RNA–Protein interactions for RNA: ENST00000217315.9

TM9SF4-201, Transcript of transmembrane 9 superfamily member 4, humanhuman

TSL 2 BASIC

Gene TM9SF4, Length 4,032 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-201ENST00000217315 KRTAP9-6A8MVA2 160 aa4.05□□□□□ -1.76
TM9SF4-201ENST00000217315 DSTQ03001 7570 aaKnown RBP4.03□□□□□ -1.76
TM9SF4-201ENST00000217315 SYNE1Q8NF91 8797 aaKnown RBP4.03□□□□□ -1.76
TM9SF4-201ENST00000217315 LOC100996750A0A140TA64 210 aa4.02□□□□□ -1.77
TM9SF4-201ENST00000217315 LCE3BQ5TA77 95 aa4□□□□□ -1.77
TM9SF4-201ENST00000217315 FCGBPQ9Y6R7 5405 aaPredicted RBP3.99□□□□□ -1.77
TM9SF4-201ENST00000217315 MT1MQ8N339 61 aa3.98□□□□□ -1.77
TM9SF4-201ENST00000217315 OBSCNQ5VST9 7968 aa3.95□□□□□ -1.78
TM9SF4-201ENST00000217315 KRTAP12-4P60329 112 aa3.94□□□□□ -1.78
TM9SF4-201ENST00000217315 SPRR2EP22531 72 aa3.91□□□□□ -1.78
TM9SF4-201ENST00000217315 SPRR2BP35325 72 aa3.91□□□□□ -1.78
TM9SF4-201ENST00000217315 SPRR2AP35326 72 aa3.91□□□□□ -1.78
TM9SF4-201ENST00000217315 SSPOA2VEC9 5147 aa3.89□□□□□ -1.79
TM9SF4-201ENST00000217315 KRTAP2-3P0C7H8 128 aa3.88□□□□□ -1.79
TM9SF4-201ENST00000217315 KRTAP2-4Q9BYR9 128 aa3.88□□□□□ -1.79
TM9SF4-201ENST00000217315 KRTAP2-1Q9BYU5 128 aa3.88□□□□□ -1.79
TM9SF4-201ENST00000217315 MUC12Q9UKN1 5478 aa3.87□□□□□ -1.79
TM9SF4-201ENST00000217315 LCE2DQ5TA82 110 aaPredicted RBP3.82□□□□□ -1.8
TM9SF4-201ENST00000217315 SYNE2Q8WXH0 6885 aaKnown RBP3.8□□□□□ -1.8
TM9SF4-201ENST00000217315 KRTAP9-2Q9BYQ4 174 aa3.77□□□□□ -1.81
TM9SF4-201ENST00000217315 SPRR2DP22532 72 aa3.74□□□□□ -1.81
TM9SF4-201ENST00000217315 LCE3DQ9BYE3 92 aa3.73□□□□□ -1.81
TM9SF4-201ENST00000217315 LCE5AQ5TCM9 118 aa3.7□□□□□ -1.82
TM9SF4-201ENST00000217315 KRTAP4-9Q9BYQ8 210 aa3.68□□□□□ -1.82
TM9SF4-201ENST00000217315 MACF1Q9UPN3 7388 aaKnown RBP3.68□□□□□ -1.82
TM9SF4-201ENST00000217315 LCE3EQ5T5B0 92 aa3.66□□□□□ -1.82
TM9SF4-201ENST00000217315 MT1AP04731 61 aa3.59□□□□□ -1.83
TM9SF4-201ENST00000217315 KRTAP6-1Q3LI64 71 aa3.58□□□□□ -1.84
TM9SF4-201ENST00000217315 LCE1AQ5T7P2 110 aa3.55□□□□□ -1.84
TM9SF4-201ENST00000217315 MT3P25713 68 aa3.46□□□□□ -1.86
TM9SF4-201ENST00000217315 PRM1P04553 51 aa3.44□□□□□ -1.86
TM9SF4-201ENST00000217315 MDN1Q9NU22 5596 aa3.4□□□□□ -1.87
TM9SF4-201ENST00000217315 MT4P47944 62 aa3.38□□□□□ -1.87
TM9SF4-201ENST00000217315 KRTAP6-2Q3LI66 62 aa3.34□□□□□ -1.87
TM9SF4-201ENST00000217315 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.34□□□□□ -1.88
TM9SF4-201ENST00000217315 KRTAP9-4Q9BYQ2 154 aa3.34□□□□□ -1.88
TM9SF4-201ENST00000217315 KRTAP9-6A0A140TA67 174 aa3.33□□□□□ -1.88
TM9SF4-201ENST00000217315 KRTAP6-3Q3LI67 103 aa3.33□□□□□ -1.88
TM9SF4-201ENST00000217315 KRTAP5-9P26371 169 aa3.32□□□□□ -1.88
TM9SF4-201ENST00000217315 KRTAP9-7A8MTY7 169 aa3.29□□□□□ -1.88
TM9SF4-201ENST00000217315 LCE1DQ5T752 114 aa3.15□□□□□ -1.91
TM9SF4-201ENST00000217315 LCE1BQ5T7P3 118 aa3.1□□□□□ -1.91
TM9SF4-201ENST00000217315 KRTAP5-5Q701N2 237 aaPredicted RBP3.09□□□□□ -1.92
TM9SF4-201ENST00000217315 KRTAP4-6Q9BYQ5 205 aa3.02□□□□□ -1.93
TM9SF4-201ENST00000217315 LCE4AQ5TA78 99 aa3.02□□□□□ -1.93
TM9SF4-201ENST00000217315 KRTAP2-2Q9BYT5 123 aa2.96□□□□□ -1.94
TM9SF4-201ENST00000217315 NEBP20929 6669 aa2.93□□□□□ -1.94
TM9SF4-201ENST00000217315 KRTAP20-1Q3LI63 56 aa2.93□□□□□ -1.94
TM9SF4-201ENST00000217315 KRTAP20-2Q3LI61 65 aa2.89□□□□□ -1.95
TM9SF4-201ENST00000217315 KRTAP5-4Q6L8H1 288 aa2.76□□□□□ -1.97
TM9SF4-201ENST00000217315 MUC19Q7Z5P9 8384 aa2.67□□□□□ -1.98
TM9SF4-201ENST00000217315 HMCN1Q96RW7 5635 aa2.65□□□□□ -1.99
TM9SF4-201ENST00000217315 MUC5ACP98088 5654 aa2.64□□□□□ -1.99
TM9SF4-201ENST00000217315 KRTAP4-11Q9BYQ6 195 aa2.61□□□□□ -1.99
TM9SF4-201ENST00000217315 KRTAP5-2Q701N4 177 aa2.52□□□□□ -2.01
TM9SF4-201ENST00000217315 LCE1EQ5T753 118 aa2.52□□□□□ -2.01
TM9SF4-201ENST00000217315 GPR98Q8WXG9 6306 aa2.49□□□□□ -2.01
TM9SF4-201ENST00000217315 KRTAP5-3Q6L8H2 238 aa2.47□□□□□ -2.01
TM9SF4-201ENST00000217315 KRTAP4-4Q9BYR3 166 aa2.4□□□□□ -2.03
TM9SF4-201ENST00000217315 LCE1CQ5T751 118 aa2.34□□□□□ -2.04
TM9SF4-201ENST00000217315 LCE1FQ5T754 118 aa2.34□□□□□ -2.04
TM9SF4-201ENST00000217315 KRTAP5-10Q6L8G5 202 aa2.34□□□□□ -2.04
TM9SF4-201ENST00000217315 KRTAP4-12Q9BQ66 201 aa2.32□□□□□ -2.04
TM9SF4-201ENST00000217315 KRTAP4-2Q9BYR5 136 aa2.32□□□□□ -2.04
TM9SF4-201ENST00000217315 KRTAP9-9Q9BYP9 154 aa2.32□□□□□ -2.04
TM9SF4-201ENST00000217315 AHNAK2Q8IVF2 5795 aa2.24□□□□□ -2.05
TM9SF4-201ENST00000217315 KRTAP5-1Q6L8H4 278 aa2.21□□□□□ -2.05
TM9SF4-201ENST00000217315 KRTAP5-8O75690 187 aa2.19□□□□□ -2.06
TM9SF4-201ENST00000217315 KRTAP21-2Q3LI59 83 aa2.11□□□□□ -2.07
TM9SF4-201ENST00000217315 MUC5BQ9HC84 5762 aaPredicted RBP2.08□□□□□ -2.08
TM9SF4-201ENST00000217315 KRTAP5-11Q6L8G4 156 aa2□□□□□ -2.09
TM9SF4-201ENST00000217315 KRTAP5-6Q6L8G9 129 aaPredicted RBP2□□□□□ -2.09
TM9SF4-201ENST00000217315 KRTAP5-7Q6L8G8 165 aa1.88□□□□□ -2.11
TM9SF4-201ENST00000217315 AHNAKQ09666 5890 aaKnown RBP1.85□□□□□ -2.11
TM9SF4-201ENST00000217315 KRTAP21-1Q3LI58 79 aa1.79□□□□□ -2.12
TM9SF4-201ENST00000217315 PHGR1C9JFL3 82 aa1.71□□□□□ -2.14
TM9SF4-201ENST00000217315 MUC16Q8WXI7 14507 aa1.08□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 12 ms