92 aa5.66□□□□□ -1.5
USP48-204ENST00000400301 DSTQ03001 7570 aaKnown RBP5.66□□□□□ -1.5
USP48-204ENST00000400301 SPRR2DP22532 72 aa5.65□□□□□ -1.51
USP48-204ENST00000400301 LCE3EQ5T5B0 92 aa5.57□□□□□ -1.52
USP48-204ENST00000400301 SSPOA2VEC9 5147 aa5.57□□□□□ -1.52
USP48-204ENST00000400301 KRTAP9-2Q9BYQ4 174 aa5.54□□□□□ -1.52
USP48-204ENST00000400301 MUC12Q9UKN1 5478 aa5.49□□□□□ -1.53
USP48-204ENST00000400301 LCE5AQ5TCM9 118 aa5.48□□□□□ -1.53
USP48-204ENST00000400301 OBSCNQ5VST9 7968 aa5.47□□□□□ -1.53
USP48-204ENST00000400301 SYNE2Q8WXH0 6885 aaKnown RBP5.45□□□□□ -1.54
USP48-204ENST00000400301 KRTAP4-9Q9BYQ8 210 aa5.45□□□□□ -1.54
USP48-204ENST00000400301 MT1AP04731 61 aa5.41□□□□□ -1.54
USP48-204ENST00000400301 KRTAP6-1Q3LI64 71 aa5.32□□□□□ -1.56
USP48-204ENST00000400301 MT3P25713 68 aa5.25□□□□□ -1.57
USP48-204ENST00000400301 LCE1AQ5T7P2 110 aa5.25□□□□□ -1.57
USP48-204ENST00000400301 MACF1Q9UPN3 7388 aaKnown RBP5.25□□□□□ -1.57
USP48-204ENST00000400301 PRM1P04553 51 aa5.22□□□□□ -1.57
USP48-204ENST00000400301 MT4P47944 62 aa5.05□□□□□ -1.6
USP48-204ENST00000400301 KRTAP9-4Q9BYQ2 154 aa5.01□□□□□ -1.61
USP48-204ENST00000400301 KRTAP6-2Q3LI66 62 aa4.99□□□□□ -1.61
USP48-204ENST00000400301 KRTAP6-3Q3LI67 103 aa4.97□□□□□ -1.61
USP48-204ENST00000400301 KRTAP9-6A0A140TA67 174 aa4.93□□□□□ -1.62
USP48-204ENST00000400301 KRTAP9-7A8MTY7 169 aa4.91□□□□□ -1.62
USP48-204ENST00000400301 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.91□□□□□ -1.62
USP48-204ENST00000400301 KRTAP5-9P26371 169 aa4.9□□□□□ -1.63
USP48-204ENST00000400301 MDN1Q9NU22 5596 aa4.79□□□□□ -1.64
USP48-204ENST00000400301 LCE1DQ5T752 114 aa4.75□□□□□ -1.65
USP48-204ENST00000400301 LCE1BQ5T7P3 118 aa4.68□□□□□ -1.66
USP48-204ENST00000400301 LCE4AQ5TA78 99 aa4.57□□□□□ -1.68
USP48-204ENST00000400301 KRTAP5-5Q701N2 237 aaPredicted RBP4.54□□□□□ -1.68
USP48-204ENST00000400301 KRTAP2-2Q9BYT5 123 aa4.43□□□□□ -1.7
USP48-204ENST00000400301 KRTAP4-6Q9BYQ5 205 aa4.43□□□□□ -1.7
USP48-204ENST00000400301 KRTAP20-1Q3LI63 56 aa4.41□□□□□ -1.7
USP48-204ENST00000400301 NEBP20929 6669 aa4.35□□□□□ -1.71
USP48-204ENST00000400301 KRTAP20-2Q3LI61 65 aa4.29□□□□□ -1.72
USP48-204ENST00000400301 MUC19Q7Z5P9 8384 aa4.15□□□□□ -1.75
USP48-204ENST00000400301 KRTAP5-4Q6L8H1 288 aa4.07□□□□□ -1.76
USP48-204ENST00000400301 KRTAP4-11Q9BYQ6 195 aa3.93□□□□□ -1.78
USP48-204ENST00000400301 MUC5ACP98088 5654 aa3.82□□□□□ -1.8
USP48-204ENST00000400301 HMCN1Q96RW7 5635 aa3.8□□□□□ -1.8
USP48-204ENST00000400301 LCE1EQ5T753 118 aa3.79□□□□□ -1.8
USP48-204ENST00000400301 KRTAP5-2Q701N4 177 aa3.72□□□□□ -1.81
USP48-204ENST00000400301 KRTAP5-3Q6L8H2 238 aa3.62□□□□□ -1.83
USP48-204ENST00000400301 LCE1CQ5T751 118 aa3.58□□□□□ -1.84
USP48-204ENST00000400301 LCE1FQ5T754 118 aa3.58□□□□□ -1.84
USP48-204ENST00000400301 KRTAP4-4Q9BYR3 166 aa3.56□□□□□ -1.84
USP48-204ENST00000400301 KRTAP9-9Q9BYP9 154 aa3.52□□□□□ -1.85
USP48-204ENST00000400301 KRTAP5-10Q6L8G5 202 aa3.48□□□□□ -1.85
USP48-204ENST00000400301 GPR98Q8WXG9 6306 aa3.46□□□□□ -1.85
USP48-204ENST00000400301 KRTAP4-12Q9BQ66 201 aa3.44□□□□□ -1.86
USP48-204ENST00000400301 KRTAP4-2Q9BYR5 136 aa3.44□□□□□ -1.86
USP48-204ENST00000400301 AHNAK2Q8IVF2 5795 aa3.32□□□□□ -1.88
USP48-204ENST00000400301 KRTAP5-1Q6L8H4 278 aa3.23□□□□□ -1.89
USP48-204ENST00000400301 KRTAP5-8O75690 187 aa3.2□□□□□ -1.9
USP48-204ENST00000400301 KRTAP21-2Q3LI59 83 aa3.1□□□□□ -1.91
USP48-204ENST00000400301 KRTAP5-11Q6L8G4 156 aa2.98□□□□□ -1.93
USP48-204ENST00000400301 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.97□□□□□ -1.93
USP48-204ENST00000400301 MUC5BQ9HC84 5762 aaPredicted RBP2.94□□□□□ -1.94
USP48-204ENST00000400301 KRTAP5-7Q6L8G8 165 aa2.74□□□□□ -1.97
USP48-204ENST00000400301 AHNAKQ09666 5890 aaKnown RBP2.73□□□□□ -1.97
USP48-204ENST00000400301 KRTAP21-1Q3LI58 79 aa2.7□□□□□ -1.98
USP48-204ENST00000400301 PHGR1C9JFL3 82 aa2.54□□□□□ -2
USP48-204ENST00000400301 MUC16Q8WXI7 14507 aa1.61□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 12 ms