RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 PRO0461Q9UI25 63 aa3.4□□□□□ -1.87
VPS41-208ENST00000448833 MMP24-AS1A0A0U1RRL7 71 aa3.38□□□□□ -1.87
VPS41-208ENST00000448833 BPY2O14599 106 aa3.38□□□□□ -1.87
VPS41-208ENST00000448833 MACF1Q9UPN3 7388 aaKnown RBP3.37□□□□□ -1.87
VPS41-208ENST00000448833 KRTAP19-6Q3LI70 58 aa3.37□□□□□ -1.87
VPS41-208ENST00000448833 C7orf65Q6ZTY9 151 aa3.37□□□□□ -1.87
VPS41-208ENST00000448833 K7EQZ3 153 aa3.35□□□□□ -1.87
VPS41-208ENST00000448833 ACYP1P07311 99 aa3.35□□□□□ -1.87
VPS41-208ENST00000448833 IMUPQ9GZP8 106 aa3.35□□□□□ -1.87
VPS41-208ENST00000448833 IGKV2D-30A0A075B6S6 120 aa3.34□□□□□ -1.87
VPS41-208ENST00000448833 IGKV2-30P06310 120 aa3.34□□□□□ -1.87
VPS41-208ENST00000448833 CXCL6P80162 114 aa3.34□□□□□ -1.87
VPS41-208ENST00000448833 CASC2Q6XLA1 102 aa3.34□□□□□ -1.87
VPS41-208ENST00000448833 PSPHP1O15172 72 aa3.32□□□□□ -1.88
VPS41-208ENST00000448833 HCG22E2RYF7 251 aa3.31□□□□□ -1.88
VPS41-208ENST00000448833 UBL5Q9BZL1 73 aa3.31□□□□□ -1.88
VPS41-208ENST00000448833 MP68P56378 58 aa3.3□□□□□ -1.88
VPS41-208ENST00000448833 Q5W150 140 aa3.3□□□□□ -1.88
VPS41-208ENST00000448833 SYNE2Q8WXH0 6885 aaKnown RBP3.3□□□□□ -1.88
VPS41-208ENST00000448833 ATP5EP2Q5VTU8 51 aa3.28□□□□□ -1.88
VPS41-208ENST00000448833 CSAG1Q6PB30 78 aa3.28□□□□□ -1.88
VPS41-208ENST00000448833 TP53AIP1Q9HCN2 124 aa3.28□□□□□ -1.88
VPS41-208ENST00000448833 FAM236AA0A1B0GUQ0 79 aa3.27□□□□□ -1.89
VPS41-208ENST00000448833 FAM236BA0A1B0GV22 79 aa3.27□□□□□ -1.89
VPS41-208ENST00000448833 TMEM258P61165 79 aa3.27□□□□□ -1.89
VPS41-208ENST00000448833 KRTAP6-3Q3LI67 103 aa3.27□□□□□ -1.89
VPS41-208ENST00000448833 LINC00643Q86TS7 51 aa3.27□□□□□ -1.89
VPS41-208ENST00000448833 CCDC179H3BU77 68 aa3.26□□□□□ -1.89
VPS41-208ENST00000448833 KTN1-AS1Q86SY8 53 aa3.26□□□□□ -1.89
VPS41-208ENST00000448833 Q8N9L7 120 aa3.26□□□□□ -1.89
VPS41-208ENST00000448833 S4R3F8 94 aa3.26□□□□□ -1.89
VPS41-208ENST00000448833 C1orf64Q8NEQ6 169 aa3.25□□□□□ -1.89
VPS41-208ENST00000448833 UQCRQO14949 82 aa3.24□□□□□ -1.89
VPS41-208ENST00000448833 SMIM26A0A096LP01 95 aa3.23□□□□□ -1.89
VPS41-208ENST00000448833 Q5VV11 94 aa3.23□□□□□ -1.89
VPS41-208ENST00000448833 A6NN06 94 aa3.22□□□□□ -1.89
VPS41-208ENST00000448833 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.22□□□□□ -1.89
VPS41-208ENST00000448833 LCA10Q71F78 164 aa3.22□□□□□ -1.89
VPS41-208ENST00000448833 BRK1Q8WUW1 75 aa3.22□□□□□ -1.89
VPS41-208ENST00000448833 A8MUN3 132 aa3.21□□□□□ -1.9
VPS41-208ENST00000448833 MT-ATP8P03928 68 aa3.21□□□□□ -1.9
VPS41-208ENST00000448833 HIST1H4AP62805 103 aaKnown RBP3.21□□□□□ -1.9
VPS41-208ENST00000448833 SPRR2GQ9BYE4 73 aa3.21□□□□□ -1.9
VPS41-208ENST00000448833 CRIPTQ9P021 101 aa3.2□□□□□ -1.9
VPS41-208ENST00000448833 KLKP1Q107X0 134 aa3.19□□□□□ -1.9
VPS41-208ENST00000448833 KRTAP19-8Q3LI54 63 aa3.18□□□□□ -1.9
VPS41-208ENST00000448833 CYP4F30PQ9H0H9 118 aa3.17□□□□□ -1.9
VPS41-208ENST00000448833 SERP1Q9Y6X1 66 aa3.17□□□□□ -1.9
VPS41-208ENST00000448833 LOC101927531A0A1B0GV80 90 aa3.16□□□□□ -1.9
VPS41-208ENST00000448833 ATOX1O00244 68 aa3.16□□□□□ -1.9
VPS41-208ENST00000448833 TRAV22A0A0B4J277 110 aa3.15□□□□□ -1.91
VPS41-208ENST00000448833 MT1BP07438 61 aa3.15□□□□□ -1.91
VPS41-208ENST00000448833 OCR1Q9BZK8 76 aa3.15□□□□□ -1.91
VPS41-208ENST00000448833 NDUFC1O43677 76 aa3.14□□□□□ -1.91
VPS41-208ENST00000448833 KRTAP10-5P60370 271 aa3.14□□□□□ -1.91
VPS41-208ENST00000448833 A0A087WVE0 104 aa3.13□□□□□ -1.91
VPS41-208ENST00000448833 COX7CP15954 63 aa3.12□□□□□ -1.91
VPS41-208ENST00000448833 H0YAA0 97 aa3.11□□□□□ -1.91
VPS41-208ENST00000448833 LINC01554Q52M75 96 aa3.11□□□□□ -1.91
VPS41-208ENST00000448833 MUC12Q9UKN1 5478 aa3.1□□□□□ -1.91
VPS41-208ENST00000448833 ATP5EP56381 51 aaPredicted RBP3.09□□□□□ -1.91
VPS41-208ENST00000448833 SERP2Q8N6R1 65 aa3.09□□□□□ -1.91
VPS41-208ENST00000448833 NEBP20929 6669 aa3.08□□□□□ -1.92
VPS41-208ENST00000448833 TRAV7A0A075B6U4 112 aa3.08□□□□□ -1.92
VPS41-208ENST00000448833 KRTAP5-9P26371 169 aa3.08□□□□□ -1.92
VPS41-208ENST00000448833 PRAC1Q96KF2 57 aa3.08□□□□□ -1.92
VPS41-208ENST00000448833 PRO2289Q9P1D8 64 aa3.08□□□□□ -1.92
VPS41-208ENST00000448833 H0Y9P7 68 aa3.07□□□□□ -1.92
VPS41-208ENST00000448833 KRTAP20-1Q3LI63 56 aa3.06□□□□□ -1.92
VPS41-208ENST00000448833 CAMK2N1Q7Z7J9 78 aa3.05□□□□□ -1.92
VPS41-208ENST00000448833 C20orf197Q8N268 126 aa3.05□□□□□ -1.92
VPS41-208ENST00000448833 ADM2Q7Z4H4 148 aa3.04□□□□□ -1.92
VPS41-208ENST00000448833 PLAC4Q8WY50 150 aa3.04□□□□□ -1.92
VPS41-208ENST00000448833 H3BPC8 53 aa3.02□□□□□ -1.93
VPS41-208ENST00000448833 K7ERS5 55 aa3.02□□□□□ -1.93
VPS41-208ENST00000448833 LINC00208Q96KT6 92 aa3.02□□□□□ -1.93
VPS41-208ENST00000448833 KMT2DO14686 5537 aa3.01□□□□□ -1.93
VPS41-208ENST00000448833 R4GN34 69 aa3.01□□□□□ -1.93
VPS41-208ENST00000448833 MDN1Q9NU22 5596 aa3.01□□□□□ -1.93
VPS41-208ENST00000448833 KRTAP5-11Q6L8G4 156 aa3□□□□□ -1.93
VPS41-208ENST00000448833 KRTAP2-3P0C7H8 128 aa2.99□□□□□ -1.93
VPS41-208ENST00000448833 KRTAP10-7P60409 375 aaPredicted RBP2.99□□□□□ -1.93
VPS41-208ENST00000448833 LCE1AQ5T7P2 110 aa2.99□□□□□ -1.93
VPS41-208ENST00000448833 KRTAP2-4Q9BYR9 128 aa2.99□□□□□ -1.93
VPS41-208ENST00000448833 SNURFQ9Y675 71 aa2.98□□□□□ -1.93
VPS41-208ENST00000448833 SPRR2FQ96RM1 72 aa2.97□□□□□ -1.93
VPS41-208ENST00000448833 Q1T7F1 81 aa2.96□□□□□ -1.94
VPS41-208ENST00000448833 LUZP6Q538Z0 58 aa2.96□□□□□ -1.94
VPS41-208ENST00000448833 M0QZ58 72 aa2.95□□□□□ -1.94
VPS41-208ENST00000448833 KRTAP12-2P59991 146 aa2.95□□□□□ -1.94
VPS41-208ENST00000448833 MT1XP80297 61 aa2.95□□□□□ -1.94
VPS41-208ENST00000448833 KRTAP8-1Q8IUC2 63 aa2.95□□□□□ -1.94
VPS41-208ENST00000448833 SPRR2EP22531 72 aa2.94□□□□□ -1.94
VPS41-208ENST00000448833 SPRR2BP35325 72 aa2.94□□□□□ -1.94
VPS41-208ENST00000448833 SPRR2AP35326 72 aa2.94□□□□□ -1.94
VPS41-208ENST00000448833 H7BZZ5 65 aa2.93□□□□□ -1.94
VPS41-208ENST00000448833 SPTSSBQ8NFR3 76 aa2.93□□□□□ -1.94
VPS41-208ENST00000448833 DMAC1Q96GE9 116 aa2.93□□□□□ -1.94
VPS41-208ENST00000448833 P0C880 135 aa2.92□□□□□ -1.94
VPS41-208ENST00000448833 A6NED7 52 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms