RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, human

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-231	ENST00000640499	LCE2C	Q5TA81	110 aa		14.06	□□□□□ -0.16
VEGFA-231	ENST00000640499	SMCP	P49901	116 aa	Predicted RBP	14.05	□□□□□ -0.16
VEGFA-231	ENST00000640499	LINC00313	P59037	77 aa		14.05	□□□□□ -0.16
VEGFA-231	ENST00000640499	C21orf62-AS1	Q17RA5	79 aa		14.05	□□□□□ -0.16
VEGFA-231	ENST00000640499		A0A1B0GW54	56 aa		14.04	□□□□□ -0.16
VEGFA-231	ENST00000640499	IGHV6-1	A0A0B4J1U7	121 aa		14	□□□□□ -0.17
VEGFA-231	ENST00000640499	ATP11AUN	Q6ZP68	121 aa		14	□□□□□ -0.17
VEGFA-231	ENST00000640499	PRO0461	Q9UI25	63 aa		13.99	□□□□□ -0.17
VEGFA-231	ENST00000640499		A0A1B0GVX0	72 aa		13.98	□□□□□ -0.17
VEGFA-231	ENST00000640499		J3KT08	172 aa		13.96	□□□□□ -0.17
VEGFA-231	ENST00000640499		K7EP34	96 aa		13.96	□□□□□ -0.17
VEGFA-231	ENST00000640499	C8orf87	E5RJ46	101 aa		13.89	□□□□□ -0.19
VEGFA-231	ENST00000640499	IGKV3D-7	A0A0C4DH55	119 aa		13.86	□□□□□ -0.19
VEGFA-231	ENST00000640499		A8MWP4	228 aa		13.86	□□□□□ -0.19
VEGFA-231	ENST00000640499	NREP	Q16612	68 aa		13.86	□□□□□ -0.19
VEGFA-231	ENST00000640499	NDUFB1	O75438	58 aa		13.8	□□□□□ -0.2
VEGFA-231	ENST00000640499	MT1H	P80294	61 aa		13.79	□□□□□ -0.2
VEGFA-231	ENST00000640499	C8orf17	Q9NRJ1	99 aa		13.78	□□□□□ -0.2
VEGFA-231	ENST00000640499	GTF2H5	Q6ZYL4	71 aa		13.76	□□□□□ -0.21
VEGFA-231	ENST00000640499	PRR15	Q8IV56	129 aa		13.76	□□□□□ -0.21
VEGFA-231	ENST00000640499		Q8N9P0	234 aa	Predicted RBP	13.72	□□□□□ -0.21
VEGFA-231	ENST00000640499	FLG	P20930	4061 aa	Predicted RBP	13.72	□□□□□ -0.21
VEGFA-231	ENST00000640499		Q6ZVQ6	151 aa		13.71	□□□□□ -0.21
VEGFA-231	ENST00000640499		F8W1H4	67 aa		13.68	□□□□□ -0.22
VEGFA-231	ENST00000640499		K7EQZ3	153 aa		13.68	□□□□□ -0.22
VEGFA-231	ENST00000640499	KRTAP9-2	Q9BYQ4	174 aa		13.68	□□□□□ -0.22
VEGFA-231	ENST00000640499	MMP24-AS1	A0A0U1RRL7	71 aa		13.66	□□□□□ -0.22
VEGFA-231	ENST00000640499	BPY2	O14599	106 aa		13.65	□□□□□ -0.22
VEGFA-231	ENST00000640499	LINC00846	Q9NV44	126 aa		13.65	□□□□□ -0.22
VEGFA-231	ENST00000640499	COX6B2	Q6YFQ2	88 aa		13.64	□□□□□ -0.23
VEGFA-231	ENST00000640499	ZCCHC13	Q8WW36	166 aa	Known RBP	13.63	□□□□□ -0.23
VEGFA-231	ENST00000640499	ETDB	Q3ZM63	59 aa		13.62	□□□□□ -0.23
VEGFA-231	ENST00000640499		Q8N9L7	120 aa		13.57	□□□□□ -0.24
