RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 MT3P25713 68 aa5.25□□□□□ -1.57
SYNPO-201ENST00000307662 FAT4Q6V0I7 4981 aa5.21□□□□□ -1.58
SYNPO-201ENST00000307662 RNF213Q63HN8 5207 aa5.18□□□□□ -1.58
SYNPO-201ENST00000307662 KRTAP4-3Q9BYR4 195 aa5.16□□□□□ -1.58
SYNPO-201ENST00000307662 KRTAP2-3P0C7H8 128 aa5.16□□□□□ -1.58
SYNPO-201ENST00000307662 LCE2AQ5TA79 106 aaPredicted RBP5.16□□□□□ -1.58
SYNPO-201ENST00000307662 KRTAP2-4Q9BYR9 128 aa5.16□□□□□ -1.58
SYNPO-201ENST00000307662 KRTAP2-1Q9BYU5 128 aa5.16□□□□□ -1.58
SYNPO-201ENST00000307662 KRTAP19-7Q3SYF9 63 aa5.15□□□□□ -1.58
SYNPO-201ENST00000307662 HMCN2Q8NDA2 5059 aa5.12□□□□□ -1.59
SYNPO-201ENST00000307662 LCE2DQ5TA82 110 aaPredicted RBP5.12□□□□□ -1.59
SYNPO-201ENST00000307662 UBR4Q5T4S7 5183 aa5.11□□□□□ -1.59
SYNPO-201ENST00000307662 SYNE1Q8NF91 8797 aaKnown RBP5.01□□□□□ -1.61
SYNPO-201ENST00000307662 KRTAP9-2Q9BYQ4 174 aa5□□□□□ -1.61
SYNPO-201ENST00000307662 MT1AP04731 61 aa5□□□□□ -1.61
SYNPO-201ENST00000307662 KRTAP4-9Q9BYQ8 210 aa4.97□□□□□ -1.61
SYNPO-201ENST00000307662 MT4P47944 62 aa4.95□□□□□ -1.62
SYNPO-201ENST00000307662 LCE1BQ5T7P3 118 aa4.93□□□□□ -1.62
SYNPO-201ENST00000307662 LCE1DQ5T752 114 aa4.91□□□□□ -1.62
SYNPO-201ENST00000307662 FSIP2Q5CZC0 6907 aa4.88□□□□□ -1.63
SYNPO-201ENST00000307662 KRTAP9-6A8MVA2 160 aa4.82□□□□□ -1.64
SYNPO-201ENST00000307662 MUC2Q02817 5179 aa4.8□□□□□ -1.64
SYNPO-201ENST00000307662 KRTAP6-2Q3LI66 62 aa4.73□□□□□ -1.65
SYNPO-201ENST00000307662 LCE1AQ5T7P2 110 aa4.7□□□□□ -1.66
SYNPO-201ENST00000307662 KRTAP6-1Q3LI64 71 aa4.68□□□□□ -1.66
SYNPO-201ENST00000307662 LCE5AQ5TCM9 118 aa4.66□□□□□ -1.66
SYNPO-201ENST00000307662 KRTAP9-6A0A140TA67 174 aa4.65□□□□□ -1.67
SYNPO-201ENST00000307662 KRTAP9-4Q9BYQ2 154 aa4.59□□□□□ -1.68
SYNPO-201ENST00000307662 KRTAP9-7A8MTY7 169 aa4.58□□□□□ -1.68
SYNPO-201ENST00000307662 OBSCNQ5VST9 7968 aa4.57□□□□□ -1.68
SYNPO-201ENST00000307662 KRTAP6-3Q3LI67 103 aa4.57□□□□□ -1.68
SYNPO-201ENST00000307662 SYNE2Q8WXH0 6885 aaKnown RBP4.54□□□□□ -1.68
SYNPO-201ENST00000307662 KRTAP20-1Q3LI63 56 aa4.43□□□□□ -1.7
SYNPO-201ENST00000307662 LCE4AQ5TA78 99 aa4.39□□□□□ -1.71
SYNPO-201ENST00000307662 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.37□□□□□ -1.71
SYNPO-201ENST00000307662 USH2AO75445 5202 aa4.36□□□□□ -1.71
SYNPO-201ENST00000307662 FCGBPQ9Y6R7 5405 aaPredicted RBP4.3□□□□□ -1.72
SYNPO-201ENST00000307662 KRTAP2-2Q9BYT5 123 aa4.27□□□□□ -1.73
SYNPO-201ENST00000307662 KMT2DO14686 5537 aa4.13□□□□□ -1.75
SYNPO-201ENST00000307662 LCE1CQ5T751 118 aa4.11□□□□□ -1.75
SYNPO-201ENST00000307662 LCE1EQ5T753 118 aa4.11□□□□□ -1.75
SYNPO-201ENST00000307662 LCE1FQ5T754 118 aa4.11□□□□□ -1.75
SYNPO-201ENST00000307662 DSTQ03001 7570 aaKnown RBP4.08□□□□□ -1.76
SYNPO-201ENST00000307662 KRTAP5-9P26371 169 aa4.04□□□□□ -1.76
SYNPO-201ENST00000307662 GPR98Q8WXG9 6306 aa4.01□□□□□ -1.77
SYNPO-201ENST00000307662 SSPOA2VEC9 5147 aa4.01□□□□□ -1.77
SYNPO-201ENST00000307662 MACF1Q9UPN3 7388 aaKnown RBP4□□□□□ -1.77
SYNPO-201ENST00000307662 KRTAP4-11Q9BYQ6 195 aa3.94□□□□□ -1.78
SYNPO-201ENST00000307662 MUC12Q9UKN1 5478 aa3.88□□□□□ -1.79
SYNPO-201ENST00000307662 NEBP20929 6669 aa3.81□□□□□ -1.8
SYNPO-201ENST00000307662 KRTAP4-6Q9BYQ5 205 aa3.79□□□□□ -1.8
SYNPO-201ENST00000307662 KRTAP20-2Q3LI61 65 aa3.76□□□□□ -1.81
SYNPO-201ENST00000307662 KRTAP9-9Q9BYP9 154 aa3.69□□□□□ -1.82
SYNPO-201ENST00000307662 KRTAP5-5Q701N2 237 aaPredicted RBP3.68□□□□□ -1.82
SYNPO-201ENST00000307662 MDN1Q9NU22 5596 aa3.66□□□□□ -1.82
SYNPO-201ENST00000307662 MUC19Q7Z5P9 8384 aa3.58□□□□□ -1.84
SYNPO-201ENST00000307662 KRTAP5-4Q6L8H1 288 aa3.5□□□□□ -1.85
SYNPO-201ENST00000307662 KRTAP4-4Q9BYR3 166 aa3.46□□□□□ -1.86
SYNPO-201ENST00000307662 KRTAP4-12Q9BQ66 201 aa3.29□□□□□ -1.88
SYNPO-201ENST00000307662 KRTAP4-2Q9BYR5 136 aa3.29□□□□□ -1.88
SYNPO-201ENST00000307662 MUC5ACP98088 5654 aa3.11□□□□□ -1.91
SYNPO-201ENST00000307662 KRTAP5-3Q6L8H2 238 aa3.05□□□□□ -1.92
SYNPO-201ENST00000307662 HMCN1Q96RW7 5635 aa2.97□□□□□ -1.93
SYNPO-201ENST00000307662 AHNAK2Q8IVF2 5795 aa2.93□□□□□ -1.94
SYNPO-201ENST00000307662 KRTAP5-10Q6L8G5 202 aa2.87□□□□□ -1.95
SYNPO-201ENST00000307662 KRTAP5-2Q701N4 177 aa2.87□□□□□ -1.95
SYNPO-201ENST00000307662 KRTAP5-8O75690 187 aa2.76□□□□□ -1.97
SYNPO-201ENST00000307662 MUC5BQ9HC84 5762 aaPredicted RBP2.58□□□□□ -2
SYNPO-201ENST00000307662 KRTAP5-11Q6L8G4 156 aa2.53□□□□□ -2
SYNPO-201ENST00000307662 KRTAP5-1Q6L8H4 278 aa2.49□□□□□ -2.01
SYNPO-201ENST00000307662 KRTAP21-2Q3LI59 83 aa2.45□□□□□ -2.02
SYNPO-201ENST00000307662 PHGR1C9JFL3 82 aa2.42□□□□□ -2.02
SYNPO-201ENST00000307662 AHNAKQ09666 5890 aaKnown RBP2.41□□□□□ -2.02
SYNPO-201ENST00000307662 KRTAP21-1Q3LI58 79 aa2.38□□□□□ -2.03
SYNPO-201ENST00000307662 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.32□□□□□ -2.04
SYNPO-201ENST00000307662 KRTAP5-7Q6L8G8 165 aa2.02□□□□□ -2.09
SYNPO-201ENST00000307662 MUC16Q8WXI7 14507 aa1.47□□□□□ -2.17
Retrieved 77 of 20,778 RNA–protein pairs in 6 ms