RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 PRM1P04553 51 aa4.07□□□□□ -1.76
SF3A1-201ENST00000215793 MT4P47944 62 aa4.07□□□□□ -1.76
SF3A1-201ENST00000215793 LOC100996750A0A140TA64 210 aa4.05□□□□□ -1.76
SF3A1-201ENST00000215793 KRTAP4-3Q9BYR4 195 aa4.02□□□□□ -1.77
SF3A1-201ENST00000215793 KRTAP19-7Q3SYF9 63 aa4.01□□□□□ -1.77
SF3A1-201ENST00000215793 KRTAP9-2Q9BYQ4 174 aa4.01□□□□□ -1.77
SF3A1-201ENST00000215793 UBR4Q5T4S7 5183 aa4□□□□□ -1.77
SF3A1-201ENST00000215793 TNXBP22105 4242 aa3.99□□□□□ -1.77
SF3A1-201ENST00000215793 MT1AP04731 61 aa3.98□□□□□ -1.77
SF3A1-201ENST00000215793 RNF213Q63HN8 5207 aa3.97□□□□□ -1.77
SF3A1-201ENST00000215793 LCE1BQ5T7P3 118 aa3.97□□□□□ -1.77
SF3A1-201ENST00000215793 LCE1DQ5T752 114 aa3.96□□□□□ -1.78
SF3A1-201ENST00000215793 LCE2AQ5TA79 106 aaPredicted RBP3.95□□□□□ -1.78
SF3A1-201ENST00000215793 FSIP2Q5CZC0 6907 aa3.93□□□□□ -1.78
SF3A1-201ENST00000215793 FAT4Q6V0I7 4981 aa3.91□□□□□ -1.78
SF3A1-201ENST00000215793 OBSCNQ5VST9 7968 aa3.88□□□□□ -1.79
SF3A1-201ENST00000215793 KRTAP2-3P0C7H8 128 aa3.88□□□□□ -1.79
SF3A1-201ENST00000215793 KRTAP2-4Q9BYR9 128 aa3.88□□□□□ -1.79
SF3A1-201ENST00000215793 KRTAP2-1Q9BYU5 128 aa3.88□□□□□ -1.79
SF3A1-201ENST00000215793 MUC2Q02817 5179 aa3.86□□□□□ -1.79
SF3A1-201ENST00000215793 HMCN2Q8NDA2 5059 aa3.84□□□□□ -1.8
SF3A1-201ENST00000215793 LCE1AQ5T7P2 110 aa3.8□□□□□ -1.8
SF3A1-201ENST00000215793 KRTAP4-9Q9BYQ8 210 aa3.78□□□□□ -1.8
SF3A1-201ENST00000215793 KRTAP9-6A0A140TA67 174 aa3.78□□□□□ -1.8
SF3A1-201ENST00000215793 LCE5AQ5TCM9 118 aa3.71□□□□□ -1.82
SF3A1-201ENST00000215793 SYNE2Q8WXH0 6885 aaKnown RBP3.69□□□□□ -1.82
SF3A1-201ENST00000215793 KRTAP20-1Q3LI63 56 aa3.67□□□□□ -1.82
SF3A1-201ENST00000215793 KRTAP6-3Q3LI67 103 aa3.66□□□□□ -1.82
SF3A1-201ENST00000215793 KRTAP6-1Q3LI64 71 aa3.66□□□□□ -1.82
SF3A1-201ENST00000215793 KRTAP9-6A8MVA2 160 aa3.64□□□□□ -1.83
SF3A1-201ENST00000215793 KRTAP6-2Q3LI66 62 aa3.63□□□□□ -1.83
SF3A1-201ENST00000215793 KRTAP9-4Q9BYQ2 154 aa3.63□□□□□ -1.83
SF3A1-201ENST00000215793 KRTAP9-7A8MTY7 169 aa3.61□□□□□ -1.83
SF3A1-201ENST00000215793 LCE4AQ5TA78 99 aa3.59□□□□□ -1.83
SF3A1-201ENST00000215793 KRTAP2-2Q9BYT5 123 aa3.49□□□□□ -1.85
SF3A1-201ENST00000215793 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.48□□□□□ -1.85
SF3A1-201ENST00000215793 USH2AO75445 5202 aa3.46□□□□□ -1.86
SF3A1-201ENST00000215793 FCGBPQ9Y6R7 5405 aaPredicted RBP3.45□□□□□ -1.86
SF3A1-201ENST00000215793 DSTQ03001 7570 aaKnown RBP3.42□□□□□ -1.86
