RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 Q6ZQT0 140 aa4.94□□□□□ -1.62
HDAC3-215ENST00000519474 A0A1W2PNM2 257 aa4.93□□□□□ -1.62
HDAC3-215ENST00000519474 MT1HP80294 61 aa4.93□□□□□ -1.62
HDAC3-215ENST00000519474 C8orf17Q9NRJ1 99 aa4.93□□□□□ -1.62
HDAC3-215ENST00000519474 Q96NJ1 140 aa4.91□□□□□ -1.62
HDAC3-215ENST00000519474 LUZP6Q538Z0 58 aa4.9□□□□□ -1.63
HDAC3-215ENST00000519474 LCE2DQ5TA82 110 aaPredicted RBP4.9□□□□□ -1.63
HDAC3-215ENST00000519474 ADM2Q7Z4H4 148 aa4.9□□□□□ -1.63
HDAC3-215ENST00000519474 CSAG1Q6PB30 78 aa4.89□□□□□ -1.63
HDAC3-215ENST00000519474 A8MWP4 228 aa4.88□□□□□ -1.63
HDAC3-215ENST00000519474 C20orf166-AS1Q96NR2 134 aa4.87□□□□□ -1.63
HDAC3-215ENST00000519474 A8MUU9 505 aa4.86□□□□□ -1.63
HDAC3-215ENST00000519474 CAMK2N1Q7Z7J9 78 aa4.85□□□□□ -1.63
HDAC3-215ENST00000519474 KRTAP9-6A0A140TA67 174 aa4.84□□□□□ -1.63
HDAC3-215ENST00000519474 H0Y9P7 68 aa4.84□□□□□ -1.63
HDAC3-215ENST00000519474 IGKV4-1P06312 121 aa4.84□□□□□ -1.63
HDAC3-215ENST00000519474 LORP23490 312 aaPredicted RBP4.84□□□□□ -1.63
HDAC3-215ENST00000519474 DSCR10P59022 87 aa4.84□□□□□ -1.63
HDAC3-215ENST00000519474 KRTAP10-6P60371 365 aaPredicted RBP4.84□□□□□ -1.63
HDAC3-215ENST00000519474 LINC00472Q9H8W2 130 aa4.84□□□□□ -1.63
HDAC3-215ENST00000519474 DEFB116Q30KQ4 102 aa4.83□□□□□ -1.64
HDAC3-215ENST00000519474 SPATA8Q6RVD6 105 aa4.83□□□□□ -1.64
HDAC3-215ENST00000519474 COX6B2Q6YFQ2 88 aa4.82□□□□□ -1.64
HDAC3-215ENST00000519474 P0C880 135 aa4.81□□□□□ -1.64
HDAC3-215ENST00000519474 SPINK7P58062 85 aa4.81□□□□□ -1.64
HDAC3-215ENST00000519474 KRTAP25-1Q3LHN0 102 aa4.81□□□□□ -1.64
HDAC3-215ENST00000519474 DMAC1Q96GE9 116 aa4.81□□□□□ -1.64
HDAC3-215ENST00000519474 M0R2T5 61 aa4.8□□□□□ -1.64
HDAC3-215ENST00000519474 UQCR11O14957 56 aa4.77□□□□□ -1.65
HDAC3-215ENST00000519474 COA5Q86WW8 74 aa4.77□□□□□ -1.65
HDAC3-215ENST00000519474 CRCT1Q9UGL9 99 aa4.76□□□□□ -1.65
HDAC3-215ENST00000519474 KRTAP3-3Q9BYR6 98 aa4.75□□□□□ -1.65
HDAC3-215ENST00000519474 KRTAP3-2Q9BYR7 98 aa4.75□□□□□ -1.65
HDAC3-215ENST00000519474 A0A1B0GVX0 72 aa4.73□□□□□ -1.65
HDAC3-215ENST00000519474 FLGP20930 4061 aaPredicted RBP4.71□□□□□ -1.66
HDAC3-215ENST00000519474 KRTAP9-8Q9BYQ0 159 aa4.71□□□□□ -1.66
HDAC3-215ENST00000519474 HRES1P13985 223 aa4.7□□□□□ -1.66
HDAC3-215ENST00000519474 KRTAP23-1A1A580 65 aa4.69□□□□□ -1.66
HDAC3-215ENST00000519474 Q5W150 140 aa4.67□□□□□ -1.66
HDAC3-215ENST00000519474 NDUFAF8A1L188 74 aa4.65□□□□□ -1.67
HDAC3-215ENST00000519474 MT2AP02795 61 aa4.6□□□□□ -1.67
HDAC3-215ENST00000519474 MMP24-AS1A0A0U1RRL7 71 aa4.58□□□□□ -1.68
HDAC3-215ENST00000519474 KRTAP15-1Q3LI76 137 aa4.58□□□□□ -1.68
HDAC3-215ENST00000519474 MRPL34Q9BQ48 92 aaKnown RBP4.57□□□□□ -1.68
HDAC3-215ENST00000519474 MT1FP04733 61 aa4.56□□□□□ -1.68
HDAC3-215ENST00000519474 Q8N9L7 120 aa4.56□□□□□ -1.68
HDAC3-215ENST00000519474 KRTAP9-3Q9BYQ3 159 aa4.56□□□□□ -1.68
HDAC3-215ENST00000519474 FSIP2Q5CZC0 6907 aa4.56□□□□□ -1.68
HDAC3-215ENST00000519474 K7EQZ3 153 aa4.55□□□□□ -1.68
HDAC3-215ENST00000519474 A0A1B0GU69 56 aa4.53□□□□□ -1.68
HDAC3-215ENST00000519474 LCE2BO14633 110 aa4.53□□□□□ -1.68
