RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 MUC12Q9UKN1 5478 aa6.63□□□□□ -1.35
CLN3-204ENST00000357857 NEBP20929 6669 aa6.57□□□□□ -1.36
CLN3-204ENST00000357857 KRTAP19-4Q3LI73 84 aa6.56□□□□□ -1.36
CLN3-204ENST00000357857 KRTAP19-3Q7Z4W3 81 aa6.56□□□□□ -1.36
CLN3-204ENST00000357857 LCE3CQ5T5A8 94 aa6.53□□□□□ -1.36
CLN3-204ENST00000357857 NDUFAF8A1L188 74 aa6.51□□□□□ -1.37
CLN3-204ENST00000357857 MT1GP13640 62 aa6.49□□□□□ -1.37
CLN3-204ENST00000357857 SPRR2EP22531 72 aa6.47□□□□□ -1.37
CLN3-204ENST00000357857 SPRR2BP35325 72 aa6.47□□□□□ -1.37
CLN3-204ENST00000357857 SPRR2AP35326 72 aa6.47□□□□□ -1.37
CLN3-204ENST00000357857 MDN1Q9NU22 5596 aa6.46□□□□□ -1.37
CLN3-204ENST00000357857 SPRR5A0A1B0GTR4 108 aa6.45□□□□□ -1.38
CLN3-204ENST00000357857 LCE1AQ5T7P2 110 aa6.45□□□□□ -1.38
CLN3-204ENST00000357857 LCE5AQ5TCM9 118 aa6.45□□□□□ -1.38
CLN3-204ENST00000357857 KRTAP4-7Q9BYR0 210 aa6.43□□□□□ -1.38
CLN3-204ENST00000357857 MT1MQ8N339 61 aa6.42□□□□□ -1.38
CLN3-204ENST00000357857 KRTAP20-1Q3LI63 56 aa6.4□□□□□ -1.38
CLN3-204ENST00000357857 KRTAP2-3P0C7H8 128 aa6.29□□□□□ -1.4
CLN3-204ENST00000357857 KRTAP2-4Q9BYR9 128 aa6.29□□□□□ -1.4
CLN3-204ENST00000357857 KRTAP4-3Q9BYR4 195 aa6.28□□□□□ -1.4
CLN3-204ENST00000357857 LUZP6Q538Z0 58 aa6.28□□□□□ -1.4
CLN3-204ENST00000357857 SPRR2DP22532 72 aa6.25□□□□□ -1.41
CLN3-204ENST00000357857 KRTAP9-6A8MVA2 160 aa6.16□□□□□ -1.42
CLN3-204ENST00000357857 A0A0A0MQY5 61 aa6.12□□□□□ -1.43
CLN3-204ENST00000357857 KRTAP2-2Q9BYT5 123 aa6.11□□□□□ -1.43
CLN3-204ENST00000357857 KRTAP2-1Q9BYU5 128 aa6.11□□□□□ -1.43
CLN3-204ENST00000357857 LCE3BQ5TA77 95 aa6.07□□□□□ -1.44
CLN3-204ENST00000357857 LOC100996750A0A140TA64 210 aa6.05□□□□□ -1.44
CLN3-204ENST00000357857 DSTQ03001 7570 aaKnown RBP6□□□□□ -1.45
CLN3-204ENST00000357857 KRTAP5-5Q701N2 237 aaPredicted RBP5.79□□□□□ -1.48
CLN3-204ENST00000357857 MT1AP04731 61 aa5.66□□□□□ -1.5
CLN3-204ENST00000357857 KRTAP6-1Q3LI64 71 aa5.61□□□□□ -1.51
CLN3-204ENST00000357857 INE1O15225 51 aa5.57□□□□□ -1.52
CLN3-204ENST00000357857 KRTAP4-9Q9BYQ8 210 aa5.57□□□□□ -1.52
CLN3-204ENST00000357857 KRTAP5-4Q6L8H1 288 aa5.56□□□□□ -1.52
CLN3-204ENST00000357857 LCE4AQ5TA78 99 aa5.55□□□□□ -1.52
CLN3-204ENST00000357857 LCE1DQ5T752 114 aa5.46□□□□□ -1.54
CLN3-204ENST00000357857 MT4P47944 62 aa5.45□□□□□ -1.54
CLN3-204ENST00000357857 SYNE1Q8NF91 8797 aaKnown RBP5.44□□□□□ -1.54
