RNA–Protein interactions for RNA: ENST00000334218.9

CDC42BPA-201, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 5 BASIC

Gene CDC42BPA, Length 10,134 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-201ENST00000334218 MT1AP04731 61 aa1.85□□□□□ -2.11
CDC42BPA-201ENST00000334218 KRTAP6-3Q3LI67 103 aa1.85□□□□□ -2.11
CDC42BPA-201ENST00000334218 MT1XP80297 61 aa1.84□□□□□ -2.11
CDC42BPA-201ENST00000334218 LCE1AQ5T7P2 110 aa1.82□□□□□ -2.12
CDC42BPA-201ENST00000334218 FAT4Q6V0I7 4981 aa1.82□□□□□ -2.12
CDC42BPA-201ENST00000334218 MT1EP04732 61 aa1.81□□□□□ -2.12
CDC42BPA-201ENST00000334218 KRTAP19-3Q7Z4W3 81 aa1.79□□□□□ -2.12
CDC42BPA-201ENST00000334218 KRTAP2-3P0C7H8 128 aa1.79□□□□□ -2.12
CDC42BPA-201ENST00000334218 KRTAP2-4Q9BYR9 128 aa1.79□□□□□ -2.12
CDC42BPA-201ENST00000334218 KRTAP20-1Q3LI63 56 aa1.78□□□□□ -2.12
CDC42BPA-201ENST00000334218 KRTAP2-1Q9BYU5 128 aa1.78□□□□□ -2.12
CDC42BPA-201ENST00000334218 HMCN2Q8NDA2 5059 aa1.78□□□□□ -2.12
CDC42BPA-201ENST00000334218 MACF1Q9UPN3 7388 aaKnown RBP1.78□□□□□ -2.12
CDC42BPA-201ENST00000334218 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.76□□□□□ -2.13
CDC42BPA-201ENST00000334218 SYNE2Q8WXH0 6885 aaKnown RBP1.76□□□□□ -2.13
CDC42BPA-201ENST00000334218 KRTAP2-2Q9BYT5 123 aa1.73□□□□□ -2.13
CDC42BPA-201ENST00000334218 KRTAP4-8A0A0G2JLE6 195 aa1.72□□□□□ -2.13
CDC42BPA-201ENST00000334218 KRTAP4-8Q9BYQ9 185 aa1.72□□□□□ -2.13
CDC42BPA-201ENST00000334218 MUC2Q02817 5179 aa1.7□□□□□ -2.14
CDC42BPA-201ENST00000334218 FSIP2Q5CZC0 6907 aa1.69□□□□□ -2.14
CDC42BPA-201ENST00000334218 LCE4AQ5TA78 99 aa1.69□□□□□ -2.14
CDC42BPA-201ENST00000334218 OBSCNQ5VST9 7968 aa1.67□□□□□ -2.14
CDC42BPA-201ENST00000334218 SYNE1Q8NF91 8797 aaKnown RBP1.67□□□□□ -2.14
CDC42BPA-201ENST00000334218 MT1MQ8N339 61 aa1.66□□□□□ -2.14
CDC42BPA-201ENST00000334218 USH2AO75445 5202 aa1.65□□□□□ -2.15
CDC42BPA-201ENST00000334218 LCE5AQ5TCM9 118 aa1.63□□□□□ -2.15
CDC42BPA-201ENST00000334218 HMCN1Q96RW7 5635 aa1.61□□□□□ -2.15
CDC42BPA-201ENST00000334218 DSTQ03001 7570 aaKnown RBP1.6□□□□□ -2.15
CDC42BPA-201ENST00000334218 KRTAP6-2Q3LI66 62 aa1.6□□□□□ -2.15
CDC42BPA-201ENST00000334218 MUC5BQ9HC84 5762 aaPredicted RBP1.59□□□□□ -2.15
CDC42BPA-201ENST00000334218 MT4P47944 62 aa1.59□□□□□ -2.16
CDC42BPA-201ENST00000334218 KRTAP5-9P26371 169 aa1.58□□□□□ -2.16
CDC42BPA-201ENST00000334218 GPR98Q8WXG9 6306 aa1.58□□□□□ -2.16
CDC42BPA-201ENST00000334218 KRTAP19-7Q3SYF9 63 aa1.58□□□□□ -2.16
CDC42BPA-201ENST00000334218 NEBP20929 6669 aa1.58□□□□□ -2.16
CDC42BPA-201ENST00000334218 KRTAP9-6A8MVA2 160 aa1.56□□□□□ -2.16
CDC42BPA-201ENST00000334218 KRTAP9-4Q9BYQ2 154 aa1.52□□□□□ -2.17
CDC42BPA-201ENST00000334218 LCE1DQ5T752 114 aa1.51□□□□□ -2.17