SF3A1-201ENST00000215793 LCE1CQ5T751 118 aa3.37□□□□□ -1.87
SF3A1-201ENST00000215793 LCE1EQ5T753 118 aa3.37□□□□□ -1.87
SF3A1-201ENST00000215793 LCE1FQ5T754 118 aa3.37□□□□□ -1.87
SF3A1-201ENST00000215793 MACF1Q9UPN3 7388 aaKnown RBP3.37□□□□□ -1.87
SF3A1-201ENST00000215793 MUC19Q7Z5P9 8384 aa3.21□□□□□ -1.9
SF3A1-201ENST00000215793 KMT2DO14686 5537 aa3.17□□□□□ -1.9
SF3A1-201ENST00000215793 KRTAP9-9Q9BYP9 154 aa3.12□□□□□ -1.91
SF3A1-201ENST00000215793 NEBP20929 6669 aa3.11□□□□□ -1.91
SF3A1-201ENST00000215793 KRTAP5-9P26371 169 aa3.1□□□□□ -1.91
SF3A1-201ENST00000215793 MDN1Q9NU22 5596 aa3.07□□□□□ -1.92
SF3A1-201ENST00000215793 GPR98Q8WXG9 6306 aa3.02□□□□□ -1.93
SF3A1-201ENST00000215793 SSPOA2VEC9 5147 aa3□□□□□ -1.93
SF3A1-201ENST00000215793 KRTAP20-2Q3LI61 65 aa2.98□□□□□ -1.93
SF3A1-201ENST00000215793 KRTAP4-11Q9BYQ6 195 aa2.97□□□□□ -1.93
SF3A1-201ENST00000215793 KRTAP4-6Q9BYQ5 205 aa2.97□□□□□ -1.93
SF3A1-201ENST00000215793 MUC12Q9UKN1 5478 aa2.94□□□□□ -1.94
SF3A1-201ENST00000215793 KRTAP5-4Q6L8H1 288 aa2.74□□□□□ -1.97
SF3A1-201ENST00000215793 KRTAP4-4Q9BYR3 166 aa2.71□□□□□ -1.98
SF3A1-201ENST00000215793 KRTAP5-5Q701N2 237 aaPredicted RBP2.68□□□□□ -1.98
SF3A1-201ENST00000215793 KRTAP4-12Q9BQ66 201 aa2.66□□□□□ -1.98
SF3A1-201ENST00000215793 KRTAP4-2Q9BYR5 136 aa2.66□□□□□ -1.98
SF3A1-201ENST00000215793 MUC5ACP98088 5654 aa2.54□□□□□ -2
SF3A1-201ENST00000215793 HMCN1Q96RW7 5635 aa2.49□□□□□ -2.01
SF3A1-201ENST00000215793 AHNAK2Q8IVF2 5795 aa2.42□□□□□ -2.02
SF3A1-201ENST00000215793 KRTAP5-3Q6L8H2 238 aa2.41□□□□□ -2.02
SF3A1-201ENST00000215793 KRTAP5-10Q6L8G5 202 aa2.2□□□□□ -2.06
SF3A1-201ENST00000215793 KRTAP5-8O75690 187 aa2.18□□□□□ -2.06
SF3A1-201ENST00000215793 KRTAP5-2Q701N4 177 aa2.12□□□□□ -2.07
SF3A1-201ENST00000215793 MUC5BQ9HC84 5762 aaPredicted RBP2.06□□□□□ -2.08
SF3A1-201ENST00000215793 AHNAKQ09666 5890 aaKnown RBP2.02□□□□□ -2.09
SF3A1-201ENST00000215793 PHGR1C9JFL3 82 aa2□□□□□ -2.09
SF3A1-201ENST00000215793 KRTAP5-11Q6L8G4 156 aa1.99□□□□□ -2.09
SF3A1-201ENST00000215793 KRTAP5-1Q6L8H4 278 aa1.92□□□□□ -2.1
SF3A1-201ENST00000215793 KRTAP21-2Q3LI59 83 aa1.84□□□□□ -2.12
SF3A1-201ENST00000215793 KRTAP5-7Q6L8G8 165 aa1.83□□□□□ -2.12
SF3A1-201ENST00000215793 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.73□□□□□ -2.13
SF3A1-201ENST00000215793 KRTAP21-1Q3LI58 79 aa1.71□□□□□ -2.14
SF3A1-201ENST00000215793 MUC16Q8WXI7 14507 aa1.19□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 60.4 ms