RNA–Protein interactions for RNA: ENST00000318988.10

CTDNEP1-201, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,549 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-201ENST00000318988 SPRR2EP22531 72 aa9.81□□□□□ -0.84
CTDNEP1-201ENST00000318988 SPRR2BP35325 72 aa9.81□□□□□ -0.84
CTDNEP1-201ENST00000318988 SPRR2AP35326 72 aa9.81□□□□□ -0.84
CTDNEP1-201ENST00000318988 MT1LQ93083 61 aa9.78□□□□□ -0.84
CTDNEP1-201ENST00000318988 LCE1AQ5T7P2 110 aa9.76□□□□□ -0.85
CTDNEP1-201ENST00000318988 KRTAP19-3Q7Z4W3 81 aa9.76□□□□□ -0.85
CTDNEP1-201ENST00000318988 MDN1Q9NU22 5596 aa9.7□□□□□ -0.86
CTDNEP1-201ENST00000318988 MT1GP13640 62 aa9.66□□□□□ -0.86
CTDNEP1-201ENST00000318988 KRTAP19-4Q3LI73 84 aa9.61□□□□□ -0.87
CTDNEP1-201ENST00000318988 LCE5AQ5TCM9 118 aa9.61□□□□□ -0.87
CTDNEP1-201ENST00000318988 MT1MQ8N339 61 aa9.49□□□□□ -0.89
CTDNEP1-201ENST00000318988 SPRR2DP22532 72 aa9.46□□□□□ -0.89
CTDNEP1-201ENST00000318988 LCE3CQ5T5A8 94 aa9.46□□□□□ -0.9
CTDNEP1-201ENST00000318988 KRTAP4-7Q9BYR0 210 aa9.37□□□□□ -0.91
CTDNEP1-201ENST00000318988 KRTAP20-1Q3LI63 56 aa9.25□□□□□ -0.93
CTDNEP1-201ENST00000318988 KRTAP4-3Q9BYR4 195 aa9.25□□□□□ -0.93
CTDNEP1-201ENST00000318988 LCE3BQ5TA77 95 aa9.1□□□□□ -0.95
CTDNEP1-201ENST00000318988 KRTAP2-3P0C7H8 128 aa9.05□□□□□ -0.96
CTDNEP1-201ENST00000318988 KRTAP2-4Q9BYR9 128 aa9.05□□□□□ -0.96
CTDNEP1-201ENST00000318988 DSTQ03001 7570 aaKnown RBP9.04□□□□□ -0.96
CTDNEP1-201ENST00000318988 SPRR5A0A1B0GTR4 108 aa8.96□□□□□ -0.97
CTDNEP1-201ENST00000318988 KRTAP9-6A8MVA2 160 aa8.84□□□□□ -0.99
CTDNEP1-201ENST00000318988 LOC100996750A0A140TA64 210 aa8.83□□□□□ -1
CTDNEP1-201ENST00000318988 KRTAP2-2Q9BYT5 123 aa8.83□□□□□ -1
CTDNEP1-201ENST00000318988 KRTAP2-1Q9BYU5 128 aa8.83□□□□□ -1
CTDNEP1-201ENST00000318988 LUZP6Q538Z0 58 aa8.63□□□□□ -1.03
CTDNEP1-201ENST00000318988 KRTAP5-5Q701N2 237 aaPredicted RBP8.55□□□□□ -1.04
CTDNEP1-201ENST00000318988 LCE4AQ5TA78 99 aa8.39□□□□□ -1.07
CTDNEP1-201ENST00000318988 KRTAP5-4Q6L8H1 288 aa8.38□□□□□ -1.07
CTDNEP1-201ENST00000318988 MT1AP04731 61 aa8.34□□□□□ -1.07
CTDNEP1-201ENST00000318988 NDUFAF8A1L188 74 aa8.25□□□□□ -1.09
CTDNEP1-201ENST00000318988 KRTAP6-1Q3LI64 71 aa8.24□□□□□ -1.09
CTDNEP1-201ENST00000318988 MT4P47944 62 aa8.2□□□□□ -1.1
CTDNEP1-201ENST00000318988 KRTAP4-9Q9BYQ8 210 aa8.19□□□□□ -1.1
CTDNEP1-201ENST00000318988 KRTAP12-4P60329 112 aa8.18□□□□□ -1.1
CTDNEP1-201ENST00000318988 LCE1DQ5T752 114 aa8.1□□□□□ -1.11
CTDNEP1-201ENST00000318988 SYNE1Q8NF91 8797 aaKnown RBP8.08□□□□□ -1.12
CTDNEP1-201ENST00000318988 GPR98Q8WXG9 6306 aa8.07□□□□□ -1.12
