RNA–Protein interactions for RNA: ENST00000297265.4

CHMP4C-201, Transcript of charged multivesicular body protein 4C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4C, Length 1,866 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4C-201ENST00000297265 KRTAP19-6Q3LI70 58 aa5.21□□□□□ -1.58
CHMP4C-201ENST00000297265 NEBP20929 6669 aa5.19□□□□□ -1.58
CHMP4C-201ENST00000297265 KRTAP4-9Q9BYQ8 210 aa5.19□□□□□ -1.58
CHMP4C-201ENST00000297265 MACF1Q9UPN3 7388 aaKnown RBP5.16□□□□□ -1.58
CHMP4C-201ENST00000297265 FCGBPQ9Y6R7 5405 aaPredicted RBP5.15□□□□□ -1.59
CHMP4C-201ENST00000297265 KRTAP12-3P60328 96 aa5.15□□□□□ -1.59
CHMP4C-201ENST00000297265 KRTAP20-1Q3LI63 56 aa5.12□□□□□ -1.59
CHMP4C-201ENST00000297265 KRTAP19-5Q3LI72 72 aa5.09□□□□□ -1.59
CHMP4C-201ENST00000297265 SPRR5A0A1B0GTR4 108 aa5.07□□□□□ -1.6
CHMP4C-201ENST00000297265 KRTAP6-3Q3LI67 103 aa5.07□□□□□ -1.6
CHMP4C-201ENST00000297265 KRTAP19-7Q3SYF9 63 aa5.02□□□□□ -1.61
CHMP4C-201ENST00000297265 NDUFAF8A1L188 74 aa4.96□□□□□ -1.61
CHMP4C-201ENST00000297265 GPR98Q8WXG9 6306 aa4.95□□□□□ -1.62
CHMP4C-201ENST00000297265 MT1EP04732 61 aa4.88□□□□□ -1.63
CHMP4C-201ENST00000297265 LCE3CQ5T5A8 94 aa4.84□□□□□ -1.63
CHMP4C-201ENST00000297265 KRTAP4-11Q9BYQ6 195 aa4.84□□□□□ -1.63
CHMP4C-201ENST00000297265 LUZP6Q538Z0 58 aa4.83□□□□□ -1.64
CHMP4C-201ENST00000297265 LCE4AQ5TA78 99 aa4.81□□□□□ -1.64
CHMP4C-201ENST00000297265 MT1LQ93083 61 aa4.81□□□□□ -1.64
CHMP4C-201ENST00000297265 MUC12Q9UKN1 5478 aa4.76□□□□□ -1.65
CHMP4C-201ENST00000297265 KRTAP2-3P0C7H8 128 aa4.75□□□□□ -1.65
CHMP4C-201ENST00000297265 KRTAP2-4Q9BYR9 128 aa4.75□□□□□ -1.65
CHMP4C-201ENST00000297265 KRTAP9-6A8MVA2 160 aa4.69□□□□□ -1.66
CHMP4C-201ENST00000297265 A0A0A0MQY5 61 aa4.68□□□□□ -1.66
CHMP4C-201ENST00000297265 KRTAP19-3Q7Z4W3 81 aa4.64□□□□□ -1.67
CHMP4C-201ENST00000297265 SPRR2FQ96RM1 72 aa4.62□□□□□ -1.67
CHMP4C-201ENST00000297265 MT1GP13640 62 aa4.6□□□□□ -1.67
CHMP4C-201ENST00000297265 MT1MQ8N339 61 aa4.58□□□□□ -1.68
CHMP4C-201ENST00000297265 KRTAP4-3Q9BYR4 195 aa4.58□□□□□ -1.68
CHMP4C-201ENST00000297265 LCE5AQ5TCM9 118 aa4.57□□□□□ -1.68
CHMP4C-201ENST00000297265 KRTAP5-9P26371 169 aa4.56□□□□□ -1.68
CHMP4C-201ENST00000297265 KRTAP2-2Q9BYT5 123 aa4.53□□□□□ -1.68
CHMP4C-201ENST00000297265 KRTAP2-1Q9BYU5 128 aa4.53□□□□□ -1.68
CHMP4C-201ENST00000297265 MDN1Q9NU22 5596 aa4.51□□□□□ -1.69
CHMP4C-201ENST00000297265 DSTQ03001 7570 aaKnown RBP4.44□□□□□ -1.7
CHMP4C-201ENST00000297265 LCE1AQ5T7P2 110 aa4.44□□□□□ -1.7
CHMP4C-201ENST00000297265 SPRR2EP22531 72 aa4.32□□□□□ -1.72
