RNA–Protein interactions for RNA: ENST00000393118.6

CALD1-203, Transcript of caldesmon 1, humanhuman

TSL 1 (best) BASIC

Gene CALD1, Length 4,281 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-203ENST00000393118 KRTAP19-4Q3LI73 84 aa3.54□□□□□ -1.84
CALD1-203ENST00000393118 OBSCNQ5VST9 7968 aa3.53□□□□□ -1.84
CALD1-203ENST00000393118 KRTAP9-6A8MVA2 160 aa3.51□□□□□ -1.85
CALD1-203ENST00000393118 KRTAP19-6Q3LI70 58 aa3.51□□□□□ -1.85
CALD1-203ENST00000393118 KRTAP4-3Q9BYR4 195 aa3.51□□□□□ -1.85
CALD1-203ENST00000393118 SSPOA2VEC9 5147 aa3.49□□□□□ -1.85
CALD1-203ENST00000393118 FCGBPQ9Y6R7 5405 aaPredicted RBP3.49□□□□□ -1.85
CALD1-203ENST00000393118 LOC100996750A0A140TA64 210 aa3.47□□□□□ -1.85
CALD1-203ENST00000393118 MUC12Q9UKN1 5478 aa3.45□□□□□ -1.86
CALD1-203ENST00000393118 KRTAP19-3Q7Z4W3 81 aa3.44□□□□□ -1.86
CALD1-203ENST00000393118 MT1MQ8N339 61 aa3.39□□□□□ -1.87
CALD1-203ENST00000393118 LCE3BQ5TA77 95 aa3.39□□□□□ -1.87
CALD1-203ENST00000393118 KRTAP9-2Q9BYQ4 174 aa3.38□□□□□ -1.87
CALD1-203ENST00000393118 SPRR2EP22531 72 aa3.36□□□□□ -1.87
CALD1-203ENST00000393118 SPRR2BP35325 72 aa3.36□□□□□ -1.87
CALD1-203ENST00000393118 SPRR2AP35326 72 aa3.36□□□□□ -1.87
CALD1-203ENST00000393118 SYNE2Q8WXH0 6885 aaKnown RBP3.33□□□□□ -1.88
CALD1-203ENST00000393118 KRTAP2-3P0C7H8 128 aa3.33□□□□□ -1.88
CALD1-203ENST00000393118 KRTAP2-4Q9BYR9 128 aa3.33□□□□□ -1.88
CALD1-203ENST00000393118 KRTAP2-1Q9BYU5 128 aa3.33□□□□□ -1.88
CALD1-203ENST00000393118 MACF1Q9UPN3 7388 aaKnown RBP3.28□□□□□ -1.88
CALD1-203ENST00000393118 SPRR2DP22532 72 aa3.26□□□□□ -1.89
CALD1-203ENST00000393118 KRTAP9-6A0A140TA67 174 aa3.24□□□□□ -1.89
CALD1-203ENST00000393118 PRM1P04553 51 aa3.19□□□□□ -1.9
CALD1-203ENST00000393118 LCE5AQ5TCM9 118 aa3.17□□□□□ -1.9
CALD1-203ENST00000393118 KRTAP4-9Q9BYQ8 210 aa3.17□□□□□ -1.9
CALD1-203ENST00000393118 LCE3DQ9BYE3 92 aa3.14□□□□□ -1.91
CALD1-203ENST00000393118 LCE3EQ5T5B0 92 aa3.11□□□□□ -1.91
CALD1-203ENST00000393118 MDN1Q9NU22 5596 aa3.08□□□□□ -1.92
CALD1-203ENST00000393118 KRTAP6-1Q3LI64 71 aa3.07□□□□□ -1.92
CALD1-203ENST00000393118 LCE1AQ5T7P2 110 aa3.06□□□□□ -1.92
CALD1-203ENST00000393118 MT1AP04731 61 aa3.04□□□□□ -1.92
CALD1-203ENST00000393118 KRTAP9-7A8MTY7 169 aa3.02□□□□□ -1.93
CALD1-203ENST00000393118 KRTAP6-3Q3LI67 103 aa3.01□□□□□ -1.93
CALD1-203ENST00000393118 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.96□□□□□ -1.94
CALD1-203ENST00000393118 MT3P25713 68 aa2.89□□□□□ -1.95
CALD1-203ENST00000393118 KRTAP20-1Q3LI63 56 aa2.89□□□□□ -1.95
