RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 KRTAP6-3Q3LI67 103 aa9.53□□□□□ -0.88
MSX1-201ENST00000382723 KRTAP19-3Q7Z4W3 81 aa9.42□□□□□ -0.9
MSX1-201ENST00000382723 LUZP6Q538Z0 58 aa9.4□□□□□ -0.9
MSX1-201ENST00000382723 MDN1Q9NU22 5596 aa9.36□□□□□ -0.91
MSX1-201ENST00000382723 SPRR5A0A1B0GTR4 108 aa9.35□□□□□ -0.91
MSX1-201ENST00000382723 KRTAP9-7A8MTY7 169 aa9.35□□□□□ -0.91
MSX1-201ENST00000382723 LCE3CQ5T5A8 94 aa9.35□□□□□ -0.91
MSX1-201ENST00000382723 MT1GP13640 62 aa9.31□□□□□ -0.92
MSX1-201ENST00000382723 LCE1AQ5T7P2 110 aa9.31□□□□□ -0.92
MSX1-201ENST00000382723 KRTAP4-7Q9BYR0 210 aa9.3□□□□□ -0.92
MSX1-201ENST00000382723 SPRR2EP22531 72 aa9.29□□□□□ -0.92
MSX1-201ENST00000382723 SPRR2BP35325 72 aa9.29□□□□□ -0.92
MSX1-201ENST00000382723 SPRR2AP35326 72 aa9.29□□□□□ -0.92
MSX1-201ENST00000382723 KRTAP19-4Q3LI73 84 aa9.27□□□□□ -0.93
MSX1-201ENST00000382723 LCE5AQ5TCM9 118 aa9.27□□□□□ -0.93
MSX1-201ENST00000382723 MT1MQ8N339 61 aa9.22□□□□□ -0.93
MSX1-201ENST00000382723 A0A0A0MQY5 61 aa9.14□□□□□ -0.95
MSX1-201ENST00000382723 KRTAP4-3Q9BYR4 195 aa9.1□□□□□ -0.95
MSX1-201ENST00000382723 SPRR2DP22532 72 aa8.94□□□□□ -0.98
MSX1-201ENST00000382723 NEBP20929 6669 aa8.89□□□□□ -0.99
MSX1-201ENST00000382723 KRTAP9-6A8MVA2 160 aa8.86□□□□□ -0.99
MSX1-201ENST00000382723 DSTQ03001 7570 aaKnown RBP8.82□□□□□ -1
MSX1-201ENST00000382723 LOC100996750A0A140TA64 210 aa8.74□□□□□ -1.01
MSX1-201ENST00000382723 LCE3BQ5TA77 95 aa8.6□□□□□ -1.03
MSX1-201ENST00000382723 KRTAP2-3P0C7H8 128 aa8.37□□□□□ -1.07
MSX1-201ENST00000382723 KRTAP2-4Q9BYR9 128 aa8.37□□□□□ -1.07
MSX1-201ENST00000382723 KRTAP5-5Q701N2 237 aaPredicted RBP8.3□□□□□ -1.08
MSX1-201ENST00000382723 INE1O15225 51 aa8.29□□□□□ -1.08
MSX1-201ENST00000382723 KRTAP20-1Q3LI63 56 aa8.29□□□□□ -1.08
MSX1-201ENST00000382723 KRTAP2-2Q9BYT5 123 aa8.19□□□□□ -1.1
MSX1-201ENST00000382723 KRTAP2-1Q9BYU5 128 aa8.19□□□□□ -1.1
MSX1-201ENST00000382723 MT1AP04731 61 aa8.1□□□□□ -1.11
MSX1-201ENST00000382723 KRTAP6-1Q3LI64 71 aa8.07□□□□□ -1.12
MSX1-201ENST00000382723 KRTAP5-4Q6L8H1 288 aa7.98□□□□□ -1.13
MSX1-201ENST00000382723 LCE4AQ5TA78 99 aa7.88□□□□□ -1.15
MSX1-201ENST00000382723 SYNE1Q8NF91 8797 aaKnown RBP7.86□□□□□ -1.15
MSX1-201ENST00000382723 MT4P47944 62 aa7.81□□□□□ -1.16
MSX1-201ENST00000382723 KRTAP4-9Q9BYQ8 210 aa7.78□□□□□ -1.16
MSX1-201ENST00000382723 KRTAP12-4P60329 112 aa7.77□□□□□ -1.17
