RNA–Protein interactions for RNA: ENST00000397760.8

PDLIM2-204, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,847 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-204ENST00000397760 KRTAP5-9P26371 169 aa6.98□□□□□ -1.29
PDLIM2-204ENST00000397760 KRTAP6-3Q3LI67 103 aa6.94□□□□□ -1.3
PDLIM2-204ENST00000397760 MUC12Q9UKN1 5478 aa6.92□□□□□ -1.3
PDLIM2-204ENST00000397760 MT1LQ93083 61 aa6.87□□□□□ -1.31
PDLIM2-204ENST00000397760 LCE3CQ5T5A8 94 aa6.85□□□□□ -1.31
PDLIM2-204ENST00000397760 KRTAP19-4Q3LI73 84 aa6.82□□□□□ -1.32
PDLIM2-204ENST00000397760 KRTAP9-7A8MTY7 169 aa6.81□□□□□ -1.32
PDLIM2-204ENST00000397760 KRTAP19-3Q7Z4W3 81 aa6.79□□□□□ -1.32
PDLIM2-204ENST00000397760 MDN1Q9NU22 5596 aa6.77□□□□□ -1.33
PDLIM2-204ENST00000397760 INE1O15225 51 aa6.77□□□□□ -1.33
PDLIM2-204ENST00000397760 LCE1AQ5T7P2 110 aa6.72□□□□□ -1.33
PDLIM2-204ENST00000397760 MT1GP13640 62 aa6.71□□□□□ -1.33
PDLIM2-204ENST00000397760 SPRR2EP22531 72 aa6.71□□□□□ -1.34
PDLIM2-204ENST00000397760 SPRR2BP35325 72 aa6.71□□□□□ -1.34
PDLIM2-204ENST00000397760 SPRR2AP35326 72 aa6.71□□□□□ -1.34
PDLIM2-204ENST00000397760 LCE5AQ5TCM9 118 aa6.69□□□□□ -1.34
PDLIM2-204ENST00000397760 KRTAP4-7Q9BYR0 210 aa6.64□□□□□ -1.35
PDLIM2-204ENST00000397760 MT1MQ8N339 61 aa6.63□□□□□ -1.35
PDLIM2-204ENST00000397760 NEBP20929 6669 aa6.51□□□□□ -1.37
PDLIM2-204ENST00000397760 KRTAP4-3Q9BYR4 195 aa6.5□□□□□ -1.37
PDLIM2-204ENST00000397760 KRTAP9-6A8MVA2 160 aa6.48□□□□□ -1.37
PDLIM2-204ENST00000397760 SPRR2DP22532 72 aa6.46□□□□□ -1.37
PDLIM2-204ENST00000397760 KRTAP2-3P0C7H8 128 aa6.39□□□□□ -1.39
PDLIM2-204ENST00000397760 KRTAP2-4Q9BYR9 128 aa6.39□□□□□ -1.39
PDLIM2-204ENST00000397760 KRTAP2-1Q9BYU5 128 aa6.39□□□□□ -1.39
PDLIM2-204ENST00000397760 DSTQ03001 7570 aaKnown RBP6.34□□□□□ -1.39
PDLIM2-204ENST00000397760 LOC100996750A0A140TA64 210 aa6.24□□□□□ -1.41
PDLIM2-204ENST00000397760 LCE3BQ5TA77 95 aa6.22□□□□□ -1.41
PDLIM2-204ENST00000397760 KRTAP20-1Q3LI63 56 aa6.04□□□□□ -1.44
PDLIM2-204ENST00000397760 KRTAP5-5Q701N2 237 aaPredicted RBP5.98□□□□□ -1.45
PDLIM2-204ENST00000397760 KRTAP2-2Q9BYT5 123 aa5.97□□□□□ -1.45
PDLIM2-204ENST00000397760 MT1AP04731 61 aa5.83□□□□□ -1.48
PDLIM2-204ENST00000397760 KRTAP5-4Q6L8H1 288 aa5.79□□□□□ -1.48
PDLIM2-204ENST00000397760 KRTAP6-1Q3LI64 71 aa5.78□□□□□ -1.48
PDLIM2-204ENST00000397760 LCE4AQ5TA78 99 aa5.73□□□□□ -1.49
PDLIM2-204ENST00000397760 SYNE1Q8NF91 8797 aaKnown RBP5.67□□□□□ -1.5
PDLIM2-204ENST00000397760 MT4P47944 62 aa5.62□□□□□ -1.51
PDLIM2-204ENST00000397760 KRTAP12-4P60329 112 aa5.62□□□□□ -1.51
