RNA–Protein interactions for RNA: ENST00000249499.7

HOXD9-201, Transcript of homeobox D9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD9, Length 1,870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9-201ENST00000249499 KRTAP6-3Q3LI67 103 aa8.17□□□□□ -1.1
HOXD9-201ENST00000249499 MT1EP04732 61 aa8.17□□□□□ -1.1
HOXD9-201ENST00000249499 MUC12Q9UKN1 5478 aa8.1□□□□□ -1.11
HOXD9-201ENST00000249499 MT1LQ93083 61 aa8.08□□□□□ -1.12
HOXD9-201ENST00000249499 A0A0A0MQY5 61 aa8.06□□□□□ -1.12
HOXD9-201ENST00000249499 KRTAP5-9P26371 169 aa7.98□□□□□ -1.13
HOXD9-201ENST00000249499 MDN1Q9NU22 5596 aa7.91□□□□□ -1.14
HOXD9-201ENST00000249499 NEBP20929 6669 aa7.84□□□□□ -1.15
HOXD9-201ENST00000249499 SPRR2FQ96RM1 72 aa7.84□□□□□ -1.15
HOXD9-201ENST00000249499 KRTAP4-7Q9BYR0 210 aa7.82□□□□□ -1.16
HOXD9-201ENST00000249499 KRTAP9-6A8MVA2 160 aa7.79□□□□□ -1.16
HOXD9-201ENST00000249499 KRTAP19-3Q7Z4W3 81 aa7.77□□□□□ -1.17
HOXD9-201ENST00000249499 MT1GP13640 62 aa7.75□□□□□ -1.17
HOXD9-201ENST00000249499 MT1MQ8N339 61 aa7.66□□□□□ -1.18
HOXD9-201ENST00000249499 SPRR2EP22531 72 aa7.62□□□□□ -1.19
HOXD9-201ENST00000249499 SPRR2BP35325 72 aa7.62□□□□□ -1.19
HOXD9-201ENST00000249499 SPRR2AP35326 72 aa7.62□□□□□ -1.19
HOXD9-201ENST00000249499 LCE1AQ5T7P2 110 aa7.6□□□□□ -1.19
HOXD9-201ENST00000249499 LCE5AQ5TCM9 118 aa7.58□□□□□ -1.2
HOXD9-201ENST00000249499 KRTAP2-3P0C7H8 128 aa7.47□□□□□ -1.21
HOXD9-201ENST00000249499 KRTAP4-3Q9BYR4 195 aa7.47□□□□□ -1.21
HOXD9-201ENST00000249499 KRTAP2-4Q9BYR9 128 aa7.47□□□□□ -1.21
HOXD9-201ENST00000249499 KRTAP2-1Q9BYU5 128 aa7.47□□□□□ -1.21
HOXD9-201ENST00000249499 INE1O15225 51 aa7.44□□□□□ -1.22
HOXD9-201ENST00000249499 KRTAP20-1Q3LI63 56 aa7.39□□□□□ -1.23
HOXD9-201ENST00000249499 SPRR2DP22532 72 aa7.35□□□□□ -1.23
HOXD9-201ENST00000249499 LOC100996750A0A140TA64 210 aa7.32□□□□□ -1.24
HOXD9-201ENST00000249499 DSTQ03001 7570 aaKnown RBP7.2□□□□□ -1.26
HOXD9-201ENST00000249499 LCE3BQ5TA77 95 aa7.13□□□□□ -1.27
HOXD9-201ENST00000249499 KRTAP2-2Q9BYT5 123 aa7.09□□□□□ -1.28
HOXD9-201ENST00000249499 KRTAP5-5Q701N2 237 aaPredicted RBP6.88□□□□□ -1.31
HOXD9-201ENST00000249499 MT1AP04731 61 aa6.87□□□□□ -1.31
HOXD9-201ENST00000249499 KRTAP6-1Q3LI64 71 aa6.78□□□□□ -1.32
HOXD9-201ENST00000249499 KRTAP4-9Q9BYQ8 210 aa6.6□□□□□ -1.35
HOXD9-201ENST00000249499 KRTAP5-4Q6L8H1 288 aa6.49□□□□□ -1.37
HOXD9-201ENST00000249499 KRTAP9-4Q9BYQ2 154 aa6.49□□□□□ -1.37
HOXD9-201ENST00000249499 LCE4AQ5TA78 99 aa6.48□□□□□ -1.37
HOXD9-201ENST00000249499 LCE1DQ5T752 114 aa6.47□□□□□ -1.37