CDC42BPA-201ENST00000334218 LCE1BQ5T7P3 118 aa1.5□□□□□ -2.17
CDC42BPA-201ENST00000334218 KRTAP9-9Q9BYP9 154 aa1.49□□□□□ -2.17
CDC42BPA-201ENST00000334218 MDN1Q9NU22 5596 aa1.49□□□□□ -2.17
CDC42BPA-201ENST00000334218 SSPOA2VEC9 5147 aa1.47□□□□□ -2.17
CDC42BPA-201ENST00000334218 LCE1FQ5T754 118 aa1.46□□□□□ -2.18
CDC42BPA-201ENST00000334218 KRTAP4-7Q9BYR0 210 aa1.46□□□□□ -2.18
CDC42BPA-201ENST00000334218 MUC12Q9UKN1 5478 aa1.44□□□□□ -2.18
CDC42BPA-201ENST00000334218 KRTAP4-3Q9BYR4 195 aa1.42□□□□□ -2.18
CDC42BPA-201ENST00000334218 KRTAP4-9Q9BYQ8 210 aa1.42□□□□□ -2.18
CDC42BPA-201ENST00000334218 LCE1EQ5T753 118 aa1.4□□□□□ -2.19
CDC42BPA-201ENST00000334218 KMT2DO14686 5537 aa1.4□□□□□ -2.19
CDC42BPA-201ENST00000334218 FCGBPQ9Y6R7 5405 aaPredicted RBP1.39□□□□□ -2.19
CDC42BPA-201ENST00000334218 LOC100996750A0A140TA64 210 aa1.38□□□□□ -2.19
CDC42BPA-201ENST00000334218 LCE1CQ5T751 118 aa1.37□□□□□ -2.19
CDC42BPA-201ENST00000334218 KRTAP6-1Q3LI64 71 aa1.34□□□□□ -2.2
CDC42BPA-201ENST00000334218 KRTAP20-2Q3LI61 65 aa1.31□□□□□ -2.2
CDC42BPA-201ENST00000334218 KRTAP5-4Q6L8H1 288 aa1.31□□□□□ -2.2
CDC42BPA-201ENST00000334218 KRTAP4-6Q9BYQ5 205 aa1.3□□□□□ -2.2
CDC42BPA-201ENST00000334218 KRTAP4-11Q9BYQ6 195 aa1.27□□□□□ -2.21
CDC42BPA-201ENST00000334218 KRTAP4-2Q9BYR5 136 aa1.25□□□□□ -2.21
CDC42BPA-201ENST00000334218 AHNAKQ09666 5890 aaKnown RBP1.23□□□□□ -2.21
CDC42BPA-201ENST00000334218 KRTAP5-3Q6L8H2 238 aa1.22□□□□□ -2.21
CDC42BPA-201ENST00000334218 AHNAK2Q8IVF2 5795 aa1.2□□□□□ -2.22
CDC42BPA-201ENST00000334218 KRTAP5-5Q701N2 237 aaPredicted RBP1.17□□□□□ -2.22
CDC42BPA-201ENST00000334218 MUC19Q7Z5P9 8384 aa1.17□□□□□ -2.22
CDC42BPA-201ENST00000334218 KRTAP4-12Q9BQ66 201 aa1.12□□□□□ -2.23
CDC42BPA-201ENST00000334218 MUC5ACP98088 5654 aa1.06□□□□□ -2.24
CDC42BPA-201ENST00000334218 KRTAP5-2Q701N4 177 aa1.05□□□□□ -2.24
CDC42BPA-201ENST00000334218 KRTAP5-8O75690 187 aa1.04□□□□□ -2.24
CDC42BPA-201ENST00000334218 KRTAP5-7Q6L8G8 165 aa1.01□□□□□ -2.25
CDC42BPA-201ENST00000334218 KRTAP4-4Q9BYR3 166 aa1.01□□□□□ -2.25
CDC42BPA-201ENST00000334218 PHGR1C9JFL3 82 aa0.99□□□□□ -2.25
CDC42BPA-201ENST00000334218 KRTAP5-10Q6L8G5 202 aa0.97□□□□□ -2.25
CDC42BPA-201ENST00000334218 KRTAP5-11Q6L8G4 156 aa0.93□□□□□ -2.26
CDC42BPA-201ENST00000334218 KRTAP21-1Q3LI58 79 aa0.93□□□□□ -2.26
CDC42BPA-201ENST00000334218 KRTAP5-1Q6L8H4 278 aa0.91□□□□□ -2.26
CDC42BPA-201ENST00000334218 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.87□□□□□ -2.27
CDC42BPA-201ENST00000334218 MUC16Q8WXI7 14507 aa0.76□□□□□ -2.29
CDC42BPA-201ENST00000334218 KRTAP21-2Q3LI59 83 aa0.75□□□□□ -2.29
Retrieved 77 of 20,778 RNA–protein pairs in 166.5 ms