RNA–Protein interactions for RNA: ENST00000371142.8

TM9SF3-201, Transcript of transmembrane 9 superfamily member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF3, Length 6,141 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-201ENST00000371142 KRTAP19-6Q3LI70 58 aa6.69□□□□□ -1.34
TM9SF3-201ENST00000371142 FLGP20930 4061 aaPredicted RBP6.69□□□□□ -1.34
TM9SF3-201ENST00000371142 LCE1DQ5T752 114 aa6.65□□□□□ -1.34
TM9SF3-201ENST00000371142 KRTAP9-2Q9BYQ4 174 aa6.64□□□□□ -1.35
TM9SF3-201ENST00000371142 MUC17Q685J3 4493 aa6.57□□□□□ -1.36
TM9SF3-201ENST00000371142 EPPK1P58107 5090 aaKnown RBP6.49□□□□□ -1.37
TM9SF3-201ENST00000371142 KRTAP4-9Q9BYQ8 210 aa6.43□□□□□ -1.38
TM9SF3-201ENST00000371142 KRTAP19-7Q3SYF9 63 aa6.41□□□□□ -1.38
TM9SF3-201ENST00000371142 MT1AP04731 61 aa6.38□□□□□ -1.39
TM9SF3-201ENST00000371142 ABCA13Q86UQ4 5058 aa6.31□□□□□ -1.4
TM9SF3-201ENST00000371142 KRTAP2-3P0C7H8 128 aa6.29□□□□□ -1.4
TM9SF3-201ENST00000371142 KRTAP2-4Q9BYR9 128 aa6.29□□□□□ -1.4
TM9SF3-201ENST00000371142 KRTAP2-1Q9BYU5 128 aa6.29□□□□□ -1.4
TM9SF3-201ENST00000371142 LCE5AQ5TCM9 118 aa6.27□□□□□ -1.41
TM9SF3-201ENST00000371142 LCE2AQ5TA79 106 aaPredicted RBP6.24□□□□□ -1.41
TM9SF3-201ENST00000371142 KRTAP9-6A0A140TA67 174 aa6.24□□□□□ -1.41
TM9SF3-201ENST00000371142 FSIP2Q5CZC0 6907 aa6.15□□□□□ -1.42
TM9SF3-201ENST00000371142 SYNE1Q8NF91 8797 aaKnown RBP6.15□□□□□ -1.42
TM9SF3-201ENST00000371142 HMCN2Q8NDA2 5059 aa6.14□□□□□ -1.43
TM9SF3-201ENST00000371142 SYNE2Q8WXH0 6885 aaKnown RBP6.13□□□□□ -1.43
TM9SF3-201ENST00000371142 FAT4Q6V0I7 4981 aa6.13□□□□□ -1.43
TM9SF3-201ENST00000371142 KRTAP20-1Q3LI63 56 aa6.11□□□□□ -1.43
TM9SF3-201ENST00000371142 RNF213Q63HN8 5207 aa6.08□□□□□ -1.44
TM9SF3-201ENST00000371142 KRTAP6-1Q3LI64 71 aa6.04□□□□□ -1.44
TM9SF3-201ENST00000371142 KRTAP6-2Q3LI66 62 aa6.02□□□□□ -1.45
TM9SF3-201ENST00000371142 UBR4Q5T4S7 5183 aa6.01□□□□□ -1.45
TM9SF3-201ENST00000371142 KRTAP9-7A8MTY7 169 aa5.94□□□□□ -1.46
TM9SF3-201ENST00000371142 MUC2Q02817 5179 aa5.93□□□□□ -1.46
TM9SF3-201ENST00000371142 KRTAP9-4Q9BYQ2 154 aa5.91□□□□□ -1.46
TM9SF3-201ENST00000371142 KRTAP9-6A8MVA2 160 aa5.91□□□□□ -1.46
TM9SF3-201ENST00000371142 LCE1AQ5T7P2 110 aa5.89□□□□□ -1.47
TM9SF3-201ENST00000371142 KRTAP6-3Q3LI67 103 aa5.86□□□□□ -1.47
TM9SF3-201ENST00000371142 OBSCNQ5VST9 7968 aa5.76□□□□□ -1.49
TM9SF3-201ENST00000371142 LCE1CQ5T751 118 aa5.75□□□□□ -1.49
TM9SF3-201ENST00000371142 LCE1EQ5T753 118 aa5.75□□□□□ -1.49
TM9SF3-201ENST00000371142 LCE1FQ5T754 118 aa5.75□□□□□ -1.49
TM9SF3-201ENST00000371142 LCE4AQ5TA78 99 aa5.75□□□□□ -1.49
TM9SF3-201ENST00000371142 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.7□□□□□ -1.5
TM9SF3-201ENST00000371142 KRTAP2-2Q9BYT5 123 aa5.62□□□□□ -1.51
TM9SF3-201ENST00000371142 USH2AO75445 5202 aa5.2□□□□□ -1.58
TM9SF3-201ENST00000371142 FCGBPQ9Y6R7 5405 aaPredicted RBP5.19□□□□□ -1.58
TM9SF3-201ENST00000371142 KRTAP9-9Q9BYP9 154 aa5.16□□□□□ -1.58
TM9SF3-201ENST00000371142 DSTQ03001 7570 aaKnown RBP5.04□□□□□ -1.6
TM9SF3-201ENST00000371142 KRTAP4-11Q9BYQ6 195 aa5.04□□□□□ -1.6
TM9SF3-201ENST00000371142 KMT2DO14686 5537 aa5.03□□□□□ -1.6
TM9SF3-201ENST00000371142 KRTAP4-6Q9BYQ5 205 aa4.96□□□□□ -1.62
TM9SF3-201ENST00000371142 MACF1Q9UPN3 7388 aaKnown RBP4.85□□□□□ -1.63
TM9SF3-201ENST00000371142 KRTAP5-9P26371 169 aa4.84□□□□□ -1.64
TM9SF3-201ENST00000371142 NEBP20929 6669 aa4.82□□□□□ -1.64
TM9SF3-201ENST00000371142 KRTAP20-2Q3LI61 65 aa4.82□□□□□ -1.64
TM9SF3-201ENST00000371142 SSPOA2VEC9 5147 aa4.78□□□□□ -1.64
TM9SF3-201ENST00000371142 KRTAP4-4Q9BYR3 166 aa4.71□□□□□ -1.65
TM9SF3-201ENST00000371142 KRTAP4-12Q9BQ66 201 aa4.62□□□□□ -1.67
TM9SF3-201ENST00000371142 KRTAP4-2Q9BYR5 136 aa4.62□□□□□ -1.67
TM9SF3-201ENST00000371142 MUC12Q9UKN1 5478 aa4.49□□□□□ -1.69
TM9SF3-201ENST00000371142 MUC19Q7Z5P9 8384 aa4.47□□□□□ -1.69
TM9SF3-201ENST00000371142 KRTAP5-4Q6L8H1 288 aa4.4□□□□□ -1.7
TM9SF3-201ENST00000371142 KRTAP5-5Q701N2 237 aaPredicted RBP4.38□□□□□ -1.71
TM9SF3-201ENST00000371142 MDN1Q9NU22 5596 aa4.3□□□□□ -1.72
TM9SF3-201ENST00000371142 GPR98Q8WXG9 6306 aa4.04□□□□□ -1.76
TM9SF3-201ENST00000371142 KRTAP5-3Q6L8H2 238 aa3.82□□□□□ -1.8
TM9SF3-201ENST00000371142 MUC5ACP98088 5654 aa3.8□□□□□ -1.8
TM9SF3-201ENST00000371142 KRTAP5-8O75690 187 aa3.57□□□□□ -1.84
TM9SF3-201ENST00000371142 HMCN1Q96RW7 5635 aa3.48□□□□□ -1.85
TM9SF3-201ENST00000371142 KRTAP5-10Q6L8G5 202 aa3.48□□□□□ -1.85
TM9SF3-201ENST00000371142 PHGR1C9JFL3 82 aa3.39□□□□□ -1.87
TM9SF3-201ENST00000371142 AHNAK2Q8IVF2 5795 aa3.28□□□□□ -1.88
TM9SF3-201ENST00000371142 KRTAP5-2Q701N4 177 aa3.26□□□□□ -1.89
TM9SF3-201ENST00000371142 MUC5BQ9HC84 5762 aaPredicted RBP3.17□□□□□ -1.9
TM9SF3-201ENST00000371142 KRTAP5-1Q6L8H4 278 aa3.13□□□□□ -1.91
TM9SF3-201ENST00000371142 KRTAP5-11Q6L8G4 156 aa3.04□□□□□ -1.92
TM9SF3-201ENST00000371142 KRTAP21-2Q3LI59 83 aa2.92□□□□□ -1.94
TM9SF3-201ENST00000371142 AHNAKQ09666 5890 aaKnown RBP2.9□□□□□ -1.94
TM9SF3-201ENST00000371142 KRTAP21-1Q3LI58 79 aa2.69□□□□□ -1.98
TM9SF3-201ENST00000371142 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.54□□□□□ -2
TM9SF3-201ENST00000371142 KRTAP5-7Q6L8G8 165 aa2.34□□□□□ -2.03
TM9SF3-201ENST00000371142 MUC16Q8WXI7 14507 aa1.97□□□□□ -2.09
Retrieved 77 of 20,778 RNA–protein pairs in 72.6 ms