PDLIM2-204ENST00000397760 KRTAP4-9Q9BYQ8 210 aa5.6□□□□□ -1.51
PDLIM2-204ENST00000397760 KRTAP9-4Q9BYQ2 154 aa5.56□□□□□ -1.52
PDLIM2-204ENST00000397760 KRTAP4-6Q9BYQ5 205 aa5.55□□□□□ -1.52
PDLIM2-204ENST00000397760 LCE1DQ5T752 114 aa5.54□□□□□ -1.52
PDLIM2-204ENST00000397760 HMCN1Q96RW7 5635 aa5.46□□□□□ -1.54
PDLIM2-204ENST00000397760 KRTAP20-2Q3LI61 65 aa5.43□□□□□ -1.54
PDLIM2-204ENST00000397760 KRTAP6-2Q3LI66 62 aa5.36□□□□□ -1.55
PDLIM2-204ENST00000397760 MT3P25713 68 aa5.3□□□□□ -1.56
PDLIM2-204ENST00000397760 LCE3DQ9BYE3 92 aa5.27□□□□□ -1.57
PDLIM2-204ENST00000397760 KRTAP5-3Q6L8H2 238 aa5.23□□□□□ -1.57
PDLIM2-204ENST00000397760 KRTAP5-2Q701N4 177 aa5.22□□□□□ -1.57
PDLIM2-204ENST00000397760 LCE3EQ5T5B0 92 aa5.21□□□□□ -1.58
PDLIM2-204ENST00000397760 AHNAK2Q8IVF2 5795 aa4.93□□□□□ -1.62
PDLIM2-204ENST00000397760 OBSCNQ5VST9 7968 aa4.89□□□□□ -1.63
PDLIM2-204ENST00000397760 PRM1P04553 51 aa4.86□□□□□ -1.63
PDLIM2-204ENST00000397760 KRTAP4-11Q9BYQ6 195 aa4.75□□□□□ -1.65
PDLIM2-204ENST00000397760 KRTAP5-10Q6L8G5 202 aa4.68□□□□□ -1.66
PDLIM2-204ENST00000397760 LCE1EQ5T753 118 aa4.63□□□□□ -1.67
PDLIM2-204ENST00000397760 GPR98Q8WXG9 6306 aa4.6□□□□□ -1.67
PDLIM2-204ENST00000397760 KRTAP5-8O75690 187 aa4.57□□□□□ -1.68
PDLIM2-204ENST00000397760 KRTAP5-1Q6L8H4 278 aa4.55□□□□□ -1.68
PDLIM2-204ENST00000397760 KRTAP5-7Q6L8G8 165 aa4.38□□□□□ -1.71
PDLIM2-204ENST00000397760 MUC5ACP98088 5654 aa4.38□□□□□ -1.71
PDLIM2-204ENST00000397760 LCE1BQ5T7P3 118 aa4.37□□□□□ -1.71
PDLIM2-204ENST00000397760 KRTAP4-2Q9BYR5 136 aa4.33□□□□□ -1.72
PDLIM2-204ENST00000397760 LCE1CQ5T751 118 aa4.31□□□□□ -1.72
PDLIM2-204ENST00000397760 KRTAP9-9Q9BYP9 154 aa4.17□□□□□ -1.74
PDLIM2-204ENST00000397760 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.01□□□□□ -1.77
PDLIM2-204ENST00000397760 MUC5BQ9HC84 5762 aaPredicted RBP3.94□□□□□ -1.78
PDLIM2-204ENST00000397760 KRTAP5-11Q6L8G4 156 aa3.81□□□□□ -1.8
PDLIM2-204ENST00000397760 AHNAKQ09666 5890 aaKnown RBP3.79□□□□□ -1.8
PDLIM2-204ENST00000397760 KRTAP21-2Q3LI59 83 aa3.79□□□□□ -1.8
PDLIM2-204ENST00000397760 KRTAP4-12Q9BQ66 201 aa3.66□□□□□ -1.82
PDLIM2-204ENST00000397760 LCE1FQ5T754 118 aa3.49□□□□□ -1.85
PDLIM2-204ENST00000397760 KRTAP4-4Q9BYR3 166 aa3.4□□□□□ -1.87
PDLIM2-204ENST00000397760 PHGR1C9JFL3 82 aa3.28□□□□□ -1.88
PDLIM2-204ENST00000397760 KRTAP21-1Q3LI58 79 aa3.14□□□□□ -1.91
PDLIM2-204ENST00000397760 MUC19Q7Z5P9 8384 aa2.93□□□□□ -1.94
PDLIM2-204ENST00000397760 MUC16Q8WXI7 14507 aa2.09□□□□□ -2.08
Retrieved 77 of 20,778 RNA–protein pairs in 363.4 ms