HOXD9-201ENST00000249499 MT4P47944 62 aa6.45□□□□□ -1.38
HOXD9-201ENST00000249499 HMCN1Q96RW7 5635 aa6.42□□□□□ -1.38
HOXD9-201ENST00000249499 KRTAP12-4P60329 112 aa6.41□□□□□ -1.38
HOXD9-201ENST00000249499 SYNE1Q8NF91 8797 aaKnown RBP6.41□□□□□ -1.38
HOXD9-201ENST00000249499 KRTAP4-6Q9BYQ5 205 aa6.34□□□□□ -1.39
HOXD9-201ENST00000249499 LCE3DQ9BYE3 92 aa6.28□□□□□ -1.4
HOXD9-201ENST00000249499 MT3P25713 68 aa6.21□□□□□ -1.42
HOXD9-201ENST00000249499 LCE3EQ5T5B0 92 aa6.17□□□□□ -1.42
HOXD9-201ENST00000249499 KRTAP6-2Q3LI66 62 aa6.16□□□□□ -1.42
HOXD9-201ENST00000249499 KRTAP20-2Q3LI61 65 aa6.11□□□□□ -1.43
HOXD9-201ENST00000249499 AHNAK2Q8IVF2 5795 aa6.02□□□□□ -1.45
HOXD9-201ENST00000249499 GPR98Q8WXG9 6306 aa6□□□□□ -1.45
HOXD9-201ENST00000249499 KRTAP5-3Q6L8H2 238 aa5.94□□□□□ -1.46
HOXD9-201ENST00000249499 KRTAP5-2Q701N4 177 aa5.85□□□□□ -1.47
HOXD9-201ENST00000249499 KRTAP5-10Q6L8G5 202 aa5.81□□□□□ -1.48
HOXD9-201ENST00000249499 PRM1P04553 51 aa5.6□□□□□ -1.51
HOXD9-201ENST00000249499 OBSCNQ5VST9 7968 aa5.59□□□□□ -1.51
HOXD9-201ENST00000249499 KRTAP5-7Q6L8G8 165 aa5.49□□□□□ -1.53
HOXD9-201ENST00000249499 KRTAP4-11Q9BYQ6 195 aa5.48□□□□□ -1.53
HOXD9-201ENST00000249499 KRTAP5-8O75690 187 aa5.32□□□□□ -1.56
HOXD9-201ENST00000249499 LCE1EQ5T753 118 aa5.31□□□□□ -1.56
HOXD9-201ENST00000249499 KRTAP5-1Q6L8H4 278 aa5.12□□□□□ -1.59
HOXD9-201ENST00000249499 MUC5ACP98088 5654 aa5.02□□□□□ -1.61
HOXD9-201ENST00000249499 LCE1CQ5T751 118 aa4.94□□□□□ -1.62
HOXD9-201ENST00000249499 LCE1BQ5T7P3 118 aa4.94□□□□□ -1.62
HOXD9-201ENST00000249499 MUC5BQ9HC84 5762 aaPredicted RBP4.91□□□□□ -1.62
HOXD9-201ENST00000249499 KRTAP9-9Q9BYP9 154 aa4.9□□□□□ -1.63
HOXD9-201ENST00000249499 KRTAP4-2Q9BYR5 136 aa4.9□□□□□ -1.63
HOXD9-201ENST00000249499 AHNAKQ09666 5890 aaKnown RBP4.79□□□□□ -1.64
HOXD9-201ENST00000249499 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.69□□□□□ -1.66
HOXD9-201ENST00000249499 KRTAP21-2Q3LI59 83 aa4.45□□□□□ -1.7
HOXD9-201ENST00000249499 KRTAP5-11Q6L8G4 156 aa4.32□□□□□ -1.72
HOXD9-201ENST00000249499 KRTAP4-12Q9BQ66 201 aa4.18□□□□□ -1.74
HOXD9-201ENST00000249499 LCE1FQ5T754 118 aa4.03□□□□□ -1.76
HOXD9-201ENST00000249499 KRTAP4-4Q9BYR3 166 aa3.86□□□□□ -1.79
HOXD9-201ENST00000249499 PHGR1C9JFL3 82 aa3.69□□□□□ -1.82
HOXD9-201ENST00000249499 KRTAP21-1Q3LI58 79 aa3.52□□□□□ -1.85
HOXD9-201ENST00000249499 MUC19Q7Z5P9 8384 aa3.4□□□□□ -1.87
HOXD9-201ENST00000249499 MUC16Q8WXI7 14507 aa2.47□□□□□ -2.01
Retrieved 77 of 20,778 RNA–protein pairs in 6.1 ms