RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 CNBPP62633 177 aaKnown RBP1.16□□□□□ -2.22
HMGB1-201ENST00000326004 COX7B2Q8TF08 81 aa1.16□□□□□ -2.22
HMGB1-201ENST00000326004 PLAC8Q9NZF1 115 aa1.16□□□□□ -2.22
HMGB1-201ENST00000326004 LINC01558Q9Y6Z2 57 aa1.16□□□□□ -2.22
HMGB1-201ENST00000326004 PKD1P98161 4303 aa1.15□□□□□ -2.22
HMGB1-201ENST00000326004 ETDCA0A1B0GVM5 59 aa1.15□□□□□ -2.23
HMGB1-201ENST00000326004 TRBV6-4A0A1B0GX49 114 aa1.15□□□□□ -2.23
HMGB1-201ENST00000326004 KRTAP26-1Q6PEX3 210 aa1.15□□□□□ -2.23
HMGB1-201ENST00000326004 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.15□□□□□ -2.23
HMGB1-201ENST00000326004 TMEM167AQ8TBQ9 72 aa1.15□□□□□ -2.23
HMGB1-201ENST00000326004 CDKN2A-AS1Q9UH64 79 aa1.15□□□□□ -2.23
HMGB1-201ENST00000326004 LRP1BQ9NZR2 4599 aa1.15□□□□□ -2.23
HMGB1-201ENST00000326004 PKHD1L1Q86WI1 4243 aa1.14□□□□□ -2.23
HMGB1-201ENST00000326004 H0Y9P7 68 aa1.14□□□□□ -2.23
HMGB1-201ENST00000326004 I3L2K1 104 aa1.14□□□□□ -2.23
HMGB1-201ENST00000326004 CCL18P55774 89 aa1.14□□□□□ -2.23
HMGB1-201ENST00000326004 LINC00158P58513 81 aa1.14□□□□□ -2.23
HMGB1-201ENST00000326004 COX6A2Q02221 97 aa1.14□□□□□ -2.23
HMGB1-201ENST00000326004 C4orf3Q8WVX3 66 aa1.14□□□□□ -2.23
HMGB1-201ENST00000326004 MACF1Q9UPN3 7388 aaKnown RBP1.14□□□□□ -2.23
HMGB1-201ENST00000326004 DNAH5Q8TE73 4624 aa1.14□□□□□ -2.23
HMGB1-201ENST00000326004 DNAH17Q9UFH2 4485 aa1.13□□□□□ -2.23
HMGB1-201ENST00000326004 SSPOA2VEC9 5147 aa1.13□□□□□ -2.23
HMGB1-201ENST00000326004 M0QY20 66 aa1.13□□□□□ -2.23
HMGB1-201ENST00000326004 LINC00575Q6W349 94 aa1.13□□□□□ -2.23
HMGB1-201ENST00000326004 LENEPQ9Y5L5 61 aa1.13□□□□□ -2.23
HMGB1-201ENST00000326004 DNAH6Q9C0G6 4158 aa1.12□□□□□ -2.23
HMGB1-201ENST00000326004 VPS13BQ7Z7G8 4022 aa1.12□□□□□ -2.23
HMGB1-201ENST00000326004 K7EIM0 57 aa1.12□□□□□ -2.23
HMGB1-201ENST00000326004 SPATA8Q6RVD6 105 aa1.12□□□□□ -2.23
HMGB1-201ENST00000326004 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.12□□□□□ -2.23
HMGB1-201ENST00000326004 KCNQ1DNQ9H478 68 aa1.12□□□□□ -2.23
HMGB1-201ENST00000326004 A8MTW9 85 aa1.11□□□□□ -2.23
HMGB1-201ENST00000326004 H3BUX3 64 aa1.11□□□□□ -2.23
HMGB1-201ENST00000326004 COX7BP24311 80 aa1.11□□□□□ -2.23
HMGB1-201ENST00000326004 DEFB114Q30KQ6 69 aa1.11□□□□□ -2.23
HMGB1-201ENST00000326004 Q6ZQY7 126 aa1.11□□□□□ -2.23
HMGB1-201ENST00000326004 UBE2DNLQ8IWF7 75 aa1.11□□□□□ -2.23
HMGB1-201ENST00000326004 TOMM7Q9P0U1 55 aa1.11□□□□□ -2.23
HMGB1-201ENST00000326004 FAT3Q8TDW7 4589 aa1.11□□□□□ -2.23
HMGB1-201ENST00000326004 IGKV3-7A0A075B6H7 116 aa1.1□□□□□ -2.23
HMGB1-201ENST00000326004 IGKV3OR2-268A0A0C4DH90 116 aa1.1□□□□□ -2.23
HMGB1-201ENST00000326004 UQCR11O14957 56 aa1.1□□□□□ -2.23
HMGB1-201ENST00000326004 MRPL33O75394 65 aaKnown RBP1.1□□□□□ -2.23
HMGB1-201ENST00000326004 DEFB1P60022 68 aa1.1□□□□□ -2.23
HMGB1-201ENST00000326004 SPRR4Q96PI1 79 aa1.1□□□□□ -2.23
HMGB1-201ENST00000326004 A0A1B0GU69 56 aa1.09□□□□□ -2.23
HMGB1-201ENST00000326004 K7EQZ3 153 aa1.09□□□□□ -2.23
HMGB1-201ENST00000326004 CCL3L1P16619 93 aa1.09□□□□□ -2.23
HMGB1-201ENST00000326004 UNQ6190/PRO20217Q6UXQ8 127 aa1.09□□□□□ -2.23
