RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 MUC12Q9UKN1 5478 aa3.5□□□□□ -1.85
COPB1-201ENST00000249923 LCE2DQ5TA82 110 aaPredicted RBP3.47□□□□□ -1.85
COPB1-201ENST00000249923 KRTAP2-3P0C7H8 128 aa3.45□□□□□ -1.86
COPB1-201ENST00000249923 KRTAP2-4Q9BYR9 128 aa3.45□□□□□ -1.86
COPB1-201ENST00000249923 KRTAP2-1Q9BYU5 128 aa3.45□□□□□ -1.86
COPB1-201ENST00000249923 KRTAP19-6Q3LI70 58 aa3.44□□□□□ -1.86
COPB1-201ENST00000249923 KRTAP4-3Q9BYR4 195 aa3.4□□□□□ -1.86
COPB1-201ENST00000249923 LOC100996750A0A140TA64 210 aa3.38□□□□□ -1.87
COPB1-201ENST00000249923 MT1GP13640 62 aa3.34□□□□□ -1.87
COPB1-201ENST00000249923 KRTAP12-4P60329 112 aa3.31□□□□□ -1.88
COPB1-201ENST00000249923 KRTAP19-4Q3LI73 84 aa3.3□□□□□ -1.88
COPB1-201ENST00000249923 SYNE2Q8WXH0 6885 aaKnown RBP3.28□□□□□ -1.88
COPB1-201ENST00000249923 MT1MQ8N339 61 aa3.28□□□□□ -1.88
COPB1-201ENST00000249923 MACF1Q9UPN3 7388 aaKnown RBP3.27□□□□□ -1.89
COPB1-201ENST00000249923 KRTAP19-3Q7Z4W3 81 aa3.25□□□□□ -1.89
COPB1-201ENST00000249923 LCE3BQ5TA77 95 aa3.25□□□□□ -1.89
COPB1-201ENST00000249923 MDN1Q9NU22 5596 aa3.21□□□□□ -1.89
COPB1-201ENST00000249923 KRTAP4-9Q9BYQ8 210 aa3.21□□□□□ -1.9
COPB1-201ENST00000249923 LCE5AQ5TCM9 118 aa3.18□□□□□ -1.9
COPB1-201ENST00000249923 SPRR2FQ96RM1 72 aa3.13□□□□□ -1.91
COPB1-201ENST00000249923 KRTAP6-1Q3LI64 71 aa3.01□□□□□ -1.93
COPB1-201ENST00000249923 LCE1AQ5T7P2 110 aa2.96□□□□□ -1.93
COPB1-201ENST00000249923 PRM1P04553 51 aa2.95□□□□□ -1.94
COPB1-201ENST00000249923 KRTAP5-5Q701N2 237 aaPredicted RBP2.95□□□□□ -1.94
COPB1-201ENST00000249923 LCE3DQ9BYE3 92 aa2.95□□□□□ -1.94
COPB1-201ENST00000249923 KRTAP9-7A8MTY7 169 aa2.94□□□□□ -1.94
COPB1-201ENST00000249923 KRTAP5-9P26371 169 aa2.94□□□□□ -1.94
COPB1-201ENST00000249923 KRTAP9-2Q9BYQ4 174 aa2.92□□□□□ -1.94
COPB1-201ENST00000249923 KRTAP9-6A0A140TA67 174 aa2.9□□□□□ -1.94
COPB1-201ENST00000249923 MT1AP04731 61 aa2.9□□□□□ -1.94
COPB1-201ENST00000249923 LCE3EQ5T5B0 92 aa2.88□□□□□ -1.95
COPB1-201ENST00000249923 SPRR2EP22531 72 aa2.82□□□□□ -1.96
COPB1-201ENST00000249923 SPRR2BP35325 72 aa2.82□□□□□ -1.96
COPB1-201ENST00000249923 SPRR2AP35326 72 aa2.82□□□□□ -1.96
COPB1-201ENST00000249923 KRTAP9-4Q9BYQ2 154 aa2.74□□□□□ -1.97
COPB1-201ENST00000249923 KRTAP6-2Q3LI66 62 aa2.71□□□□□ -1.98
COPB1-201ENST00000249923 SPRR2DP22532 72 aa2.69□□□□□ -1.98
COPB1-201ENST00000249923 MUC19Q7Z5P9 8384 aa2.64□□□□□ -1.99
COPB1-201ENST00000249923 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.64□□□□□ -1.99