HDAC3-215ENST00000519474 KRTAP10-10P60014 251 aa4.53□□□□□ -1.68
HDAC3-215ENST00000519474 WFDC13Q8IUB5 93 aa4.53□□□□□ -1.68
HDAC3-215ENST00000519474 A0A1B0GU33 70 aa4.5□□□□□ -1.69
HDAC3-215ENST00000519474 SPINT4Q6UDR6 99 aa4.49□□□□□ -1.69
HDAC3-215ENST00000519474 H1FX-AS1Q4G0G2 97 aa4.47□□□□□ -1.69
HDAC3-215ENST00000519474 TP53AIP1Q9HCN2 124 aa4.47□□□□□ -1.69
HDAC3-215ENST00000519474 IGKV2D-30A0A075B6S6 120 aa4.45□□□□□ -1.7
HDAC3-215ENST00000519474 IGKV2-30P06310 120 aa4.45□□□□□ -1.7
HDAC3-215ENST00000519474 USH2AO75445 5202 aa4.45□□□□□ -1.7
HDAC3-215ENST00000519474 ACYP2P14621 99 aa4.44□□□□□ -1.7
HDAC3-215ENST00000519474 KRTAP19-1Q8IUB9 90 aa4.44□□□□□ -1.7
HDAC3-215ENST00000519474 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.41□□□□□ -1.7
HDAC3-215ENST00000519474 SSPOA2VEC9 5147 aa4.41□□□□□ -1.7
HDAC3-215ENST00000519474 KRTAP3-1Q9BYR8 98 aa4.39□□□□□ -1.71
HDAC3-215ENST00000519474 KRTAP9-7A8MTY7 169 aa4.36□□□□□ -1.71
HDAC3-215ENST00000519474 KRTAP19-6Q3LI70 58 aa4.35□□□□□ -1.71
HDAC3-215ENST00000519474 FCGBPQ9Y6R7 5405 aaPredicted RBP4.33□□□□□ -1.72
HDAC3-215ENST00000519474 PRO2289Q9P1D8 64 aa4.33□□□□□ -1.72
HDAC3-215ENST00000519474 S4R3F8 94 aa4.27□□□□□ -1.73
HDAC3-215ENST00000519474 MT1BP07438 61 aa4.21□□□□□ -1.74
HDAC3-215ENST00000519474 SPRR2GQ9BYE4 73 aa4.2□□□□□ -1.74
HDAC3-215ENST00000519474 KRTAP19-8Q3LI54 63 aa4.19□□□□□ -1.74
HDAC3-215ENST00000519474 R4GN34 69 aa4.15□□□□□ -1.75
HDAC3-215ENST00000519474 KRTAP6-3Q3LI67 103 aa4.14□□□□□ -1.75
HDAC3-215ENST00000519474 PLAC4Q8WY50 150 aa4.11□□□□□ -1.75
HDAC3-215ENST00000519474 CRIPTQ9P021 101 aa4.11□□□□□ -1.75
HDAC3-215ENST00000519474 H0YAA0 97 aa4.1□□□□□ -1.75
HDAC3-215ENST00000519474 INE1O15225 51 aa4.1□□□□□ -1.75
HDAC3-215ENST00000519474 KRTAP10-5P60370 271 aa4.1□□□□□ -1.75
HDAC3-215ENST00000519474 MACF1Q9UPN3 7388 aaKnown RBP4.06□□□□□ -1.76
HDAC3-215ENST00000519474 SYNE2Q8WXH0 6885 aaKnown RBP3.98□□□□□ -1.77
HDAC3-215ENST00000519474 KRTAP5-9P26371 169 aa3.94□□□□□ -1.78
HDAC3-215ENST00000519474 MT1XP80297 61 aa3.93□□□□□ -1.78
HDAC3-215ENST00000519474 M0QZ58 72 aa3.88□□□□□ -1.79
HDAC3-215ENST00000519474 KRTAP12-2P59991 146 aa3.87□□□□□ -1.79
HDAC3-215ENST00000519474 MUC12Q9UKN1 5478 aa3.85□□□□□ -1.79
HDAC3-215ENST00000519474 C10orf95Q9H7T3 257 aa3.82□□□□□ -1.8
HDAC3-215ENST00000519474 KRTAP20-1Q3LI63 56 aa3.81□□□□□ -1.8
HDAC3-215ENST00000519474 KRTAP4-8A0A0G2JLE6 195 aa3.8□□□□□ -1.8
HDAC3-215ENST00000519474 SPRR2FQ96RM1 72 aa3.8□□□□□ -1.8
HDAC3-215ENST00000519474 KRTAP4-8Q9BYQ9 185 aa3.8□□□□□ -1.8
HDAC3-215ENST00000519474 KMT2DO14686 5537 aa3.79□□□□□ -1.8
HDAC3-215ENST00000519474 KRTAP8-1Q8IUC2 63 aa3.78□□□□□ -1.8
HDAC3-215ENST00000519474 PP632Q6XCG6 107 aa3.77□□□□□ -1.81
HDAC3-215ENST00000519474 KRTAP10-7P60409 375 aaPredicted RBP3.76□□□□□ -1.81
HDAC3-215ENST00000519474 KRTAP2-3P0C7H8 128 aa3.75□□□□□ -1.81
HDAC3-215ENST00000519474 SPRR2EP22531 72 aa3.75□□□□□ -1.81
HDAC3-215ENST00000519474 SPRR2BP35325 72 aa3.75□□□□□ -1.81
HDAC3-215ENST00000519474 SPRR2AP35326 72 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms