RNA–Protein interactions for RNA: ENST00000370542.1

LMO4-201, Transcript of LIM domain only 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMO4, Length 1,260 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4-201ENST00000370542 KRTAP10-5P60370 271 aa6.54□□□□□ -1.36
LMO4-201ENST00000370542 KRTAP23-1A1A580 65 aa6.53□□□□□ -1.36
LMO4-201ENST00000370542 LCE4AQ5TA78 99 aa6.5□□□□□ -1.37
LMO4-201ENST00000370542 KRTAP9-9Q9BYP9 154 aa6.48□□□□□ -1.37
LMO4-201ENST00000370542 KRTAP9-4Q9BYQ2 154 aa6.48□□□□□ -1.37
LMO4-201ENST00000370542 CAMK2N1Q7Z7J9 78 aa6.42□□□□□ -1.38
LMO4-201ENST00000370542 SPRR2EP22531 72 aa6.36□□□□□ -1.39
LMO4-201ENST00000370542 SPRR2BP35325 72 aa6.36□□□□□ -1.39
LMO4-201ENST00000370542 SPRR2AP35326 72 aa6.36□□□□□ -1.39
LMO4-201ENST00000370542 TNP1P09430 55 aa6.32□□□□□ -1.4
LMO4-201ENST00000370542 SPRR5A0A1B0GTR4 108 aa6.29□□□□□ -1.4
LMO4-201ENST00000370542 KRTAP4-8A0A0G2JLE6 195 aa6.28□□□□□ -1.4
LMO4-201ENST00000370542 SPRR2FQ96RM1 72 aa6.25□□□□□ -1.41
LMO4-201ENST00000370542 LCE1DQ5T752 114 aa6.22□□□□□ -1.41
LMO4-201ENST00000370542 LCE1AQ5T7P2 110 aa6.22□□□□□ -1.41
LMO4-201ENST00000370542 MT1XP80297 61 aa6.2□□□□□ -1.42
LMO4-201ENST00000370542 SPRR2DP22532 72 aa6.17□□□□□ -1.42
LMO4-201ENST00000370542 PRO2289Q9P1D8 64 aa6.16□□□□□ -1.42
LMO4-201ENST00000370542 KRTAP8-1Q8IUC2 63 aa6.04□□□□□ -1.44
LMO4-201ENST00000370542 DSTQ03001 7570 aaKnown RBP6.03□□□□□ -1.44
LMO4-201ENST00000370542 LCE5AQ5TCM9 118 aa6.03□□□□□ -1.44
LMO4-201ENST00000370542 KRTAP4-7Q9BYR0 210 aa6.02□□□□□ -1.45
LMO4-201ENST00000370542 INE1O15225 51 aa6.01□□□□□ -1.45
LMO4-201ENST00000370542 KRTAP4-9Q9BYQ8 210 aa5.99□□□□□ -1.45
LMO4-201ENST00000370542 KRTAP10-12P60413 245 aa5.9□□□□□ -1.46
LMO4-201ENST00000370542 KRTAP10-7P60409 375 aaPredicted RBP5.88□□□□□ -1.47
LMO4-201ENST00000370542 KRTAP4-11Q9BYQ6 195 aa5.85□□□□□ -1.47
LMO4-201ENST00000370542 KRTAP4-2Q9BYR5 136 aa5.77□□□□□ -1.49
LMO4-201ENST00000370542 LCE3AQ5TA76 89 aa5.73□□□□□ -1.49
LMO4-201ENST00000370542 KRTAP5-10Q6L8G5 202 aa5.73□□□□□ -1.49
LMO4-201ENST00000370542 AHNAK2Q8IVF2 5795 aa5.71□□□□□ -1.5
LMO4-201ENST00000370542 HMCN1Q96RW7 5635 aa5.71□□□□□ -1.5
LMO4-201ENST00000370542 KRTAP5-7Q6L8G8 165 aa5.63□□□□□ -1.51
LMO4-201ENST00000370542 KRTAP19-7Q3SYF9 63 aa5.56□□□□□ -1.52
LMO4-201ENST00000370542 KRTAP12-3P60328 96 aa5.53□□□□□ -1.52
LMO4-201ENST00000370542 MT1EP04732 61 aa5.5□□□□□ -1.53
LMO4-201ENST00000370542 KRTAP19-3Q7Z4W3 81 aa5.48□□□□□ -1.53
LMO4-201ENST00000370542 MT4P47944 62 aa5.46□□□□□ -1.54
LMO4-201ENST00000370542 KRTAP5-3Q6L8H2 238 aa5.37□□□□□ -1.55
LMO4-201ENST00000370542 MT1GP13640 62 aa5.35□□□□□ -1.55
LMO4-201ENST00000370542 KRTAP19-5Q3LI72 72 aa5.32□□□□□ -1.56
LMO4-201ENST00000370542 LCE3CQ5T5A8 94 aa5.24□□□□□ -1.57
LMO4-201ENST00000370542 MT1MQ8N339 61 aa5.24□□□□□ -1.57
LMO4-201ENST00000370542 MT1LQ93083 61 aa5.22□□□□□ -1.57
LMO4-201ENST00000370542 KRTAP5-4Q6L8H1 288 aa5.21□□□□□ -1.58
LMO4-201ENST00000370542 KRTAP4-3Q9BYR4 195 aa5.09□□□□□ -1.59
LMO4-201ENST00000370542 AHNAKQ09666 5890 aaKnown RBP5.05□□□□□ -1.6
LMO4-201ENST00000370542 KRTAP20-2Q3LI61 65 aa4.94□□□□□ -1.62
LMO4-201ENST00000370542 MUC5ACP98088 5654 aa4.94□□□□□ -1.62
LMO4-201ENST00000370542 KRTAP5-5Q701N2 237 aaPredicted RBP4.87□□□□□ -1.63
LMO4-201ENST00000370542 KRTAP9-6A8MVA2 160 aa4.85□□□□□ -1.63
LMO4-201ENST00000370542 MUC5BQ9HC84 5762 aaPredicted RBP4.81□□□□□ -1.64
LMO4-201ENST00000370542 SYNE1Q8NF91 8797 aaKnown RBP4.71□□□□□ -1.66
LMO4-201ENST00000370542 KRTAP12-4P60329 112 aa4.71□□□□□ -1.66
LMO4-201ENST00000370542 KRTAP5-8O75690 187 aa4.65□□□□□ -1.67
LMO4-201ENST00000370542 MT3P25713 68 aa4.51□□□□□ -1.69
LMO4-201ENST00000370542 KRTAP5-2Q701N4 177 aa4.49□□□□□ -1.69
LMO4-201ENST00000370542 MT1AP04731 61 aa4.44□□□□□ -1.7
LMO4-201ENST00000370542 KRTAP6-1Q3LI64 71 aa4.42□□□□□ -1.7
LMO4-201ENST00000370542 OBSCNQ5VST9 7968 aa4.34□□□□□ -1.71
LMO4-201ENST00000370542 KRTAP6-2Q3LI66 62 aa4.23□□□□□ -1.73
LMO4-201ENST00000370542 LCE1FQ5T754 118 aa4.18□□□□□ -1.74
LMO4-201ENST00000370542 LCE3EQ5T5B0 92 aa4.12□□□□□ -1.75
LMO4-201ENST00000370542 KRTAP5-1Q6L8H4 278 aa4.12□□□□□ -1.75
LMO4-201ENST00000370542 LCE3DQ9BYE3 92 aa4.1□□□□□ -1.75
LMO4-201ENST00000370542 LCE1EQ5T753 118 aa4.03□□□□□ -1.76
LMO4-201ENST00000370542 PRM1P04553 51 aa3.96□□□□□ -1.78
LMO4-201ENST00000370542 KRTAP5-11Q6L8G4 156 aa3.95□□□□□ -1.78
LMO4-201ENST00000370542 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.74□□□□□ -1.81
LMO4-201ENST00000370542 LCE1CQ5T751 118 aa3.54□□□□□ -1.84
LMO4-201ENST00000370542 LCE1BQ5T7P3 118 aa3.54□□□□□ -1.84
LMO4-201ENST00000370542 PHGR1C9JFL3 82 aa3.34□□□□□ -1.87
LMO4-201ENST00000370542 KRTAP4-4Q9BYR3 166 aa3.1□□□□□ -1.91
LMO4-201ENST00000370542 KRTAP21-2Q3LI59 83 aa2.95□□□□□ -1.94
LMO4-201ENST00000370542 MUC19Q7Z5P9 8384 aa2.73□□□□□ -1.97
LMO4-201ENST00000370542 KRTAP21-1Q3LI58 79 aa2.63□□□□□ -1.99
LMO4-201ENST00000370542 MUC16Q8WXI7 14507 aa1.89□□□□□ -2.11
Retrieved 77 of 20,778 RNA–protein pairs in 6.5 ms