HMGB1-201ENST00000326004 WFDC10BQ8IUB3 73 aa1.09□□□□□ -2.23
HMGB1-201ENST00000326004 WFDC13Q8IUB5 93 aa1.09□□□□□ -2.23
HMGB1-201ENST00000326004 Q8IZM0 81 aa1.09□□□□□ -2.23
HMGB1-201ENST00000326004 APLNQ9ULZ1 77 aa1.09□□□□□ -2.23
HMGB1-201ENST00000326004 A0A087WTM6 91 aa1.08□□□□□ -2.24
HMGB1-201ENST00000326004 INE1O15225 51 aa1.08□□□□□ -2.24
HMGB1-201ENST00000326004 DEFB136Q30KP8 78 aa1.08□□□□□ -2.24
HMGB1-201ENST00000326004 DMAC1Q96GE9 116 aa1.08□□□□□ -2.24
HMGB1-201ENST00000326004 LINC00472Q9H8W2 130 aa1.08□□□□□ -2.24
HMGB1-201ENST00000326004 CRIPTQ9P021 101 aa1.08□□□□□ -2.24
HMGB1-201ENST00000326004 LRP1Q07954 4544 aaKnown RBP1.08□□□□□ -2.24
HMGB1-201ENST00000326004 TRGV1A0A0A0MS02 117 aa1.07□□□□□ -2.24
HMGB1-201ENST00000326004 SSBP3-AS1Q7Z2R9 100 aa1.07□□□□□ -2.24
HMGB1-201ENST00000326004 DEFB105AQ8NG35 78 aa1.07□□□□□ -2.24
HMGB1-201ENST00000326004 DEFB131BA0A096LNP1 70 aa1.06□□□□□ -2.24
HMGB1-201ENST00000326004 KRTAP2-3P0C7H8 128 aa1.06□□□□□ -2.24
HMGB1-201ENST00000326004 HTN1P15515 57 aa1.06□□□□□ -2.24
HMGB1-201ENST00000326004 C10orf99Q6UWK7 81 aa1.06□□□□□ -2.24
HMGB1-201ENST00000326004 Q6ZSA8 131 aa1.06□□□□□ -2.24
HMGB1-201ENST00000326004 Q96NJ1 140 aa1.06□□□□□ -2.24
HMGB1-201ENST00000326004 KRTAP2-4Q9BYR9 128 aa1.06□□□□□ -2.24
HMGB1-201ENST00000326004 KAAG1Q9UBP8 84 aa1.06□□□□□ -2.24
HMGB1-201ENST00000326004 LPAP08519 4548 aa1.05□□□□□ -2.24
HMGB1-201ENST00000326004 MT1HL1P0DM35 61 aa1.05□□□□□ -2.24
HMGB1-201ENST00000326004 RPL37AP61513 92 aaKnown RBP1.05□□□□□ -2.24
HMGB1-201ENST00000326004 SPINK13Q1W4C9 94 aa1.05□□□□□ -2.24
HMGB1-201ENST00000326004 TNXBP22105 4242 aa1.04□□□□□ -2.24
HMGB1-201ENST00000326004 IGLV5-48A0A075B6I7 105 aa1.04□□□□□ -2.24
HMGB1-201ENST00000326004 NBDYA0A0U1RRE5 68 aa1.04□□□□□ -2.24
HMGB1-201ENST00000326004 ANGP03950 147 aaKnown RBP1.04□□□□□ -2.24
HMGB1-201ENST00000326004 COX17Q14061 63 aa1.04□□□□□ -2.24
HMGB1-201ENST00000326004 MINOS1Q5TGZ0 78 aa1.04□□□□□ -2.24
HMGB1-201ENST00000326004 ACYP2P14621 99 aa1.03□□□□□ -2.24
HMGB1-201ENST00000326004 DEFB135Q30KP9 77 aa1.03□□□□□ -2.24
HMGB1-201ENST00000326004 Q6ZRX8 168 aa1.03□□□□□ -2.24
HMGB1-201ENST00000326004 RHPN1-AS1Q9BWJ2 59 aa1.03□□□□□ -2.24
HMGB1-201ENST00000326004 C6orf48Q9UBA6 75 aa1.03□□□□□ -2.24
HMGB1-201ENST00000326004 USH2AO75445 5202 aa1.02□□□□□ -2.25
HMGB1-201ENST00000326004 MMP24-AS1A0A0U1RRL7 71 aa1.02□□□□□ -2.25
HMGB1-201ENST00000326004 G3V318 75 aa1.02□□□□□ -2.25
HMGB1-201ENST00000326004 CLPSL2Q6UWE3 100 aa1.02□□□□□ -2.25
HMGB1-201ENST00000326004 C5orf56Q8N8D9 126 aa1.02□□□□□ -2.25
HMGB1-201ENST00000326004 TP53AIP1Q9HCN2 124 aa1.02□□□□□ -2.25
HMGB1-201ENST00000326004 DEFB4AO15263 64 aa1.01□□□□□ -2.25
HMGB1-201ENST00000326004 KLK9Q2XQG4 91 aa1.01□□□□□ -2.25
HMGB1-201ENST00000326004 TNCP24821 2201 aa1.01□□□□□ -2.25
HMGB1-201ENST00000326004 FCGBPQ9Y6R7 5405 aaPredicted RBP1□□□□□ -2.25
HMGB1-201ENST00000326004 H0YAA0 97 aa1□□□□□ -2.25
HMGB1-201ENST00000326004 KRTAP2-1Q9BYU5 128 aa1□□□□□ -2.25
HMGB1-201ENST00000326004 M0R2T5 61 aa0.99□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms