RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 KRTAP2-4Q9BYR9 128 aa4.87□□□□□ -1.63
COL17A1-202ENST00000369733 KRTAP2-1Q9BYU5 128 aa4.87□□□□□ -1.63
COL17A1-202ENST00000369733 KRTAP19-7Q3SYF9 63 aa4.83□□□□□ -1.64
COL17A1-202ENST00000369733 HMCN2Q8NDA2 5059 aa4.83□□□□□ -1.64
COL17A1-202ENST00000369733 EPPK1P58107 5090 aaKnown RBP4.76□□□□□ -1.65
COL17A1-202ENST00000369733 FAT4Q6V0I7 4981 aa4.73□□□□□ -1.65
COL17A1-202ENST00000369733 KRTAP19-6Q3LI70 58 aa4.72□□□□□ -1.65
COL17A1-202ENST00000369733 UBR4Q5T4S7 5183 aa4.71□□□□□ -1.66
COL17A1-202ENST00000369733 MT3P25713 68 aa4.69□□□□□ -1.66
COL17A1-202ENST00000369733 KRTAP9-6A8MVA2 160 aa4.68□□□□□ -1.66
COL17A1-202ENST00000369733 RNF213Q63HN8 5207 aa4.67□□□□□ -1.66
COL17A1-202ENST00000369733 KRTAP4-9Q9BYQ8 210 aa4.65□□□□□ -1.66
COL17A1-202ENST00000369733 MT1AP04731 61 aa4.57□□□□□ -1.68
COL17A1-202ENST00000369733 SYNE1Q8NF91 8797 aaKnown RBP4.56□□□□□ -1.68
COL17A1-202ENST00000369733 LCE2DQ5TA82 110 aaPredicted RBP4.52□□□□□ -1.69
COL17A1-202ENST00000369733 LCE2AQ5TA79 106 aaPredicted RBP4.5□□□□□ -1.69
COL17A1-202ENST00000369733 MUC2Q02817 5179 aa4.45□□□□□ -1.7
COL17A1-202ENST00000369733 MT4P47944 62 aa4.43□□□□□ -1.7
COL17A1-202ENST00000369733 FSIP2Q5CZC0 6907 aa4.41□□□□□ -1.7
COL17A1-202ENST00000369733 KRTAP6-1Q3LI64 71 aa4.38□□□□□ -1.71
COL17A1-202ENST00000369733 LCE1DQ5T752 114 aa4.35□□□□□ -1.71
COL17A1-202ENST00000369733 LCE1BQ5T7P3 118 aa4.35□□□□□ -1.71
COL17A1-202ENST00000369733 KRTAP6-2Q3LI66 62 aa4.35□□□□□ -1.71
COL17A1-202ENST00000369733 KRTAP9-2Q9BYQ4 174 aa4.29□□□□□ -1.72
COL17A1-202ENST00000369733 KRTAP9-7A8MTY7 169 aa4.29□□□□□ -1.72
COL17A1-202ENST00000369733 SYNE2Q8WXH0 6885 aaKnown RBP4.29□□□□□ -1.72
COL17A1-202ENST00000369733 LCE5AQ5TCM9 118 aa4.26□□□□□ -1.73
COL17A1-202ENST00000369733 KRTAP9-4Q9BYQ2 154 aa4.22□□□□□ -1.73
COL17A1-202ENST00000369733 OBSCNQ5VST9 7968 aa4.2□□□□□ -1.74
COL17A1-202ENST00000369733 KRTAP9-6A0A140TA67 174 aa4.18□□□□□ -1.74
COL17A1-202ENST00000369733 LCE1AQ5T7P2 110 aa4.09□□□□□ -1.75
COL17A1-202ENST00000369733 FCGBPQ9Y6R7 5405 aaPredicted RBP4.07□□□□□ -1.76
COL17A1-202ENST00000369733 KMT2DO14686 5537 aa4.07□□□□□ -1.76
COL17A1-202ENST00000369733 USH2AO75445 5202 aa4.01□□□□□ -1.77
COL17A1-202ENST00000369733 KRTAP2-2Q9BYT5 123 aa3.93□□□□□ -1.78
COL17A1-202ENST00000369733 KRTAP6-3Q3LI67 103 aa3.86□□□□□ -1.79
COL17A1-202ENST00000369733 DSTQ03001 7570 aaKnown RBP3.84□□□□□ -1.79
COL17A1-202ENST00000369733 KRTAP20-1Q3LI63 56 aa3.83□□□□□ -1.8
COL17A1-202ENST00000369733 LCE4AQ5TA78 99 aa3.81□□□□□ -1.8
COL17A1-202ENST00000369733 LCE1EQ5T753 118 aa3.77□□□□□ -1.81
COL17A1-202ENST00000369733 SSPOA2VEC9 5147 aa3.72□□□□□ -1.81
COL17A1-202ENST00000369733 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.7□□□□□ -1.82
COL17A1-202ENST00000369733 MUC12Q9UKN1 5478 aa3.64□□□□□ -1.83
COL17A1-202ENST00000369733 KRTAP4-11Q9BYQ6 195 aa3.6□□□□□ -1.83
COL17A1-202ENST00000369733 KRTAP5-5Q701N2 237 aaPredicted RBP3.58□□□□□ -1.84
COL17A1-202ENST00000369733 MACF1Q9UPN3 7388 aaKnown RBP3.55□□□□□ -1.84
COL17A1-202ENST00000369733 LCE1CQ5T751 118 aa3.53□□□□□ -1.84
COL17A1-202ENST00000369733 LCE1FQ5T754 118 aa3.53□□□□□ -1.84
COL17A1-202ENST00000369733 KRTAP5-9P26371 169 aa3.51□□□□□ -1.85
COL17A1-202ENST00000369733 KRTAP4-6Q9BYQ5 205 aa3.43□□□□□ -1.86
COL17A1-202ENST00000369733 KRTAP20-2Q3LI61 65 aa3.36□□□□□ -1.87
COL17A1-202ENST00000369733 MUC19Q7Z5P9 8384 aa3.28□□□□□ -1.88
COL17A1-202ENST00000369733 NEBP20929 6669 aa3.24□□□□□ -1.89
COL17A1-202ENST00000369733 KRTAP9-9Q9BYP9 154 aa3.16□□□□□ -1.9
COL17A1-202ENST00000369733 KRTAP4-4Q9BYR3 166 aa3.16□□□□□ -1.9
COL17A1-202ENST00000369733 MDN1Q9NU22 5596 aa3.13□□□□□ -1.91
COL17A1-202ENST00000369733 GPR98Q8WXG9 6306 aa3.11□□□□□ -1.91
COL17A1-202ENST00000369733 KRTAP5-4Q6L8H1 288 aa3.07□□□□□ -1.92
COL17A1-202ENST00000369733 KRTAP4-12Q9BQ66 201 aa2.98□□□□□ -1.93
COL17A1-202ENST00000369733 KRTAP4-2Q9BYR5 136 aa2.98□□□□□ -1.93
COL17A1-202ENST00000369733 MUC5ACP98088 5654 aa2.82□□□□□ -1.96
COL17A1-202ENST00000369733 KRTAP5-10Q6L8G5 202 aa2.75□□□□□ -1.97
COL17A1-202ENST00000369733 KRTAP5-3Q6L8H2 238 aa2.66□□□□□ -1.98
COL17A1-202ENST00000369733 HMCN1Q96RW7 5635 aa2.63□□□□□ -1.99
COL17A1-202ENST00000369733 KRTAP5-2Q701N4 177 aa2.58□□□□□ -2
COL17A1-202ENST00000369733 AHNAK2Q8IVF2 5795 aa2.48□□□□□ -2.01
COL17A1-202ENST00000369733 KRTAP5-8O75690 187 aa2.39□□□□□ -2.03
COL17A1-202ENST00000369733 KRTAP5-1Q6L8H4 278 aa2.37□□□□□ -2.03
COL17A1-202ENST00000369733 KRTAP21-2Q3LI59 83 aa2.31□□□□□ -2.04
COL17A1-202ENST00000369733 MUC5BQ9HC84 5762 aaPredicted RBP2.3□□□□□ -2.04
COL17A1-202ENST00000369733 KRTAP21-1Q3LI58 79 aa2.28□□□□□ -2.05
COL17A1-202ENST00000369733 KRTAP5-11Q6L8G4 156 aa2.27□□□□□ -2.05
COL17A1-202ENST00000369733 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.11□□□□□ -2.07
COL17A1-202ENST00000369733 PHGR1C9JFL3 82 aa2.03□□□□□ -2.08
COL17A1-202ENST00000369733 AHNAKQ09666 5890 aaKnown RBP2.03□□□□□ -2.09
COL17A1-202ENST00000369733 KRTAP5-7Q6L8G8 165 aa1.85□□□□□ -2.11
COL17A1-202ENST00000369733 MUC16Q8WXI7 14507 aa1.33□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 105.5 ms