CALD1-203ENST00000393118 MT4P47944 62 aa2.88□□□□□ -1.95
CALD1-203ENST00000393118 KRTAP5-9P26371 169 aa2.87□□□□□ -1.95
CALD1-203ENST00000393118 KRTAP6-2Q3LI66 62 aa2.85□□□□□ -1.95
CALD1-203ENST00000393118 KRTAP4-6Q9BYQ5 205 aa2.84□□□□□ -1.95
CALD1-203ENST00000393118 GPR98Q8WXG9 6306 aa2.84□□□□□ -1.95
CALD1-203ENST00000393118 KRTAP9-4Q9BYQ2 154 aa2.84□□□□□ -1.96
CALD1-203ENST00000393118 MUC19Q7Z5P9 8384 aa2.8□□□□□ -1.96
CALD1-203ENST00000393118 KRTAP2-2Q9BYT5 123 aa2.78□□□□□ -1.96
CALD1-203ENST00000393118 LCE1EQ5T753 118 aa2.72□□□□□ -1.97
CALD1-203ENST00000393118 LCE4AQ5TA78 99 aa2.72□□□□□ -1.97
CALD1-203ENST00000393118 KRTAP5-5Q701N2 237 aaPredicted RBP2.69□□□□□ -1.98
CALD1-203ENST00000393118 LCE1BQ5T7P3 118 aa2.68□□□□□ -1.98
CALD1-203ENST00000393118 LCE1DQ5T752 114 aa2.67□□□□□ -1.98
CALD1-203ENST00000393118 NEBP20929 6669 aa2.58□□□□□ -2
CALD1-203ENST00000393118 KRTAP4-12Q9BQ66 201 aa2.5□□□□□ -2.01
CALD1-203ENST00000393118 KRTAP20-2Q3LI61 65 aa2.48□□□□□ -2.01
CALD1-203ENST00000393118 KRTAP4-11Q9BYQ6 195 aa2.41□□□□□ -2.02
CALD1-203ENST00000393118 KRTAP5-4Q6L8H1 288 aa2.39□□□□□ -2.03
CALD1-203ENST00000393118 HMCN1Q96RW7 5635 aa2.38□□□□□ -2.03
CALD1-203ENST00000393118 KRTAP9-9Q9BYP9 154 aa2.34□□□□□ -2.03
CALD1-203ENST00000393118 LCE1FQ5T754 118 aa2.33□□□□□ -2.04
CALD1-203ENST00000393118 LCE1CQ5T751 118 aa2.31□□□□□ -2.04
CALD1-203ENST00000393118 MUC5ACP98088 5654 aa2.3□□□□□ -2.04
CALD1-203ENST00000393118 KRTAP4-2Q9BYR5 136 aa2.2□□□□□ -2.06
CALD1-203ENST00000393118 KRTAP5-2Q701N4 177 aa2.2□□□□□ -2.06
CALD1-203ENST00000393118 KRTAP5-3Q6L8H2 238 aa2.16□□□□□ -2.06
CALD1-203ENST00000393118 KRTAP4-4Q9BYR3 166 aa2.06□□□□□ -2.08
CALD1-203ENST00000393118 AHNAK2Q8IVF2 5795 aa2.04□□□□□ -2.08
CALD1-203ENST00000393118 KRTAP5-10Q6L8G5 202 aa2.02□□□□□ -2.09
CALD1-203ENST00000393118 KRTAP5-1Q6L8H4 278 aa1.94□□□□□ -2.1
CALD1-203ENST00000393118 KRTAP5-8O75690 187 aa1.89□□□□□ -2.11
CALD1-203ENST00000393118 MUC5BQ9HC84 5762 aaPredicted RBP1.88□□□□□ -2.11
CALD1-203ENST00000393118 KRTAP21-2Q3LI59 83 aa1.83□□□□□ -2.12
CALD1-203ENST00000393118 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.72□□□□□ -2.13
CALD1-203ENST00000393118 AHNAKQ09666 5890 aaKnown RBP1.71□□□□□ -2.14
CALD1-203ENST00000393118 KRTAP5-11Q6L8G4 156 aa1.71□□□□□ -2.14
CALD1-203ENST00000393118 KRTAP21-1Q3LI58 79 aa1.66□□□□□ -2.14
CALD1-203ENST00000393118 KRTAP5-7Q6L8G8 165 aa1.62□□□□□ -2.15
CALD1-203ENST00000393118 PHGR1C9JFL3 82 aa1.49□□□□□ -2.17
CALD1-203ENST00000393118 MUC16Q8WXI7 14507 aa0.94□□□□□ -2.26
Retrieved 77 of 20,778 RNA–protein pairs in 109.5 ms