VEGFA-231	ENST00000640499	HRES1	P13985	223 aa		13.56	□□□□□ -0.24
VEGFA-231	ENST00000640499	TMEM254	Q8TBM7	123 aa		13.56	□□□□□ -0.24
VEGFA-231	ENST00000640499	MRPL34	Q9BQ48	92 aa	Known RBP	13.55	□□□□□ -0.24
VEGFA-231	ENST00000640499	MPLKIP	Q8TAP9	179 aa		13.54	□□□□□ -0.24
VEGFA-231	ENST00000640499	hDV103S1	A0JD37	113 aa		13.52	□□□□□ -0.25
VEGFA-231	ENST00000640499	UBL5	Q9BZL1	73 aa		13.5	□□□□□ -0.25
VEGFA-231	ENST00000640499	LOR	P23490	312 aa	Predicted RBP	13.46	□□□□□ -0.25
VEGFA-231	ENST00000640499	SPINK7	P58062	85 aa		13.46	□□□□□ -0.25
VEGFA-231	ENST00000640499	KRTAP10-6	P60371	365 aa	Predicted RBP	13.46	□□□□□ -0.25
VEGFA-231	ENST00000640499		M0R2T5	61 aa		13.42	□□□□□ -0.26
VEGFA-231	ENST00000640499	WFDC13	Q8IUB5	93 aa		13.42	□□□□□ -0.26
VEGFA-231	ENST00000640499	CASC2	Q6XLA1	102 aa		13.38	□□□□□ -0.27
VEGFA-231	ENST00000640499		A0A1B0GV90	55 aa		13.36	□□□□□ -0.27
VEGFA-231	ENST00000640499	NDUFS5	O43920	106 aa		13.36	□□□□□ -0.27
VEGFA-231	ENST00000640499		Q5W150	140 aa		13.35	□□□□□ -0.27
VEGFA-231	ENST00000640499	RBM12B-AS1	Q9P1G2	102 aa		13.34	□□□□□ -0.27
VEGFA-231	ENST00000640499	FAM236D	A0A1B0GTK5	79 aa		13.29	□□□□□ -0.28
VEGFA-231	ENST00000640499	HCG22	E2RYF7	251 aa		13.29	□□□□□ -0.28
VEGFA-231	ENST00000640499	FAM236C	P0DP71	79 aa		13.29	□□□□□ -0.28
VEGFA-231	ENST00000640499	CXCL6	P80162	114 aa		13.29	□□□□□ -0.28
VEGFA-231	ENST00000640499	LCE2D	Q5TA82	110 aa	Predicted RBP	13.28	□□□□□ -0.28
VEGFA-231	ENST00000640499	KRTAP9-6	A0A140TA67	174 aa		13.24	□□□□□ -0.29
VEGFA-231	ENST00000640499	ACYP1	P07311	99 aa		13.22	□□□□□ -0.29
VEGFA-231	ENST00000640499	FAM240A	A0A1B0GVK7	77 aa		13.2	□□□□□ -0.3
VEGFA-231	ENST00000640499	KRTAP9-8	Q9BYQ0	159 aa		13.15	□□□□□ -0.3
VEGFA-231	ENST00000640499	IGKV2D-30	A0A075B6S6	120 aa		13.12	□□□□□ -0.31
VEGFA-231	ENST00000640499	IGKV2-30	P06310	120 aa		13.12	□□□□□ -0.31
VEGFA-231	ENST00000640499	C7orf65	Q6ZTY9	151 aa		13.08	□□□□□ -0.32
VEGFA-231	ENST00000640499	FSIP2	Q5CZC0	6907 aa		13.07	□□□□□ -0.32
VEGFA-231	ENST00000640499	ATP5EP2	Q5VTU8	51 aa		13.01	□□□□□ -0.33
VEGFA-231	ENST00000640499	TP53AIP1	Q9HCN2	124 aa		12.99	□□□□□ -0.33
VEGFA-231	ENST00000640499	MT2A	P02795	61 aa		12.96	□□□□□ -0.33
VEGFA-231	ENST00000640499	LINC00643	Q86TS7	51 aa		12.95	□□□□□ -0.34