MSX1-201ENST00000382723 KRTAP9-4Q9BYQ2 154 aa7.72□□□□□ -1.17
MSX1-201ENST00000382723 KRTAP4-6Q9BYQ5 205 aa7.71□□□□□ -1.18
MSX1-201ENST00000382723 LCE1DQ5T752 114 aa7.66□□□□□ -1.18
MSX1-201ENST00000382723 HMCN1Q96RW7 5635 aa7.54□□□□□ -1.2
MSX1-201ENST00000382723 KRTAP20-2Q3LI61 65 aa7.51□□□□□ -1.21
MSX1-201ENST00000382723 KRTAP6-2Q3LI66 62 aa7.47□□□□□ -1.21
MSX1-201ENST00000382723 MT3P25713 68 aa7.36□□□□□ -1.23
MSX1-201ENST00000382723 KRTAP5-3Q6L8H2 238 aa7.22□□□□□ -1.25
MSX1-201ENST00000382723 KRTAP5-2Q701N4 177 aa7.21□□□□□ -1.25
MSX1-201ENST00000382723 LCE3DQ9BYE3 92 aa6.99□□□□□ -1.29
MSX1-201ENST00000382723 OBSCNQ5VST9 7968 aa6.83□□□□□ -1.32
MSX1-201ENST00000382723 LCE3EQ5T5B0 92 aa6.77□□□□□ -1.33
MSX1-201ENST00000382723 AHNAK2Q8IVF2 5795 aa6.73□□□□□ -1.33
MSX1-201ENST00000382723 KRTAP4-11Q9BYQ6 195 aa6.55□□□□□ -1.36
MSX1-201ENST00000382723 KRTAP5-10Q6L8G5 202 aa6.41□□□□□ -1.38
MSX1-201ENST00000382723 LCE1EQ5T753 118 aa6.38□□□□□ -1.39
MSX1-201ENST00000382723 KRTAP5-8O75690 187 aa6.3□□□□□ -1.4
MSX1-201ENST00000382723 KRTAP5-1Q6L8H4 278 aa6.28□□□□□ -1.4
MSX1-201ENST00000382723 GPR98Q8WXG9 6306 aa6.16□□□□□ -1.42
MSX1-201ENST00000382723 LCE1BQ5T7P3 118 aa6.1□□□□□ -1.43
MSX1-201ENST00000382723 MUC5ACP98088 5654 aa6.03□□□□□ -1.44
MSX1-201ENST00000382723 KRTAP5-7Q6L8G8 165 aa6.01□□□□□ -1.45
MSX1-201ENST00000382723 KRTAP4-2Q9BYR5 136 aa5.99□□□□□ -1.45
MSX1-201ENST00000382723 PRM1P04553 51 aa5.99□□□□□ -1.45
MSX1-201ENST00000382723 LCE1CQ5T751 118 aa5.96□□□□□ -1.46
MSX1-201ENST00000382723 KRTAP9-9Q9BYP9 154 aa5.87□□□□□ -1.47
MSX1-201ENST00000382723 KRTAP4-12Q9BQ66 201 aa5.78□□□□□ -1.48
MSX1-201ENST00000382723 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.53□□□□□ -1.52
MSX1-201ENST00000382723 MUC5BQ9HC84 5762 aaPredicted RBP5.44□□□□□ -1.54
MSX1-201ENST00000382723 KRTAP21-2Q3LI59 83 aa5.27□□□□□ -1.57
MSX1-201ENST00000382723 KRTAP5-11Q6L8G4 156 aa5.27□□□□□ -1.57
MSX1-201ENST00000382723 AHNAKQ09666 5890 aaKnown RBP5.11□□□□□ -1.59
MSX1-201ENST00000382723 KRTAP4-4Q9BYR3 166 aa4.78□□□□□ -1.64
MSX1-201ENST00000382723 LCE1FQ5T754 118 aa4.77□□□□□ -1.65
MSX1-201ENST00000382723 PHGR1C9JFL3 82 aa4.54□□□□□ -1.68
MSX1-201ENST00000382723 MUC19Q7Z5P9 8384 aa4.09□□□□□ -1.75
MSX1-201ENST00000382723 KRTAP21-1Q3LI58 79 aa3.73□□□□□ -1.81
MSX1-201ENST00000382723 MUC16Q8WXI7 14507 aa2.93□□□□□ -1.94
Retrieved 77 of 20,778 RNA–protein pairs in 69.7 ms