COPB1-201ENST00000249923 KRTAP6-3Q3LI67 103 aa2.62□□□□□ -1.99
COPB1-201ENST00000249923 MT3P25713 68 aa2.56□□□□□ -2
COPB1-201ENST00000249923 KRTAP5-4Q6L8H1 288 aa2.56□□□□□ -2
COPB1-201ENST00000249923 NEBP20929 6669 aa2.55□□□□□ -2
COPB1-201ENST00000249923 KRTAP4-6Q9BYQ5 205 aa2.51□□□□□ -2.01
COPB1-201ENST00000249923 MT4P47944 62 aa2.49□□□□□ -2.01
COPB1-201ENST00000249923 KRTAP2-2Q9BYT5 123 aa2.46□□□□□ -2.02
COPB1-201ENST00000249923 HMCN1Q96RW7 5635 aa2.46□□□□□ -2.02
COPB1-201ENST00000249923 LCE1DQ5T752 114 aa2.41□□□□□ -2.02
COPB1-201ENST00000249923 KRTAP5-2Q701N4 177 aa2.4□□□□□ -2.02
COPB1-201ENST00000249923 KRTAP20-2Q3LI61 65 aa2.4□□□□□ -2.03
COPB1-201ENST00000249923 LCE1EQ5T753 118 aa2.38□□□□□ -2.03
COPB1-201ENST00000249923 LCE1BQ5T7P3 118 aa2.38□□□□□ -2.03
COPB1-201ENST00000249923 MUC5ACP98088 5654 aa2.33□□□□□ -2.04
COPB1-201ENST00000249923 KRTAP5-3Q6L8H2 238 aa2.31□□□□□ -2.04
COPB1-201ENST00000249923 KRTAP4-11Q9BYQ6 195 aa2.3□□□□□ -2.04
COPB1-201ENST00000249923 LCE4AQ5TA78 99 aa2.29□□□□□ -2.04
COPB1-201ENST00000249923 KRTAP20-1Q3LI63 56 aa2.2□□□□□ -2.06
COPB1-201ENST00000249923 KRTAP5-10Q6L8G5 202 aa2.12□□□□□ -2.07
COPB1-201ENST00000249923 KRTAP5-1Q6L8H4 278 aa2.1□□□□□ -2.07
COPB1-201ENST00000249923 KRTAP4-2Q9BYR5 136 aa2.09□□□□□ -2.08
COPB1-201ENST00000249923 KRTAP4-4Q9BYR3 166 aa2.04□□□□□ -2.08
COPB1-201ENST00000249923 LCE1CQ5T751 118 aa2.03□□□□□ -2.09
COPB1-201ENST00000249923 KRTAP4-12Q9BQ66 201 aa1.98□□□□□ -2.09
COPB1-201ENST00000249923 KRTAP21-2Q3LI59 83 aa1.96□□□□□ -2.1
COPB1-201ENST00000249923 GPR98Q8WXG9 6306 aa1.95□□□□□ -2.1
COPB1-201ENST00000249923 KRTAP9-9Q9BYP9 154 aa1.93□□□□□ -2.1
COPB1-201ENST00000249923 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.92□□□□□ -2.1
COPB1-201ENST00000249923 KRTAP5-8O75690 187 aa1.92□□□□□ -2.1
COPB1-201ENST00000249923 AHNAK2Q8IVF2 5795 aa1.91□□□□□ -2.1
COPB1-201ENST00000249923 KRTAP5-7Q6L8G8 165 aa1.86□□□□□ -2.11
COPB1-201ENST00000249923 MUC5BQ9HC84 5762 aaPredicted RBP1.85□□□□□ -2.11
COPB1-201ENST00000249923 LCE1FQ5T754 118 aa1.74□□□□□ -2.13
COPB1-201ENST00000249923 KRTAP5-11Q6L8G4 156 aa1.74□□□□□ -2.13
COPB1-201ENST00000249923 KRTAP21-1Q3LI58 79 aa1.69□□□□□ -2.14
COPB1-201ENST00000249923 AHNAKQ09666 5890 aaKnown RBP1.67□□□□□ -2.14
COPB1-201ENST00000249923 PHGR1C9JFL3 82 aa1.52□□□□□ -2.17
COPB1-201ENST00000249923 MUC16Q8WXI7 14507 aa1□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 11.5 ms