VEGFA-231	ENST00000640499	CRCT1	Q9UGL9	99 aa		12.93	□□□□□ -0.34
VEGFA-231	ENST00000640499	HIST1H4A	P62805	103 aa	Known RBP	12.92	□□□□□ -0.34
VEGFA-231	ENST00000640499	H1FX-AS1	Q4G0G2	97 aa		12.92	□□□□□ -0.34
VEGFA-231	ENST00000640499	C4orf26	Q17RF5	130 aa		12.91	□□□□□ -0.34
VEGFA-231	ENST00000640499	MT1F	P04733	61 aa		12.88	□□□□□ -0.35
VEGFA-231	ENST00000640499		A0A087WVE0	104 aa		12.87	□□□□□ -0.35
VEGFA-231	ENST00000640499	KRTAP3-1	Q9BYR8	98 aa		12.84	□□□□□ -0.35
VEGFA-231	ENST00000640499	TRAV22	A0A0B4J277	110 aa		12.75	□□□□□ -0.37
VEGFA-231	ENST00000640499		J3QR89	54 aa		12.75	□□□□□ -0.37
VEGFA-231	ENST00000640499	CYP4F30P	Q9H0H9	118 aa		12.75	□□□□□ -0.37
VEGFA-231	ENST00000640499	KRTAP10-10	P60014	251 aa		12.73	□□□□□ -0.37
VEGFA-231	ENST00000640499	USH2A	O75445	5202 aa		12.73	□□□□□ -0.37
VEGFA-231	ENST00000640499	UQCRQ	O14949	82 aa		12.71	□□□□□ -0.37
VEGFA-231	ENST00000640499	KRTAP9-3	Q9BYQ3	159 aa		12.71	□□□□□ -0.37
VEGFA-231	ENST00000640499	C1orf64	Q8NEQ6	169 aa		12.69	□□□□□ -0.38
VEGFA-231	ENST00000640499	LOC101927531	A0A1B0GV80	90 aa		12.65	□□□□□ -0.38
VEGFA-231	ENST00000640499		H0Y9P7	68 aa		12.62	□□□□□ -0.39
VEGFA-231	ENST00000640499	LCE2B	O14633	110 aa		12.6	□□□□□ -0.39
VEGFA-231	ENST00000640499	OCR1	Q9BZK8	76 aa		12.6	□□□□□ -0.39
VEGFA-231	ENST00000640499	SSPO	A2VEC9	5147 aa		12.56	□□□□□ -0.4
VEGFA-231	ENST00000640499	ATOX1	O00244	68 aa		12.55	□□□□□ -0.4
VEGFA-231	ENST00000640499		S4R3F8	94 aa		12.52	□□□□□ -0.41
VEGFA-231	ENST00000640499	C5orf47	Q569G3	176 aa		12.51	□□□□□ -0.41
VEGFA-231	ENST00000640499	LCA10	Q71F78	164 aa		12.51	□□□□□ -0.41
VEGFA-231	ENST00000640499	LINC00208	Q96KT6	92 aa		12.46	□□□□□ -0.41
VEGFA-231	ENST00000640499		K7ERU9	68 aa		12.45	□□□□□ -0.42
VEGFA-231	ENST00000640499	KRTAP3-3	Q9BYR6	98 aa		12.45	□□□□□ -0.42
VEGFA-231	ENST00000640499	MT-ATP8	P03928	68 aa		12.44	□□□□□ -0.42
VEGFA-231	ENST00000640499	KLKP1	Q107X0	134 aa		12.44	□□□□□ -0.42
VEGFA-231	ENST00000640499	MP68	P56378	58 aa		12.38	□□□□□ -0.43
VEGFA-231	ENST00000640499	CSAG1	Q6PB30	78 aa		12.38	□□□□□ -0.43
VEGFA-231	ENST00000640499	IMUP	Q9GZP8	106 aa		12.38	□□□□□ -0.43
VEGFA-231	ENST00000640499	SCGB1A1	P11684	91 aa		12.33	□□□□□ -0.44
VEGFA-231	ENST00000640499		H3BPC8	53 aa		12.26	□□□□□ -0.45

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