CHMP4C-201ENST00000297265 SPRR2BP35325 72 aa4.32□□□□□ -1.72
CHMP4C-201ENST00000297265 SPRR2AP35326 72 aa4.32□□□□□ -1.72
CHMP4C-201ENST00000297265 AHNAK2Q8IVF2 5795 aa4.17□□□□□ -1.74
CHMP4C-201ENST00000297265 KRTAP5-5Q701N2 237 aaPredicted RBP4.15□□□□□ -1.75
CHMP4C-201ENST00000297265 SPRR2DP22532 72 aa4.14□□□□□ -1.75
CHMP4C-201ENST00000297265 KRTAP6-1Q3LI64 71 aa4.08□□□□□ -1.76
CHMP4C-201ENST00000297265 KRTAP5-7Q6L8G8 165 aa4.07□□□□□ -1.76
CHMP4C-201ENST00000297265 KRTAP5-10Q6L8G5 202 aa4.06□□□□□ -1.76
CHMP4C-201ENST00000297265 MT1AP04731 61 aa4.05□□□□□ -1.76
CHMP4C-201ENST00000297265 INE1O15225 51 aa4.01□□□□□ -1.77
CHMP4C-201ENST00000297265 SYNE1Q8NF91 8797 aaKnown RBP3.99□□□□□ -1.77
CHMP4C-201ENST00000297265 HMCN1Q96RW7 5635 aa3.98□□□□□ -1.77
CHMP4C-201ENST00000297265 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.88□□□□□ -1.79
CHMP4C-201ENST00000297265 KRTAP5-4Q6L8H1 288 aa3.86□□□□□ -1.79
CHMP4C-201ENST00000297265 AHNAKQ09666 5890 aaKnown RBP3.81□□□□□ -1.8
CHMP4C-201ENST00000297265 MUC5BQ9HC84 5762 aaPredicted RBP3.74□□□□□ -1.81
CHMP4C-201ENST00000297265 MT3P25713 68 aa3.71□□□□□ -1.82
CHMP4C-201ENST00000297265 KRTAP12-4P60329 112 aa3.71□□□□□ -1.82
CHMP4C-201ENST00000297265 KRTAP6-2Q3LI66 62 aa3.71□□□□□ -1.82
CHMP4C-201ENST00000297265 LCE3DQ9BYE3 92 aa3.64□□□□□ -1.83
CHMP4C-201ENST00000297265 MT4P47944 62 aa3.63□□□□□ -1.83
CHMP4C-201ENST00000297265 KRTAP20-2Q3LI61 65 aa3.58□□□□□ -1.84
CHMP4C-201ENST00000297265 LCE3EQ5T5B0 92 aa3.56□□□□□ -1.84
CHMP4C-201ENST00000297265 MUC5ACP98088 5654 aa3.55□□□□□ -1.84
CHMP4C-201ENST00000297265 OBSCNQ5VST9 7968 aa3.54□□□□□ -1.84
CHMP4C-201ENST00000297265 KRTAP5-2Q701N4 177 aa3.53□□□□□ -1.84
CHMP4C-201ENST00000297265 LCE1FQ5T754 118 aa3.3□□□□□ -1.88
CHMP4C-201ENST00000297265 KRTAP5-11Q6L8G4 156 aa3.23□□□□□ -1.89
CHMP4C-201ENST00000297265 PRM1P04553 51 aa3.21□□□□□ -1.9
CHMP4C-201ENST00000297265 KRTAP5-1Q6L8H4 278 aa3.2□□□□□ -1.9
CHMP4C-201ENST00000297265 KRTAP4-4Q9BYR3 166 aa3.18□□□□□ -1.9
CHMP4C-201ENST00000297265 KRTAP5-8O75690 187 aa3.15□□□□□ -1.91
CHMP4C-201ENST00000297265 LCE1EQ5T753 118 aa3.13□□□□□ -1.91
CHMP4C-201ENST00000297265 LCE1BQ5T7P3 118 aa2.95□□□□□ -1.94
CHMP4C-201ENST00000297265 LCE1CQ5T751 118 aa2.94□□□□□ -1.94
CHMP4C-201ENST00000297265 KRTAP21-2Q3LI59 83 aa2.69□□□□□ -1.98
CHMP4C-201ENST00000297265 PHGR1C9JFL3 82 aa2.38□□□□□ -2.03
CHMP4C-201ENST00000297265 MUC19Q7Z5P9 8384 aa2.1□□□□□ -2.07
CHMP4C-201ENST00000297265 KRTAP21-1Q3LI58 79 aa2.01□□□□□ -2.09
CHMP4C-201ENST00000297265 MUC16Q8WXI7 14507 aa1.46□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 62.5 ms