RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 C10orf95Q9H7T3 257 aa0.99□□□□□ -2.25
HMGB1-201ENST00000326004 KMT2DO14686 5537 aa0.99□□□□□ -2.25
HMGB1-201ENST00000326004 GVQW2A0A096LPI5 108 aaPredicted RBP0.98□□□□□ -2.25
HMGB1-201ENST00000326004 DEFB130BP0DP73 79 aa0.98□□□□□ -2.25
HMGB1-201ENST00000326004 DEFB130AP0DP74 79 aa0.98□□□□□ -2.25
HMGB1-201ENST00000326004 DEFB131AP59861 70 aa0.98□□□□□ -2.25
HMGB1-201ENST00000326004 KRTAP10-4P60372 401 aaPredicted RBP0.98□□□□□ -2.25
HMGB1-201ENST00000326004 USMG5Q96IX5 58 aa0.98□□□□□ -2.25
HMGB1-201ENST00000326004 MRPL34Q9BQ48 92 aaKnown RBP0.98□□□□□ -2.25
HMGB1-201ENST00000326004 NOP10Q9NPE3 64 aaKnown RBP0.98□□□□□ -2.25
HMGB1-201ENST00000326004 SPINK1P00995 79 aa0.97□□□□□ -2.25
HMGB1-201ENST00000326004 HTN3P15516 51 aa0.97□□□□□ -2.25
HMGB1-201ENST00000326004 H1FX-AS1Q4G0G2 97 aa0.97□□□□□ -2.25
HMGB1-201ENST00000326004 KRTAP4-1Q9BYQ7 146 aa0.97□□□□□ -2.25
HMGB1-201ENST00000326004 DNAH8Q96JB1 4490 aa0.97□□□□□ -2.25
HMGB1-201ENST00000326004 A0A096LPF7 62 aa0.96□□□□□ -2.26
HMGB1-201ENST00000326004 H3BUA1 57 aa0.96□□□□□ -2.26
HMGB1-201ENST00000326004 PRLHP81277 87 aa0.96□□□□□ -2.26
HMGB1-201ENST00000326004 MUC12Q9UKN1 5478 aa0.96□□□□□ -2.26
HMGB1-201ENST00000326004 MT1HP80294 61 aa0.95□□□□□ -2.26
HMGB1-201ENST00000326004 PLAC4Q8WY50 150 aa0.95□□□□□ -2.26
HMGB1-201ENST00000326004 A0A096LNI7 61 aa0.94□□□□□ -2.26
HMGB1-201ENST00000326004 SPRR1AP35321 89 aa0.94□□□□□ -2.26
HMGB1-201ENST00000326004 AHNAK2Q8IVF2 5795 aa0.93□□□□□ -2.26
HMGB1-201ENST00000326004 A0A0D9SG42 100 aa0.92□□□□□ -2.26
HMGB1-201ENST00000326004 RPL37P61927 97 aaKnown RBP0.92□□□□□ -2.26
HMGB1-201ENST00000326004 MUC17Q685J3 4493 aa0.91□□□□□ -2.26
HMGB1-201ENST00000326004 SPART-AS1P0CW21 52 aa0.91□□□□□ -2.26
HMGB1-201ENST00000326004 SPRR1BP22528 89 aa0.91□□□□□ -2.26
HMGB1-201ENST00000326004 COX6B2Q6YFQ2 88 aa0.91□□□□□ -2.26
HMGB1-201ENST00000326004 PRO0255Q9UI72 69 aa0.91□□□□□ -2.26
HMGB1-201ENST00000326004 SPRR2EP22531 72 aa0.9□□□□□ -2.27
HMGB1-201ENST00000326004 SPRR2BP35325 72 aa0.9□□□□□ -2.27
HMGB1-201ENST00000326004 SPRR2AP35326 72 aa0.9□□□□□ -2.27
HMGB1-201ENST00000326004 KRTAP19-6Q3LI70 58 aa0.9□□□□□ -2.27
HMGB1-201ENST00000326004 KRTAP5-10Q6L8G5 202 aa0.9□□□□□ -2.27
HMGB1-201ENST00000326004 SPINK6Q6UWN8 80 aa0.9□□□□□ -2.27
HMGB1-201ENST00000326004 S4R3F8 94 aa0.9□□□□□ -2.27
HMGB1-201ENST00000326004 DSTQ03001 7570 aaKnown RBP0.9□□□□□ -2.27