CTDNEP1-201ENST00000318988 KRTAP4-6Q9BYQ5 205 aa8.03□□□□□ -1.12
CTDNEP1-201ENST00000318988 KRTAP9-4Q9BYQ2 154 aa7.96□□□□□ -1.14
CTDNEP1-201ENST00000318988 HMCN1Q96RW7 5635 aa7.91□□□□□ -1.14
CTDNEP1-201ENST00000318988 KRTAP20-2Q3LI61 65 aa7.88□□□□□ -1.15
CTDNEP1-201ENST00000318988 KRTAP6-2Q3LI66 62 aa7.68□□□□□ -1.18
CTDNEP1-201ENST00000318988 MT3P25713 68 aa7.62□□□□□ -1.19
CTDNEP1-201ENST00000318988 KRTAP5-3Q6L8H2 238 aa7.57□□□□□ -1.2
CTDNEP1-201ENST00000318988 AHNAK2Q8IVF2 5795 aa7.57□□□□□ -1.2
CTDNEP1-201ENST00000318988 KRTAP5-2Q701N4 177 aa7.52□□□□□ -1.2
CTDNEP1-201ENST00000318988 A0A0A0MQY5 61 aa7.31□□□□□ -1.24
CTDNEP1-201ENST00000318988 KRTAP5-10Q6L8G5 202 aa7.27□□□□□ -1.25
CTDNEP1-201ENST00000318988 H3BS24 57 aa7.25□□□□□ -1.25
CTDNEP1-201ENST00000318988 LCE3DQ9BYE3 92 aa7.06□□□□□ -1.28
CTDNEP1-201ENST00000318988 KRTAP5-7Q6L8G8 165 aa6.96□□□□□ -1.29
CTDNEP1-201ENST00000318988 KRTAP4-11Q9BYQ6 195 aa6.94□□□□□ -1.3
CTDNEP1-201ENST00000318988 OBSCNQ5VST9 7968 aa6.92□□□□□ -1.3
CTDNEP1-201ENST00000318988 INE1O15225 51 aa6.86□□□□□ -1.31
CTDNEP1-201ENST00000318988 LCE3EQ5T5B0 92 aa6.81□□□□□ -1.32
CTDNEP1-201ENST00000318988 LCE1EQ5T753 118 aa6.69□□□□□ -1.34
CTDNEP1-201ENST00000318988 KRTAP5-8O75690 187 aa6.66□□□□□ -1.34
CTDNEP1-201ENST00000318988 KRTAP5-1Q6L8H4 278 aa6.56□□□□□ -1.36
CTDNEP1-201ENST00000318988 LCE1BQ5T7P3 118 aa6.3□□□□□ -1.4
CTDNEP1-201ENST00000318988 MUC5ACP98088 5654 aa6.3□□□□□ -1.4
CTDNEP1-201ENST00000318988 AHNAKQ09666 5890 aaKnown RBP6.28□□□□□ -1.4
CTDNEP1-201ENST00000318988 MUC5BQ9HC84 5762 aaPredicted RBP6.24□□□□□ -1.41
CTDNEP1-201ENST00000318988 LCE1CQ5T751 118 aa6.21□□□□□ -1.42
CTDNEP1-201ENST00000318988 KRTAP4-2Q9BYR5 136 aa6.2□□□□□ -1.42
CTDNEP1-201ENST00000318988 KRTAP9-9Q9BYP9 154 aa6.19□□□□□ -1.42
CTDNEP1-201ENST00000318988 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.75□□□□□ -1.49
CTDNEP1-201ENST00000318988 PRM1P04553 51 aa5.73□□□□□ -1.49
CTDNEP1-201ENST00000318988 KRTAP5-11Q6L8G4 156 aa5.52□□□□□ -1.53
CTDNEP1-201ENST00000318988 KRTAP21-2Q3LI59 83 aa5.38□□□□□ -1.55
CTDNEP1-201ENST00000318988 KRTAP4-12Q9BQ66 201 aa5.3□□□□□ -1.56
CTDNEP1-201ENST00000318988 LCE1FQ5T754 118 aa5.13□□□□□ -1.59
CTDNEP1-201ENST00000318988 KRTAP4-4Q9BYR3 166 aa4.83□□□□□ -1.64
CTDNEP1-201ENST00000318988 PHGR1C9JFL3 82 aa4.74□□□□□ -1.65
CTDNEP1-201ENST00000318988 MUC19Q7Z5P9 8384 aa4.19□□□□□ -1.74
CTDNEP1-201ENST00000318988 KRTAP21-1Q3LI58 79 aa3.4□□□□□ -1.86
CTDNEP1-201ENST00000318988 MUC16Q8WXI7 14507 aa3.07□□□□□ -1.92
Retrieved 77 of 20,778 RNA–protein pairs in 71.2 ms