CLN3-204ENST00000357857 KRTAP12-4P60329 112 aa5.4□□□□□ -1.54
CLN3-204ENST00000357857 KRTAP9-4Q9BYQ2 154 aa5.38□□□□□ -1.55
CLN3-204ENST00000357857 KRTAP4-6Q9BYQ5 205 aa5.31□□□□□ -1.56
CLN3-204ENST00000357857 HMCN1Q96RW7 5635 aa5.3□□□□□ -1.56
CLN3-204ENST00000357857 KRTAP20-2Q3LI61 65 aa5.21□□□□□ -1.58
CLN3-204ENST00000357857 KRTAP6-2Q3LI66 62 aa5.18□□□□□ -1.58
CLN3-204ENST00000357857 GPR98Q8WXG9 6306 aa5.14□□□□□ -1.59
CLN3-204ENST00000357857 MT3P25713 68 aa5.14□□□□□ -1.59
CLN3-204ENST00000357857 KRTAP5-2Q701N4 177 aa5.03□□□□□ -1.6
CLN3-204ENST00000357857 KRTAP5-3Q6L8H2 238 aa5.02□□□□□ -1.61
CLN3-204ENST00000357857 AHNAK2Q8IVF2 5795 aa5.01□□□□□ -1.61
CLN3-204ENST00000357857 KRTAP5-10Q6L8G5 202 aa4.95□□□□□ -1.62
CLN3-204ENST00000357857 LCE3DQ9BYE3 92 aa4.89□□□□□ -1.63
CLN3-204ENST00000357857 KRTAP5-7Q6L8G8 165 aa4.75□□□□□ -1.65
CLN3-204ENST00000357857 LCE3EQ5T5B0 92 aa4.75□□□□□ -1.65
CLN3-204ENST00000357857 OBSCNQ5VST9 7968 aa4.65□□□□□ -1.67
CLN3-204ENST00000357857 KRTAP4-11Q9BYQ6 195 aa4.64□□□□□ -1.67
CLN3-204ENST00000357857 LCE1EQ5T753 118 aa4.47□□□□□ -1.69
CLN3-204ENST00000357857 KRTAP5-8O75690 187 aa4.46□□□□□ -1.69
CLN3-204ENST00000357857 KRTAP5-1Q6L8H4 278 aa4.36□□□□□ -1.71
CLN3-204ENST00000357857 KRTAP9-9Q9BYP9 154 aa4.25□□□□□ -1.73
CLN3-204ENST00000357857 LCE1BQ5T7P3 118 aa4.21□□□□□ -1.74
CLN3-204ENST00000357857 KRTAP4-2Q9BYR5 136 aa4.18□□□□□ -1.74
CLN3-204ENST00000357857 LCE1CQ5T751 118 aa4.16□□□□□ -1.74
CLN3-204ENST00000357857 MUC5ACP98088 5654 aa4.15□□□□□ -1.74
CLN3-204ENST00000357857 PRM1P04553 51 aa4.11□□□□□ -1.75
CLN3-204ENST00000357857 MUC5BQ9HC84 5762 aaPredicted RBP4.1□□□□□ -1.75
CLN3-204ENST00000357857 AHNAKQ09666 5890 aaKnown RBP4.04□□□□□ -1.76
CLN3-204ENST00000357857 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.89□□□□□ -1.79
CLN3-204ENST00000357857 KRTAP5-11Q6L8G4 156 aa3.68□□□□□ -1.82
CLN3-204ENST00000357857 KRTAP21-2Q3LI59 83 aa3.67□□□□□ -1.82
CLN3-204ENST00000357857 KRTAP4-12Q9BQ66 201 aa3.5□□□□□ -1.85
CLN3-204ENST00000357857 LCE1FQ5T754 118 aa3.37□□□□□ -1.87
CLN3-204ENST00000357857 KRTAP4-4Q9BYR3 166 aa3.27□□□□□ -1.89
CLN3-204ENST00000357857 PHGR1C9JFL3 82 aa3.16□□□□□ -1.9
CLN3-204ENST00000357857 MUC19Q7Z5P9 8384 aa2.76□□□□□ -1.97
CLN3-204ENST00000357857 KRTAP21-1Q3LI58 79 aa2.48□□□□□ -2.01
CLN3-204ENST00000357857 MUC16Q8WXI7 14507 aa2.09□□□□□ -2.07
Retrieved 77 of 20,778 RNA–protein pairs in 146.5 ms