HMGB1-201ENST00000326004 SPRR2DP22532 72 aa0.89□□□□□ -2.27
HMGB1-201ENST00000326004 AHNAKQ09666 5890 aaKnown RBP0.86□□□□□ -2.27
HMGB1-201ENST00000326004 MDN1Q9NU22 5596 aa0.85□□□□□ -2.27
HMGB1-201ENST00000326004 SPRR2FQ96RM1 72 aa0.84□□□□□ -2.27
HMGB1-201ENST00000326004 KRTAP19-2Q3LHN2 52 aa0.83□□□□□ -2.28
HMGB1-201ENST00000326004 LINC01556Q5JQF7 62 aa0.83□□□□□ -2.28
HMGB1-201ENST00000326004 MT4P47944 62 aa0.81□□□□□ -2.28
HMGB1-201ENST00000326004 MUC5BQ9HC84 5762 aaPredicted RBP0.81□□□□□ -2.28
HMGB1-201ENST00000326004 FLGP20930 4061 aaPredicted RBP0.8□□□□□ -2.28
HMGB1-201ENST00000326004 H3BNG1 76 aa0.8□□□□□ -2.28
HMGB1-201ENST00000326004 MT2AP02795 61 aa0.79□□□□□ -2.28
HMGB1-201ENST00000326004 MT1FP04733 61 aa0.79□□□□□ -2.28
HMGB1-201ENST00000326004 M0QZ58 72 aa0.77□□□□□ -2.29
HMGB1-201ENST00000326004 MUC5ACP98088 5654 aa0.76□□□□□ -2.29
HMGB1-201ENST00000326004 C9orf92A6NGG3 77 aa0.75□□□□□ -2.29
HMGB1-201ENST00000326004 KRTAP8-1Q8IUC2 63 aa0.73□□□□□ -2.29
HMGB1-201ENST00000326004 MUC16Q8WXI7 14507 aa0.71□□□□□ -2.3
HMGB1-201ENST00000326004 TNP1P09430 55 aa0.7□□□□□ -2.3
HMGB1-201ENST00000326004 RPS29P62273 56 aaKnown RBP0.67□□□□□ -2.3
HMGB1-201ENST00000326004 SYNE1Q8NF91 8797 aaKnown RBP0.66□□□□□ -2.3
HMGB1-201ENST00000326004 KRTAP20-2Q3LI61 65 aa0.63□□□□□ -2.31
HMGB1-201ENST00000326004 MT1BP07438 61 aa0.61□□□□□ -2.31
HMGB1-201ENST00000326004 PHGR1C9JFL3 82 aa0.59□□□□□ -2.31
HMGB1-201ENST00000326004 KRTAP19-3Q7Z4W3 81 aa0.59□□□□□ -2.31
HMGB1-201ENST00000326004 PRM1P04553 51 aa0.56□□□□□ -2.32
HMGB1-201ENST00000326004 KRTAP19-8Q3LI54 63 aa0.56□□□□□ -2.32
HMGB1-201ENST00000326004 KRTAP19-5Q3LI72 72 aa0.54□□□□□ -2.32
HMGB1-201ENST00000326004 SPRR2GQ9BYE4 73 aa0.51□□□□□ -2.33
HMGB1-201ENST00000326004 MT1GP13640 62 aa0.5□□□□□ -2.33
HMGB1-201ENST00000326004 MT1XP80297 61 aa0.5□□□□□ -2.33
HMGB1-201ENST00000326004 KRTAP6-2Q3LI66 62 aa0.48□□□□□ -2.33
HMGB1-201ENST00000326004 MT1MQ8N339 61 aa0.48□□□□□ -2.33
HMGB1-201ENST00000326004 MT1AP04731 61 aa0.47□□□□□ -2.33
HMGB1-201ENST00000326004 MT1EP04732 61 aa0.47□□□□□ -2.33
HMGB1-201ENST00000326004 MT1LQ93083 61 aa0.45□□□□□ -2.34
HMGB1-201ENST00000326004 KRTAP19-7Q3SYF9 63 aa0.44□□□□□ -2.34
HMGB1-201ENST00000326004 KRTAP21-1Q3LI58 79 aa0.43□□□□□ -2.34
HMGB1-201ENST00000326004 KRTAP6-1Q3LI64 71 aa0.39□□□□□ -2.35
Retrieved 77 of 20,778 RNA–protein pairs in 8.5 ms